!!NA_SEQUENCE 1.0
ID AF113830 standard; circular DNA; VRL; 8006 BP.
XX
AC AF113830;
XX
SV AF113830.1
XX
DT 14-MAY-1999 (Rel. 59, Created)
DT 03-MAR-2000 (Rel. 62, Last updated, Version 4)
XX
DE Rice tungro bacilliform virus strain RTBV-G1, complete genome.
XX
KW .
XX
OS Rice tungro bacilliform virus
OC Viruses; Retroid viruses.
XX
RN [1]
RP 1-8006
RX MEDLINE; 99394699.
RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H.,
RA Koganezawa H., Azzam O.;
RT "Sequence changes in six variants of rice tungro bacilliform virus and
RT their phylogenetic relationships";
RL J. Gen. Virol. 80(Pt 8):2229-2237(1999).
XX
RN [2]
RP 1-8006
RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H.,
RA Koganezawa H., Azzam O.;
RT ;
RL Submitted (16-DEC-1998) to the EMBL/GenBank/DDBJ databases.
RL Entomology and Plant Pathology, International Rice Research Institute,
RL P.O.Box 933, Manila, Luzon 1099, Philippines
XX
DR SPTREMBL; Q9WQY1; Q9WQY1.
DR SPTREMBL; Q9WQY2; Q9WQY2.
DR SPTREMBL; Q9WQY3; Q9WQY3.
DR SPTREMBL; Q9WQY4; Q9WQY4.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8006
FT /country="Philippines"
FT /db_xref="taxon:10654"
FT /note="greenhouse isolate from the International Rice
FT Research Institute"
FT /organism="Rice tungro bacilliform virus"
FT /strain="RTBV-G1"
FT /clone="G1-10"
FT CDS <68. .667
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9WQY4"
FT /evidence=NOT_EXPERIMENTAL
FT /note="ORF1; translation start site unknown"
FT /product="P24"
FT /protein_id="AAD30188.1"
FT /translation="VPKRNLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC
FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP
FT TKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE
FT LRTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST"
FT CDS 664. .996
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9WQY3"
FT /note="ORF2"
FT /product="P12"
FT /protein_id="AAD30189.1"
FT /translation="MSADYPTFKEALEKFKNLESDTVSKDKFNWVFTLENIKTTADVNL
FT ASKGLVQLYALQEIDKKINNLTAQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI
FT KRKYPA"
FT CDS 993. .6026
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9WQY2"
FT /note="ORF3"
FT /product="polyprotein P194"
FT /protein_id="AAD30190.1"
FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE
FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN
FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG
FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD
FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKAFIYQNLQGGESLR
FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELLEVIQQLEREKQ
FT AMIEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE
FT TEEITEWENPNRVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE
FT KAQSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPVEASKDRNFERI
FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI
FT TGLVLYLVQDWIAKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR
FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG
FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTHKKASLAFCRSIYTIGDYKKRKILKRVTN
FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS
FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKICET
FT QYCKTCADQLAIDVREVKKPTKEESMIEDLKLNVKNLEFRVTILEHKAEMQKLQDKFET
FT MQIRNKPEMTEISEATTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALID
FT SGSTHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIK
FT YKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFAR
FT KHGGRPPLFSNIPETYNKIPHLHSYQAQPILSYKNEIGNQSLITMVKELEALGFIGDDI
FT TKNRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRT
FT AAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKA
FT GFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFTLLYID
FT DILIASNNEKEHIEHLKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPH
FT IVDKIKKFDKNKLNTFKGLQAYLGLLNYARGYIKNLSKLVGPLYKKTGKNGQRIFNKED
FT WNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGY
FT ASGNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSK
FT TRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSE
FT SIPLYNDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA"
FT CDS 6047. .7216
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9WQY1"
FT /note="ORF4"
FT /product="P46"
FT /protein_id="AAD30191.1"
FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL
FT FTFSSDNTERVRKLHILADYLYLLESERESYRNEWISLSDQVSLLQKQNSELRARIATN
FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD
FT CEPFRGIYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGKDLLQKGVVIFN
FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE
FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED
FT KGEVVYISKNTKIIKVTREHAWAWPEHDGGTMSCTTSIEDEWIHRMDNA"
XX
SQ Sequence 8006 BP; 3264 A; 1245 C; 1444 G; 2053 T; 0 other;
AF113830 Length: 8006 December 21, 2001 14:52 Type: N Check: 3055 ..
