!!NA_SEQUENCE 1.0
ID BMMVRNA2P standard; RNA; VRL; 3524 BP.
XX
AC X90904;
XX
SV X90904.1
XX
DT 06-JAN-1996 (Rel. 46, Created)
DT 13-DEC-1996 (Rel. 50, Last updated, Version 4)
XX
DE Barley mild mosaic virus complete sequence of RNA2 of fungally transmitted
DE UK isolate
XX
KW complete sequence; RNA2 polyprotein.
XX
OS Barley mild mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RA Peerenboom E., Jacobi V., Antoniw J.F., Schlichter U., Cartwright E.,
RA Steinbiss H.H., Adams M.J.;
RT "The complete nucleotide sequence of RNA-2 of a fungally-transmitted UK
RT isolate of barley mild mosaic bymovirus and identification of amino acid
RT combinations possibly involved in fungus transmission.";
RL Virus Res. 40:149-159(1996).
XX
RN [2]
RP 1-3524
RA Antoniw J.F.;
RT ;
RL Submitted (17-AUG-1995) to the EMBL/GenBank/DDBJ databases.
RL J.F. Antoniw, IACR-ROTHAMSTED, Plant Pathology Department, Harpenden,
RL Herts, AL5 2JQ, UK
XX
DR SWISS-PROT; Q65657; POL2_BAMMU.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3524
FT /db_xref="taxon:12466"
FT /organism="Barley mild mosaic virus"
FT /strain="UK-F"
FT /specific_host="barley"
FT /clone="pC6"
FT CDS 143. .2827
FT /db_xref="SWISS-PROT:Q65657"
FT /gene="RNA2"
FT /product="RNA2 polyprotein"
FT /protein_id="CAA62412.1"
FT /translation="MMMNSTIRQGWQQVLRRFSIPASGDRLIVSNSTDQPIGLFGAFDT
FT SLQTLSQVTNDPEILKQKSNIPTHLDIASVLETSPRSFPWVFLTNSFCTFGGSIHAQNL
FT QAFATAEFKSGFCYMNLLIPLSFDIIDAHADSFRGFVEQLPDTLGAYPSLSMVLNVMLH
FT AATRFPEIVASPVPTIAFDAESLQFHVTDKRGVPGMWNILKACRVYELLSLAADGIGCE
FT YMLYPVGAAPQYSFWKKSMDHFISDRFVEFLAMQGLLASALEQDYKTHDARDALLTALQ
FT NAGYTNVVARERRFPNGHDPSTVWLNLNEAPISEKLTELKRYLLVGHRSDEIADITHNV
FT HQHVFEVLKTMSVQFSKTTNAYNRARFEVNHEVIWNAEYGRSSQQNAELEALVLFLNRQ
FT SLEIENILRRTTSPVVVTNWQPDVPPAAPEISEGEPTHAVATPITEAPTHATPVEVVNL
FT PPTRSYWAETLVGVLTAILGTIFALLTRALIRPKRLRRKSTFPWVSLDSGDEDDDHSGG
FT GGGSPQTPGGQPPASPAPGTHQSRFSVQDIASDTSLLSVDLDEDTLSQYDETFQTIRRA
FT LFENSFGDILQNSARWISTLEAMALADGNAPYTLLAQYLNGIEEAYTNFRNTGHISRAT
FT LSGFFVLEDSLRAAGIAFGGTTPTQTIQNQSADSPARRWKTRFEQIACELGDASIKSLA
FT DLADIIDTERERGDLTQFDVLAASSISSLCRAVRIISDTTDPNTQLALVENATAMQNNI
FT NAILGTNVSIPFLSATRRLLITRRIQEAGAESRSGATPDTIQQLADAELAEIVSEANMF
FT NEMAASQRDIANATREATIREHVLSPVNALANVGMAAAFFRSGGLRSRAFHPTMPTMPG
FT SPAAIGRPMFQAFRGRGHRLNRR"
FT polyA_site 3524
XX
SQ Sequence 3524 BP; 912 A; 990 C; 786 G; 836 T; 0 other;
X90904 Length: 3524 December 21, 2001 16:04 Type: N Check: 3756 ..
