!!NA_SEQUENCE 1.0
ID AF113832 standard; circular DNA; VRL; 8005 BP.
XX
AC AF113832;
XX
SV AF113832.1
XX
DT 14-MAY-1999 (Rel. 59, Created)
DT 03-MAR-2000 (Rel. 62, Last updated, Version 4)
XX
DE Rice tungro bacilliform virus strain RTBV-Ic, complete genome.
XX
KW .
XX
OS Rice tungro bacilliform virus
OC Viruses; Retroid viruses.
XX
RN [1]
RP 1-8005
RX MEDLINE; 99394699.
RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H.,
RA Koganezawa H., Azzam O.;
RT "Sequence changes in six variants of rice tungro bacilliform virus and
RT their phylogenetic relationships";
RL J. Gen. Virol. 80(Pt 8):2229-2237(1999).
XX
RN [2]
RP 1-8005
RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H.,
RA Koganezawa H., Azzam O.;
RT ;
RL Submitted (16-DEC-1998) to the EMBL/GenBank/DDBJ databases.
RL Entomology and Plant Pathology, International Rice Research Institute,
RL P.O.Box 933, Manila, Luzon 1099, Philippines
XX
DR SPTREMBL; Q9WQX5; Q9WQX5.
DR SPTREMBL; Q9WQX6; Q9WQX6.
DR SPTREMBL; Q9WQX7; Q9WQX7.
DR SPTREMBL; Q9WQX8; Q9WQX8.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8005
FT /db_xref="taxon:10654"
FT /organism="Rice tungro bacilliform virus"
FT /strain="RTBV-Ic"
FT CDS join(<67. .89,93. .666)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9WQX8"
FT /evidence=NOT_EXPERIMENTAL
FT /note="ORF1; translation start site unknown"
FT /product="P24"
FT /protein_id="AAD30196.1"
FT /translation="VPKRNLISNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYCY
FT FDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKPT
FT KKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVEL
FT RTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST"
FT CDS 663. .995
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9WQX7"
FT /note="ORF2"
FT /product="P12"
FT /protein_id="AAD30197.1"
FT /translation="MSADYPTFKEALEKFKNLESDTASKDKFNWVFTLENIKTTADVNL
FT ASKGLVQLYALQEIDKKINNLTAQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI
FT KRKYPA"
FT CDS 992. .6025
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9WQX6"
FT /note="ORF3"
FT /product="polyprotein P194"
FT /protein_id="AAD30198.1"
FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE
FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN
FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG
FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD
FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR
FT FSNYKQTRMHDPIENNSDEDENLKILGEQLNIKMARFYTMQTPEEELLEVIQQLEREKQ
FT AMIEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE
FT TEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE
FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPVEASKDRNFERI
FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI
FT TGLVLYLVQDWIAKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR
FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG
FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN
FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS
FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKICET
FT QYCKTCADQLAIDVREIKKPTKEESMIEDLKLNVKNLEFRVTILEHKAEMQNLQDKFET
FT MQIRNKPEITEISEATTSLAMRANESKYIKTSINKTAGCYVETKISFNNENRIITALID
FT SGSTHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIK
FT YKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFAR
FT KHGGRPPLFSNIPETYNKIPHLHSYQPQPILSYKNEIGNQSLITMVKELEALGFIGDDI
FT TKNRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRT
FT AAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKA
FT GFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFTLLYID
FT DILIASNNEKEHIEHLKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPH
FT IVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKED
FT WNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGY
FT ASGNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSK
FT TRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSE
FT SIPLYNDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA"
FT CDS 6046. .7215
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9WQX5"
FT /note="ORF4"
FT /product="P46"
FT /protein_id="AAD30199.1"
FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL
FT FTFSSDNTERVRKLHILADYLYLLESERESYRNEWISLSDQVSLLQKQNSELRARIATN
FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD
FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGKDLLQKGVVIFN
FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE
FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED
FT EGEVVYISKNTKIIKVTREHVWAWPEHDGDTMSCTTSIEDEWIHRMENA"
XX
SQ Sequence 8005 BP; 3270 A; 1241 C; 1444 G; 2050 T; 0 other;
AF113832 Length: 8005 December 21, 2001 14:52 Type: N Check: 4923 ..
