ID AB250687; SV 1; linear; genomic RNA; STD; VRL; 4269 BP.
XX
AC AB250687;
XX
DT 17-FEB-2007 (Rel. 90, Created)
DT 31-JUL-2009 (Rel. 101, Last updated, Version 3)
XX
DE Melon necrotic spot virus genomic RNA, complete genome, strain: Yamaguchi.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4269
RA Tsuda S.;
RT ;
RL Submitted (16-FEB-2006) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shinya Tsuda National Agricultural Research Center, Dept. of Plant
RL Pathology; Kan-non dai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan
XX
RN [2]
RA Kido K., Tanaka C., Mochizuki T., Kubota K., Ohki T., Ohnishi J.,
RA Knight L.M., Tsuda S.;
RT "High Temperatures Activate Local Viral Multiplication and Cell-to-Cell
RT Movement of Melon necrotic spot virus but Restrict Expression of Systemic
RT Symptoms";
RL Phytopathology 98:181-186(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4269
FT /organism="Melon necrotic spot virus"
FT /strain="Yamaguchi"
FT /mol_type="genomic RNA"
FT /country="Japan:Yamaguchi"
FT /isolation_source="Melon"
FT /db_xref="taxon:11987"
FT CDS 90. .2465
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:894. .896,aa:OTHER)
FT /gene="p88"
FT /product="p88k-polymerase"
FT /note="readthrough product"
FT /db_xref="GOA:A2V6E7"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:A2V6E7"
FT /protein_id="BAF47099.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIANSIITYGEEVVEQVKVDIDE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS
FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND
FT KKELEPAPKPLSGVFDRLTWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL
FT EGLSVQRRDAYLKTFVKAEKINTTRKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG
FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY
FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRSRGIRARLMNNGDDCVVMCEKECAAVVKADMVRHWRQFGFQCELECDAEVFEQIE
FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV
FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT
FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL"
FT CDS 90. .896
FT /codon_start=1
FT /transl_table=1
FT /gene="p28"
FT /product="p28k-polymerase"
FT /db_xref="UniProtKB/TrEMBL:A2V6D8"
FT /protein_id="BAF47100.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVATVIGIGYLGVRIGAAWCRRTPGIANSIITYGEEVVEQVKVDIDE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSVAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN"
FT CDS 2444. .2641
FT /codon_start=1
FT /transl_table=1
FT /gene="p7"
FT /product="p7k"
FT /db_xref="GOA:Q006Z8"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:Q006Z8"
FT /protein_id="BAF47101.1"
FT /translation="MDPQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNF"
FT CDS 2645. .2830
FT /codon_start=1
FT /transl_table=1
FT /gene="p9"
FT /product="p9k"
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProtKB/TrEMBL:Q8UYH9"
FT /protein_id="BAF47102.1"
FT /translation="MACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDN
FT SSVKTQYVGISTNGDG"
FT CDS 2817. .3989
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="CP 38k"
FT /db_xref="GOA:A2V6F1"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:A2V6F1"
FT /protein_id="BAF47103.1"
FT /translation="MAMVKRINNLPTVKLAKQALPLLTNPKIVNKAIDVVPLVVQGGQK
FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI
FT ASVLPSNDLTVNNGDTNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRVTYIPTTGS
FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSSPWAENVLVVPCDNTWRYMNDTNAV
FT DRKLVDFGQFLFATYSGTGATAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGST
FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVSIVLNATSIGSLTFTGNSKLVGNSLNVT
FT SSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA"
XX
SQ Sequence 4269 BP; 1067 A; 878 C; 1071 G; 1253 T; 0 other;
ab250687 Length: 4269 31-JUL-2009 Type: N Check: 817 ..