1 aaaaaataaa actacacaaa aacccaacga cttaaaacga tcacaatcaa
51 acgagcaaac acacaacaag caaacacaac agattgcagc gcacagttct
101 gaaacacgaa ctcatccact gcagtcttgg aatccgatcg cgatgatgat
151 gaactctacg attcgccaag gatggcagca agtgctcagg cgcttttcca
201 tcccagcatc cggagataga ctcatcgtct ccaattccac tgatcagccc
251 ataggtcttt tcggagcatt tgatacatca ctccaaacac tctcacaagt
301 caccaatgac cctgagattt tgaagcagaa gtccaacatc cccacgcatc
351 tagacatagc atctgtgctc gaaaccagcc ctcgatcttt tccatgggtt
401 ttcctcacaa actccttctg cactttcggt ggctccatac acgctcagaa
451 ccttcaagcc tttgcaaccg ccgagttcaa gagtggattt tgttacatga
501 acctgctgat accgcttagc ttcgacatca tcgatgcaca cgccgattcc
551 ttccgcggtt ttgtcgaaca actccctgat acgctaggtg cctatccttc
601 gctcagcatg gtactaaacg tcatgctgca cgcagctacg cgcttcccag
651 agattgttgc ttcccccgtt ccaactatag cattcgatgc tgaatcactg
701 caatttcatg taactgataa acggggcgtc cctggcatgt ggaacatact
751 taaggcctgc cgcgtgtatg agctcctctc gcttgctgcg gatggcatag
801 gctgcgagta catgctgtat cccgttggcg ctgcgcccca atactccttc
851 tggaagaaat ccatggacca cttcatatct gaccggtttg tggaattctt
901 agccatgcag ggtttgcttg ctagtgcact tgagcaggat tacaaaacac
951 acgacgcacg cgatgcatta ctcacagctc tacagaacgc aggttacacg
1001 aatgttgtcg caagagaacg gagatttcca aacggccatg acccaagcac
1051 cgtctggttg aacctgaacg aggctcccat ttcagagaag ctaactgagc
1101 tcaaacgata cctcctggtt ggtcacagaa gcgatgagat tgcggacatc
1151 acacacaacg ttcaccagca cgtcttcgag gttcttaaaa ccatgtctgt
1201 ccagtttagc aagacaacca acgcttacaa ccgcgcccgt tttgaggtta
1251 accatgaggt gatatggaat gcagagtacg gacgcagttc tcaacaaaac
1301 gctgagctcg aagcccttgt tctatttctc aatagacagt cgctagagat
1351 cgaaaacatt ctgcgcagaa caactagtcc cgttgttgtg acgaactggc
1401 agcctgatgt tcctcccgca gcacctgaaa tcagcgaagg ggagccaacg
1451 catgcagtcg caacaccaat aactgaggca ccaacacatg caactcctgt
1501 tgaagttgtg aatttgccac caacacgctc ttattgggcc gaaacactcg
1551 ttggtgtgtt aaccgcaatt ttgggaacca tcttcgcctt gctcactcgg
1601 gcgctcattc gcccaaagag gctgcggaga aaatccacct ttccctgggt
1651 gtcactagac tctggagacg aagatgatga ccattctggt ggaggaggag
1701 gtagcccaca aacacccggc gggcagcccc cagcctcgcc agcacccgga
1751 actcaccagt cgcgcttttc cgtgcaagat atagcatcgg acacgagcct
1801 actgagtgtg gaccttgatg aagacacact ctcccagtac gacgaaactt
1851 tccagacaat tcgtcgtgcg ctcttcgaga acagttttgg agacatcctg
1901 caaaactcag ctcgctggat ctccacactg gaggcgatgg ctcttgcaga
1951 tggcaatgcc ccttacacgc tccttgcgca gtaccttaac ggaatcgagg
2001 aggcatacac aaactttcgc aacacagggc atatctcccg tgcaacattg
2051 tcaggcttct tcgttctgga ggatagtctg cgtgcggctg gcatagcttt
2101 tgggggcaca acgcccacgc aaactataca aaaccagtct gctgactccc
2151 cagcccgtcg atggaaaaca cgctttgagc agatcgcatg cgaactaggt
2201 gatgctagca tcaagtcgct tgcagatctt gcagacatca tcgacactga
2251 gcgtgagaga ggagacttaa ctcagtttga tgttctcgca gcttcctcca
2301 taagcagtct ctgccgcgct gtccgtatta tcagtgacac aactgatcca
2351 aacacacaac tagctcttgt cgagaacgca actgctatgc aaaacaacat
2401 aaacgccatc ctaggcacga atgttagcat ccctttcctc agcgcaacgc
2451 gtcgcctgct cataacacgt cgcattcaag aagctggagc ggagagccgc
2501 tctggcgcaa cgccagacac catacagcag ctcgccgatg ctgagctagc
2551 ggaaattgtc agcgaggcaa acatgttcaa tgagatggct gctagtcaga
2601 gagatattgc caatgcaaca cgcgaagcta ccattcgtga gcatgtactt
2651 agtcctgtta atgccttggc caatgttggc atggcggctg ctttcttccg
2701 atctggtggt ttgcgttcga gggcttttca tcccacaatg ccaacaatgc
2751 ctggtagtcc tgccgccata gggcggccaa tgtttcaagc ctttagagga
2801 cgagggcacc gtctcaatag acgttaaaac cctgtgcttt ggcacagcac
2851 tgaacaagcg acacgcgctt gttgtgataa ttgattccac gcttagcgtg
2901 ccactgaaca aacgacacac gtttgttgtg ataattaatt aatttttgcg
2951 cagactctgt ctgtgttttc tagagtgtgc tgctcggcag ctgcatcgga
3001 gggttttacg ggaacgacat catcacaccc catccacaaa ccgccctgca
3051 ttcacatctt tgtgccactt taaatactca tacgcatagg caagtgcctt
3101 tccggcagag catcccctgg catcgacact cacgcgatcg caatcaactg
3151 acttaatcct cggttttgca atcatatagt gagttctacc cctggacgtg
3201 ttcccccgga actgcaatcc tcgttatgtt gtcgctgatt actatcagct
3251 cgtaaaccat gatatccacc cacaattagc tattcgtgta ctagcatcat
3301 cggatacgcc tatcctgcac ttaagcctgc aggacgctat caggtccgct
3351 gactgttacc atttgtgtag ctcgttgtgg ttccgcctca tatctaaatt
3401 cagtacctgc atacaaaacg tcatgcatcc ctgttcaaca tgagcacggg
3451 tttgggaaga agcaagtcat catagactgc tggcattgtt aggttgacaa
3501 tgcttatgta cacaggaacg tgac