1 tggtatcaga gcgatgttcg aactttaagg gaaatagaat acaatctagt
51 caaactaatt acataagttc cgaagaggaa tcttatttct taaaacattg
101 agtcacgata cgaaaaactt gaattcttag acttagcagt ctggggaaaa
151 gagaaaaaac aaaaatattt actatctacc gataatatta gcttttattg
201 ttactttgat actagtaaaa ctagtgaatc agaaagaaag catacctttc
251 attctgataa taagcaactt aatagtattg tagatcttat tattaagcat
301 tctgaaaaaa ccaaaaatat taaggaagaa ttagaaaaat atagtcagtt
351 cctagataag atattagatt taaaacctac taaaaaacaa gtcgaaaaac
401 tattagaaaa tcaaaactta attagcaaga actttgatta tatcaaagaa
451 caaaacactc agctagaaaa atcactaaga aaaacagtta agttagaaga
501 ctccattaat actttattag tagaaataca acaagctaga cctaaggaag
551 tagaattaag gactcttaaa atagcagagc agaactctaa ggcaatagaa
601 aaatttgaac aagaaattaa ggatctaaga gaaatcttag aataccttaa
651 gcaccaatct acatgagcgc tgattatcca actttcaagg aagcccttga
701 aaaatttaaa aacctagaat cagatacagc ttctaaagat aagtttaatt
751 gggtatttac tttagaaaat ataaaaacaa ctgcagacgt aaacctagca
801 tctaaaggat tagtacaact ttacgcccta caagaaattg ataaaaagat
851 aaataatctt acagcccaag taagtaagtt acctacaact agtggaagta
901 gttcagcagg agccatagta cctgcaggaa gtaacactca aggtcaatat
951 aaagcaccac ctaaaaaagg aattaaaaga aaatatccag catgagtctt
1001 agaccattta cgggcacttc tagaactata actcaagatt caacttctga
1051 atctaatata aaaaagggaa aaaattcaac aaaaagagaa ttaatagaag
1101 aagtagatgt taatcaggaa gtagaaaact ttgattggaa aaaattatca
1151 ggtattaaac ctaataaatt atatgagaaa aactggcaag aaaaggttaa
1201 gttaaagcaa caatctatag tttcagcata taaagaggaa gctattagcg
1251 taactcataa tgcatatact actactttat ttccacaaga agtaattaag
1301 aatgttaaaa atcagggaaa actttattat catataggca tgatggccat
1351 aggagttaaa ggacttcata gaagaaaaat aggaactaaa gttatgataa
1401 tgttctatga tgatagtttc ggtaaagcta gagaagctag cataggatca
1451 atagaaatgg atatgaacgc cggttgcgga gtattttact cctgccccga
1501 ctttgcaaaa tacattaaag atttatcaca tcttaagata gggatacaaa
1551 ccctaggata tgaaaactat gaaggaaaaa acctttcagt agcaatcaaa
1601 actataggaa gattaaccac taatatacaa tcaaaatata agataaatgt
1651 gaaagatatt gtggaacaaa tatcatcaca aggaatcatt atggtagcac
1701 ccatggaaat agattcatca cacttagatg gaaatgaatg ggatctaagt
1751 aaattcctaa accatgaaaa cacaagtaga gtcccaacca aagccttaat
1801 atatcagaat ctacaaggag gagaatcctt aagattctca aactataagc
1851 aaactagaat gcatgatcct attgagaata attcagatga ggatgaaaat
1901 ttaaaaatct taggagaaca attaaacatt aaaatggcaa gattttacac
1951 aatgcaaacc ccagaggaag aattactaga agtaattcaa caattagaaa
2001 gagaaaaaca agccatgata gaaaaactag aagccaaaat gaaagaatca
2051 tccaaaatgg cgatagtaga agataatttc aacccaaaca atgaatatct
2101 agaagataca tattccgaat atgaagacct agaatttgaa aaattaggac
2151 taactggatg ggaagactta gaccaggatt ccatagaaac cgaagaaata
2201 accgaatggg aaaatcctaa tcaggtactt catagagaaa ttagagcata
2251 caaatcagtc tctgaacaaa tagaagatat atttggggaa ttactaaaag
2301 aacatggaaa ctatgatatg gcccttaaaa acttagaaga aaaatatgac
2351 ctagacaaaa tagaaaaggc caaatctata gaagaaatag ccaaatcatc
2401 tacatcgtca gaaattaggc caactaaacg acctaaagaa gaacaaacag
2451 cctatgaaga tgatatgaga gatgactgga aaagaaagga gttaacagta
2501 aatcctgtag aagcctcaaa ggatagaaac tttgaaagaa taggatcatc
2551 ctataagaag aacttttacc ctagtcgaag tgaaatatta aacctagata
2601 atgttccccc acaattttat tacgaccaat tagtaacatg ggaaggaata
2651 gttaaaaatg aatgggaagc acgaaagaaa gacggcatgg atatgtggtc