1 gggattactc tagccgaatc cccgactttc ttggtttctg tgagttagtt
51 cgtatattgg ttgtctatct taatcaatac aggttagcaa tggatactgg
101 tttgaaattt cttgtttctg gaggtttagc cacctcatct gttatcagga
151 aagtgagtgc tgtgagttca ttggattcgt cccttccttc atcgtctata
201 ctatctgcca ttcatgggtc ttggactagt gctatcagcc acgattgtag
251 caagatcgcc aaggttgcca ccgtaattgg aattggttat cttggggttc
301 ggattggtgc cgcatggtgt cgtcgtaccc ccgggatagc gaactctata
351 attacatatg gggaagaagt ggttgagcaa gtaaaggtgg atattgatga
401 agatgctgaa gaggagtccg ataccggtga ggaaattgtg gttggcacga
451 taggtattgg tatacacact aacgtcaacc ctgaagttcg agctaagcgt
501 agacatagat cgaggccatt cattaagaaa attgtgaatt tgacgaaaaa
551 tcactttggt ggatgtcccg attcaagtaa atcgaacgtc atggctgtta
601 gcaaatttgt ttatgaacaa tgtaaacagc acaattgtct tccacatcag
651 acgagattga tcatgagtgt tgcagttcca ttggtgttaa gtcccgacat
701 gtacgacatt tccagtaaag ctctgttaaa cagcgagata ttaacagaaa
751 acagagccac actggaccgc ctcaaaactc ttgatgggtg gctgtcacat
801 ttagtgtgcc acccccttag cgcgaaggct tggaggcggg cgattgacaa
851 cttgtgtggt cttcctgatt ggaaggcctt caagttggtc aactaggggt
901 gcctagagga actcgctggg ttctgtactt cggtacggag agggacgcac
951 ccagacatga ccgagtttcc tcaggatcgt cccattaaga cacgcaaact
1001 gtattgtttg gggggagttg gaactagcgt gaagttcaat gtgcacaata
1051 actctctagc caaccttcgg cgcggtctca tagaacgcgt tttctttgtt
1101 gaaaatgata agaaggaact agagcctgcc cctaaacccc ttagtggtgt
1151 gtttgatcgc ttaacctggt ttcgtcggaa actccataat attgtgggta
1201 ctcattccag tattagtcca ggtcaattct tggattttta tactggcagg
1251 aggcgtacaa tttatgaagg tgccgtgaag tcattggagg ggttaagtgt
1301 tcaaagaagg gatgcctatt tgaaaacgtt tgttaaggcg gagaagatta
1351 acaccactag gaagcctgac ccagctccgc gggtcataca accgaggaac
1401 gtaagatata atgttgaggt tggtcgttat ctacgtaggt ttgagcatta
1451 cctctatcga ggaattgatg aaatctggaa tggccccacg ataattaaag
1501 gatacactgt cgagcaaatt gggaaaatcg ctcgcgatgc ttgggactct
1551 ttcgtgagcc ccgtggcaat cgggtttgat atgaagaggt tcgaccaaca
1601 tgtatcctcc gacgctctta aatgggaaca tagtgtttat cttgatgctt
1651 tttgccatga ttcttatctt gcagaattgt tggagtggca attagtcaat
1701 aagggagtcg ggtatgccag tgatggaatg atcaaatata aggttgatgg
1751 gtgccggatg agtggtgata tgaatacagc tatgggtaac tgtctgattg
1801 cctgtgccat cacacatgat ttcttccgta gtcgtggcat cagggcgcgt
1851 ttgatgaaca atggtgatga ctgtgtcgta atgtgcgaaa aagaatgtgc
1901 cgcggtggtt aaagccgaca tggtaaggca ctggagacaa ttcgggtttc
1951 aatgtgagct cgaatgcgac gcagaagtct tcgagcaaat tgagttttgt
2001 caaatgcggc ctgtgtacga cggggaaaaa tatgtgatgg tgcggaatcc
2051 gttagttagt ctgtctaaag attcatactc agtcggccca tggaatggaa
2101 tcaaccatgc acgcaagtgg gttaatgctg ttggcttgtg tggcttatcc
