!!NA_SEQUENCE 1.0
ID   AF000720   standard; RNA; VRL; 1884 BP.
XX
AC   AF000720;
XX
SV   AF000720.1
XX
DT   05-DEC-1997 (Rel. 53, Created)
DT   02-JAN-2000 (Rel. 62, Last updated, Version 2)
XX
DE   Colorado tick fever virus M5 segment, complete sequence.
XX
KW   .
XX
OS   Colorado tick fever virus
OC   Viruses; dsRNA viruses; Reoviridae; Coltivirus.
XX
RN   [1]
RP   1-1884
RX   MEDLINE; 98033199.
RA   Attoui H., De Micco P., de Lamballerie X.;
RT   "Complete nucleotide sequence of Colorado tick fever virus segments M6, S1
RT   and S2";
RL   J. Gen. Virol. 78(11):2895-2899(1997).
XX
RN   [2]
RP   1-1884
RA   Attoui H., de Lamballerie X., Cantaloube J.F., De Micco P.;
RT   ;
RL   Submitted (22-APR-1997) to the EMBL/GenBank/DDBJ databases.
RL   Virologie, Faculte de Medecine, BD J Moulin, Marseille 13005, France
XX
DR   SPTREMBL; O55265; O55265.
DR   SPTREMBL; O93214; O93214.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1884
FT                   /chromosome="M5 segment; segment 9"
FT                   /db_xref="taxon:46839"
FT                   /note="40 passages in BHK-21 cells"
FT                   /organism="Colorado tick fever virus"
FT                   /strain="Florio strain; ATCC reference VR-90"
FT   CDS             41. .1849
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O55265"
FT                   /note="one of three different amino acids (arginine,
FT                   cysteine or tryptophan) is incorporated at amino acid
FT                   position 338 during read through"
FT                   /transl_except=(pos:1052. .1054,aa:OTHER)
FT                   /product="VP9'"
FT                   /protein_id="AAB88255.1"
FT                   /translation="MFGYLQLINPTTDIYIKDYGNFSGIVAHQAYDPVRRDHMLLRSMK
FT                   LHFGPNSKLLWLGDFHAITLSHANMIFGASSVGFKGVNVSTLPPDTLTTGIRPRPVVTM
FT                   DFAQLKGFYSDLAQKEDYIMYFHDMVKFVSQTGGAPVSLRDVFLWISESVTGPVVIRTD
FT                   CVTGCNNLWPSGSGHFYFPYERKTKFRYGTFVECGKNLTWSEGPQWDVKSYVVGFNFVT
FT                   RANSLLGGGFDEVCYRLMMQAEVPRQVAEQGLTLEQAVRKLASEHHMSRPQLTSRRVPG
FT                   ITDQTKYEAYVVCGPFRTGQVVADSLQMAEDLAWREMLGTLKTLIHDEARQTKGCCXRC
FT                   WPGELYLINIESAGFREGASAAAAYQAGFLRAFYGCLNTSVCSFSSLDDGLRWLCTRLS
FT                   TKSIGAKGRTVVLFGCHSEGEVLADGFGKTYSAAEAREQVALSGKIGGSAQVIVVWQRC
FT                   RESKLQRLLPELAMVSYVPEEVVAGFKRVRELETYPQWCLWLYRSMIESMGGIDVGVRD
FT                   ASPLTESGVVYQVEAAQYGMRTTRVRRADGTLDYQGLSWTSLLMLLLGHYGADQTYEAL
FT                   RVSSMFIRAREVGWRKRGTFSCIVST"
FT   CDS             41. .1054
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:O93214"
FT                   /product="VP 9"
FT                   /protein_id="AAB88254.1"
FT                   /translation="MFGYLQLINPTTDIYIKDYGNFSGIVAHQAYDPVRRDHMLLRSMK
FT                   LHFGPNSKLLWLGDFHAITLSHANMIFGASSVGFKGVNVSTLPPDTLTTGIRPRPVVTM
FT                   DFAQLKGFYSDLAQKEDYIMYFHDMVKFVSQTGGAPVSLRDVFLWISESVTGPVVIRTD
FT                   CVTGCNNLWPSGSGHFYFPYERKTKFRYGTFVECGKNLTWSEGPQWDVKSYVVGFNFVT
FT                   RANSLLGGGFDEVCYRLMMQAEVPRQVAEQGLTLEQAVRKLASEHHMSRPQLTSRRVPG
FT                   ITDQTKYEAYVVCGPFRTGQVVADSLQMAEDLAWREMLGTLKTLIHDEARQTKGCC"
XX
SQ   Sequence 1884 BP; 431 A; 385 C; 548 G; 520 T; 0 other;

AF000720  Length: 1884  December 21, 2001 14:43  Type: N  Check: 3632  ..