2701 ttggatggat ggaagaataa caggattagt cctatactta gtccaagatt
2751 ggatagctaa aaatcaagcc gcctacaatg atataaaatc tagaggtgat
2801 agacctgaaa acttcgtaaa aatggtaaaa gataggttct taatagaaga
2851 tcctacagat gaaagaagaa ctgcattaca aaggttagca caaagagaat
2901 tagaagcctt aaactgcgaa gatcctacga aaattcaacc atttatggct
2951 gaatatctta agaaagcctc agaagccaaa aaaggattcg atgtagttta
3001 tgtagaaaga ctctttgata gactaccaga agcagtagga aaggtagtaa
3051 aggctgactt tgtcaaagat ggtaattcct atgaagcagg aataggaata
3101 gcagtttcat acatatctac atggatgaga gcaaaatgca ttaaggaaac
3151 agaagctaaa acccaaaaga aagcatcttt agcattctgc agatccatat
3201 atactatagg agactataag aaacgaaaaa tcctaaaaag agttacaaat
3251 tataataaaa ataggagaaa gaactacgtc agaagaccta gtattaagaa
3301 aaaatgtaga tgttatatct gtcaagatga gaatcaccta gccaatagat
3351 gtcctagaag atataccaat caggctagag caagtctaat agatggatta
3401 gatgaagata tagtatcaat agcatcagac gatgaagata tcgaaaattt
3451 ccttgaaata atagaacttg atgagtttat agcacattct agtcaggaac
3501 acgaacatac atgggaaatt ggaggaaaga aagataaggt atgtgaaata
3551 tgcagttatt ttacagacta taataaaact gttagttgta aaatttgtga
3601 aacccaatac tgcaaaacat gtgctgatca actcgcaata gacgtaagag
3651 aaattaaaaa acctaccaaa gaagaatcaa tgatagaaga tttaaaatta
3701 aatgtcaaaa atctagaatt tagagtcacc attctagaac ataaagcaga
3751 aatgcaaaat cttcaagaca aatttgaaac tatgcaaatt agaaataaac
3801 cagaaataac agaaatatca gaagcaacaa cttcattagc tatgcgagca
3851 aatgaatcaa agtatataaa aacatcaatt aataaaactg caggatgtta
3901 tgtagaaaca aaaatctcat ttaataatga gaatcgaatc ataacagcat
3951 taatagattc aggttcaaca cataacataa tctgtccaac attaatacca
4001 gcatcatgga ttaataatac acatagagaa attattatgt ttgctgtgga
4051 taatagcaaa tataatctga atcaagaatt aatagacgat atcaaattac
4101 aatttcaaga agttgatgaa acttttggaa taaaatataa attaggacaa
4151 acttatgtag cacctaaacc aacaaaaaca ttcataatag gacatagatt
4201 ccttacaaat gaaaatggta gtgttacaat tcataaagac tatataacta
4251 tacagaaaac tactggcata tacccaacag ctagacatga acttaaatca
4301 gagtttgcgc gaaagcatgg tggacgaccg ccattatttt caaacattcc
4351 tgaaacttat aacaaaattc ctcatttgca ttcatatcag cctcaaccta
4401 tattaagtta taagaatgaa ataggaaatc agagtttaat tactatggtt
4451 aaggagttag aagcacttgg atttatcgga gatgatatta ctaaaaatag
4501 gacaacatgg gtatgtgact ttaaaatcat aaacccagac attaatataa
4551 cttgtgcaac aattccatat acaccagcag ataaagaagt atttgaaaaa
4601 caaattaaag aattattaga taataagtta attaagaaag ctgatccaac
4651 atgtaggcat agaacagcag catttatagt aagaaatcat tctgaagaag
4701 tagctcagaa acctcgaata gtttataact ataaacgctt gaatgataat
4751 atgcatacag atccttttaa tattcctcat aagatttcaa tgattaatct
4801 gatacagaaa gctaatatat tttctaagtt tgatctgaaa gcaggatttc
4851 atcatatgaa actaaaagat gatttcaaag attggactac ttttacatgc
4901 tcagaaggat tatatacttg gaacgtctgt ccttttggta tagccaatgc
4951 tccatgtgca tttcaaagat tcatgcaaga gtcatttgga gatttaaagt
5001 ttacattatt atacatagat gacatactta ttgcatctaa caatgaaaaa
5051 gagcatatag aacatcttaa gattttcttt aatagagtaa aagagatagg
5101 atgtgttctt agtaagaaaa aatcaaaaat gtttctaaaa gaagtagaat
5151 atcttggagt agaaattaaa gaaggaaaga ttagccttca gccacatata
5201 gttgataaaa ttaaaaaatt tgataagaat aagctcaata ctttaaaagg
5251 actacaagca tatctaggat tactcaatta tgccagagga tatatcaaag
5301 acctatcaaa gttagtagga ccactttaca aaaagacagg aaagaatggg