2151 ctcactggtg gaattcctgt tgtccaaagt tactataata tgatgattcg
2201 taacactcag tccgtgaaca gttctggcat tctccgggat gtcagttttg
2251 ctagtggatt tcgggagtta gcgcgattgg gtaacaggaa aagtggtgct
2301 atatcagaag acgcccgttt tagcttttat ctcgcatttg gcattactcc
2351 agatttacaa cgtgccatgg aaagtgacta tgatgctcat accatagagt
2401 ggggtttcgt gccccaggga aatcctagaa tacagccaat ctcatggacc
2451 ctcaacgaac tgtagaacaa actaatcctc ggggaagaag taaagaacgt
2501 ggtgacagcg ggggaaaaca gaagaactca atggggcgaa agatagccaa
2551 tgatgctatc tctgaatcga agcagggagt tatgggtgct agcacataca
2601 tcgctgataa aattaaggta actatcaact ttaattttta gtgtatggct
2651 tgttaccgtt gtgactccag ccccggggat tactctggag ctctgcttat
2701 attatttatc tcatttgttt tcttctatat tacctcgctt agcccgcaag
2751 gaaatactta cgtacaccac ttcgataatt cttccgttaa gacgcaatac
2801 gttggcatct ctacaaatgg cgatggttaa acgcattaat aatttaccaa
2851 cagtgaagct tgctaagcag gctctgcccc tgctaacgaa tcctaaaatt
2901 gtgaataagg ccatagatgt ggttcctttg gtcgtccagg gtggtcagaa
2951 attgtccaaa gctgccaagc ggttgcttgg cgcttatggt ggtaacattt
3001 cttacactga gggcgccaag cctggtgcta tatccgctcc agttgccatt
3051 agtaggcgag tggcggggat gaagcctagg tttgttcgat ccgaaggatc
3101 tgtgaagata gttcataggg agtttattgc ctctgttctt ccgtcgaatg
3151 atctcaccgt gaacaatggt gataccaata tcggtaagta cagggtcaat
3201 cccagtaata acgctttatt cacatggctt cagggacaag cgcaattata
3251 tgatatgtac agatttactc ggcttcgagt tacctatatt ccaactaccg
3301 gatccacttc cacaggtcgt gtttctatcc tttgggatag agactctcag
3351 gatcccctcc ctattgaccg cgccgctatt agttcttatg ctcattacgc
3401 agattcatcg ccttgggcag agaacgtttt agtggttcca tgtgacaata
3451 cgtggaggta tatgaatgat actaatgcag tggaccggaa gttggttgat
3501 tttgggcagt ttctctttgc cacttattct ggtactggtg ccaccgccca
3551 tggtgatctc tacgttgagt acgctgttga attcaaagat ccccagccga
3601 tcgctggaat ggtgtgtatg tttgatcgct tggtctcttt ctctgaagtc
3651 ggatctacaa ttaaaggagt caattatatt gctgatcgtg atgtgataac
3701 tacggggggt aatattggtg tcaacatcaa tattcccggg acttatctcg
3751 tctcgattgt tcttaatgcc acatcaattg gctccctcac cttcactggt
3801 aattctaaac ttgtaggcaa tagtcttaac gttaccagca gtggtgcttc
3851 tgctcttaca tttaccctta actccactgg tgtgcccaac agttccaatt
3901 cttcattctc tgtgggcact gttgttgcat tgactagggt ccgtatgacg
3951 atcactcgct gctctcctga aactgcctac ctcgcctaga tttaatttac
4001 tatactccaa atctggtctc tcttatacct acctgttctc agccagatct
4051 ctgttctggt gtcctatagg tgtccttgtc gtgtgtagtg cggtctggct
4101 aaccgtaacg gcgtatcggc ttggttctcc gatgattagg ctccgggatg
4151 tacgacatag ttgaagatgg atggtgtttg gtagatcacc gctagcaaaa
4201 tacactctgt gtggggcgtg ctagtggata gtcatgtatg tttgagatgg
4251 gttataggcc catcccgcc