       1  gacattttgt gtcacgaacg ttcaccctgc gttcagcatc atgtttggat
      51  atctgcagct catcaacccc accactgaca tttacattaa agattatgga
     101  aacttttctg ggattgttgc acaccaagct tatgaccctg tccgccgaga
     151  ccatatgctt ttgagatcaa tgaaattgca ctttggacca aattcaaaat
     201  tactatggct aggcgatttt cacgccatca ccctgtcaca tgcaaatatg
     251  atatttggag caagctcggt cggatttaag ggcgttaatg tgtctacttt
     301  gccccctgac accctgacga ctggcattcg ccctcgcccc gtagtcacaa
     351  tggattttgc acagctaaaa ggtttttaca gcgacttagc tcagaaggag
     401  gattacatca tgtatttcca tgacatggtg aagtttgtca gccagacagg
     451  aggtgctcct gtatcattga gagatgtgtt cttgtggatt agtgaaagcg
     501  tgaccgggcc tgttgtcatt cggacagatt gtgttacggg ctgcaacaac
     551  ttatggccaa gtggtagtgg acacttttat ttcccttatg agaggaagac
     601  caaattcagg tatggcacgt ttgttgagtg tggcaaaaat ttgacttggt
     651  ccgaagggcc tcagtgggat gtgaagagtt atgttgtggg ctttaacttt
     701  gtcacacgag cgaactcgct gcttggtggg ggttttgacg aggtttgcta
     751  tcgattgatg atgcaggcgg aagtgcctcg gcaggttgca gagcaaggat
     801  tgacacttga acaagcagtt cggaagttgg cgtcagaaca tcacatgtct
     851  agaccgcaat tgacttcacg ccgagtgcct ggaatcacag accagacaaa
     901  gtatgaggct tacgtggtat gtggtccttt ccgaactgga caggtagtgg
     951  ctgattcttt gcagatggct gaagatctgg cgtggcgaga gatgcttggt
    1001  actctgaaaa cattgattca cgatgaagcg cgtcaaacca agggctgctg
    1051  ttgacggtgt tggcctggtg agctgtacct cattaacatc gagagtgcag
    1101  gctttcgtga aggagcttca gcggctgcgg cttaccaggc gggctttttg
    1151  cgtgcttttt atgggtgtct gaatacatct gtgtgttcct tttcgtcttt
    1201  ggatgatggg ttgaggtggc tgtgcacacg attgagcaca aaatccattg
    1251  gcgcaaaagg acgaaccgtg gttctgtttg gatgtcactc ggagggtgag
    1301  gtactggcag atggattcgg aaaaacatat tcagcagcag aggcgcgtga
    1351  gcaggtagcc ctgtcgggaa aaatcggtgg gagtgctcaa gtgattgttg
    1401  tgtggcaacg ttgtcgtgag tccaaactcc aaaggttgct gcctgaattg
    1451  gctatggtgt cttatgtgcc agaggaggtt gttgcaggct ttaagcgagt
    1501  gcgggagctt gagacctacc cccaatggtg tctatggtta tatagaagta
    1551  tgattgagtc tatggggggt attgatgttg gcgtgcgcga cgcatctccg
    1601  ttaactgaga gcggggttgt ttatcaggtg gaggctgctc agtacggaat
    1651  gcgaacgacg cgagtgagga gggcagatgg cacgcttgat taccagggtc
    1701  tgagttggac atcgttgttg atgctgttgt tgggtcacta tggggctgac
    1751  cagacgtatg aggctcttcg cgtcagttcc atgttcatcc gtgctcgtga
    1801  agtcggctgg cgcaagaggg ggaccttttc ctgcatagta tccacatgat
    1851  gtgacacacc ctcatatagg gaatccttgc agtc