5351 caaagaatct ttaacaaaga agattggaat ataatcttta aaatagaaag
5401 agaggtatca aagataaagc ctttagaaag acctaaagaa accgactaca
5451 tcattataga aacagatgct tcagaagaag gctggggagc agtcttagtc
5501 tgtaagccag ataaatatag tggcaaagac actgaaaaaa tagcaggcta
5551 tgcatcagga aactttggag aaaagaaaac ctggactagt ttagattatg
5601 aaatagaagc cataaatgaa gccctaaaca agttccagat atacttagac
5651 aaagatttta caatcagaac tgattgtgaa gcaatagtga aaggaataaa
5701 aacagaagac tataagaaga gatcaaagac cagatggatc aagttaagag
5751 ataatctctt aaaagatggt tacaagccta cctttgagca tatcaagggt
5801 aacaaaaatt ttttaccaaa cttcttatcc cgtgagggag attttatttt
5851 aaaatgtctt caaaatcccg attctacgga atcatattct atagattcgt
5901 cagaatcaat tccactatat aacgattcga aagaatcaca ttctatagag
5951 tctgatgact caattccact atacagggac aagcttcttc ctctagtcga
6001 aaggctaaag gagaaaagtg cctaactaag atcggaggca tcaccatgaa
6051 tatagagtac ccgtactcaa tccacataat agacaagaac aaggttccga
6101 tctacgatca aggaaatctc ttccacactg agaagtctgc gagactttca
6151 catgtgtcca gaggtttgct ggatcatctc tttacttttt cgtctgataa
6201 tactgagcga gttaggaagc tccacatatt agccgattat ctttacctac
6251 tagaaagtga gagagagtca tatagaaatg agtggattag cctgagtgat
6301 caggttagtc tcctacaaaa acaaaatagt gagttgagag ctaggatagc
6351 cactaataaa gagataatag agggactgag agagccagtc aaaaagccaa
6401 tatacacaac ccaggataaa gagaggctcc gcgtcttctt ttgcgaagaa
6451 agaagcatgg aatatatata ctatcatata aaaaggctag ctcagcagag
6501 ctattattcc cacctaaata agttacagaa ggattgcgag ccctttcgag
6551 gggtctacat gtctttctta actaatgtta aatttctagt attatgtgaa
6601 gccggatact ggactgtacc agatatagaa actaatacca cagagtcttt
6651 attaagtcta tctcagaaga aaggaaaaga tcttctgcaa aagggagtgg
6701 taatatttaa tgagcttgaa ggaggatatc aactttctcc aaggttcatt
6751 ggagaccttt atgctcatgg ttttattaaa caaataaact tcacgaccaa
6801 ggttcctgaa ggattgccgc caatcatagc ggaaaaactt caagactata
6851 agttccctgg atcaaacaca gtcttaatag aacgagagat tcctcgctgg
6901 aactttaatg aaatgaaaag agagacacag atgaggacca atttatatat
6951 cttcaagaat tatcgatgct tctatggcta ttcaccatta aggccatatg
7001 aacctataac tcctgaagaa tttgggtttg attactacag ttgggaaaat
7051 atggttgatg aagacgaagg agaagtagta tacatctcca aaaatactaa
7101 gattattaaa gtcactagag agcatgtatg ggcttggcca gaacatgatg
7151 gagatacaat gtcctgcacc acatcaatag aagacgaatg gatccaccgt
7201 atggaaaatg cttaaagaag ctttatcaaa agcaacttta agtacgaatc
7251 aataaagaag gaccagaaga tataaagcgg gaacatcttc acatgctacc
7301 acatggctag catctttact ttagcatctc tattattgta agagtgtgta
7351 atgaccagtg tgcccctgga ctccagtata taaggagcac cagagtattg
7401 taatagatca tcgatcaagc aagcgagagc taaaacttct aagagagcaa
7451 gagaggagct tatcctctca acccctcttc aagaagcaaa ggcgatcaat
7501 ggctcaggtc agtgagtagt cgtctttaag gttcctctag gaacctctgt
7551 gtaatatgtt tgtacttatc attgtatttc tcaaaaccta tccgctgcat
7601 gaataaagct cttatattca tcctacaccc ttgtgataaa acatgaagtc
7651 atactcgttc taagattaag tgttctaaaa atacttcgaa gcattgaaaa
7701 gggggctaaa gggggaaaaa gtaccgtcag gccgtgttat ggcaagggaa
7751 gaagtaccat gaatacccta taaatgttag aaggaagata agaactaagt
7801 atcttatgaa caatgagtag ctgatttctg atattcattg acaagtatcg
7851 ttataatcca taagctttga aagatctgct agtgtggata ccaaaaggct
7901 gtcgtggttc gcccagtcga cggatgaggt tataaacgaa gcactagtag
7951 gtaactaaga ggcttaggga tgagcaacga gaaaagttag gggggtgcct
8001 agaaa