1 tggtatcaga gcgatgttcg aactttaagg gaaaatagaa tacaatctag
51 tcaaactaat tacataagtt ccgaagagga atcttatttc tcaaaacatt
101 gagtcacgat acgaaaaact tgaattctta gacttagcag tctggggaaa
151 agagaaaaaa caaaaatatt tactatctac cgataatatt agcttttatt
201 gttactttga tactagtaaa actagtgaat cagaaagaaa gcataccttt
251 cattctgata ataagcaact taatagtatt gtagatctta ttattaagca
301 ttctgaaaaa accaaaaata ttaaggaaga attagaaaaa tatagtcagt
351 tcctagataa gatattagat ttaaaaccta ctaaaaaaca agtcgaaaaa
401 ctattagaaa atcaaaactt aattagcaag aactttgatt atatcaaaga
451 acaaaacact cagctagaaa aatcactaag aaaaacagtt aagttagaag
501 actccattaa tactttatta gtagaaatac aacaagctag acctaaggaa
551 gtagaattaa ggactcttaa aatagcagag cagaactcta aggcaataga
601 aaaatttgaa caagaaatta aggatctaag agaaatctta gaatacctta
651 agcaccaatc tacatgagcg ctgattatcc aactttcaag gaagcccttg
701 aaaaatttaa aaacctagaa tcagatacag tttctaaaga taagtttaat
751 tgggtattta ctttagaaaa tataaaaaca actgcagacg taaacctagc
801 atctaaagga ttagtacaac tttacgccct acaagaaatt gataaaaaga
851 taaataatct tacagcccaa gtaagtaagt tacctacaac tagtggaagt
901 agttcagcag gagctatagt acctgcaggt agtaacaccc agggtcaata
951 taaagcacca cctaagaaag gaattaaaag aaaatatcca gcatgagtct
1001 tagaccattt actggtactt ctagaactat aacccaagat tcaacttctg
1051 aatctaatat aaaaaaggga aaaaattcaa caaaaagaga attaatagaa
1101 gaagtagatg ttaatcagga agtagaaaac tttgattgga aaaaattatc
1151 aggtattaaa cctaataaat tatatgagaa aaactggcaa gaaaaggtta
1201 agttaaagca acaatctata gtttcagcat ataaagagga agctattagc
1251 gtaactcata atgcatatac tactacttta tttccacaag aagtaattaa
1301 gaatgttaaa aatcagggaa aactttatta tcatataggc atgatggcca
1351 taggagttaa aggacttcat agaagaaaaa taggaactaa agttatgata
1401 atgttctatg atgatagttt cggtaaagct agagaagcta gcatcggatc
1451 aatagaaatg gatatgaacg ccggttgcgg agtattttac tcctgccccg
1501 actttgcaaa atatattaaa gatttatcac atcttaagat agggatacaa
1551 accctaggat atgaaaacta tgaaggaaaa aacctttcag tagcaatcaa
1601 aactatagga agattaacca ccaatataca atcaaaatat aagataaatg
1651 tgaaagatat tgtggaacaa atatcatcac aaggaatcat tatggtagca
1701 cccatggaaa tagattcatc acacttagat ggaaatgaat gggatctaag
1751 taaattccta aaccatgaaa acacaagtag agtcccaacc aaagccttta
1801 tatatcagaa tctacaagga ggagaatcct taagattctc aaactataag
1851 caaactagaa tgcatgatcc tactgagaat aattcagatg aggatgaaga
1901 tttaaaaatc ttaggagaac aattaaacat taaaatggca agattttaca
1951 caatgcaaac cccagaggaa gaattactag aagtaattca acaattagaa
2001 agagaaaaac aagccatgat agaaaaacta gaagccaaaa tgaaagaatc
2051 atccaaaatg gcgatagtag aagataattt caacccaaac aatgaatatc
2101 tagaagatac atattccgaa tatgaagacc tagaatttga aaaattagga
2151 ctaactggat gggaagactt agaccaggat tccatagaaa ccgaagaaat
2201 aaccgaatgg gaaaatccta atcgggtact tcatagagaa attagagcat
2251 acaaatcagt ctctgaacaa atagaagata tatttggaga attactaaaa
2301 gaacatggaa actatgatat ggcccttaaa aacttagaag aaaaatatga
2351 cctagacaaa atagaaaaag cccaatctat agaagaaata gccaaatcat
2401 ctacatcgtc agaaattagg ccaactaaac gacctaaaga agaacaaaca
2451 gcctatgaag atgatatgag agatgactgg aaaagaaagg aattaacagt
2501 aaatcctgta gaagcctcaa aggatagaaa ctttgaaaga ataggatcat
2551 cctataagaa gaacttttac cctagtcgaa gtgaaatatt aaacctagat
2601 aatgttcccc cacaatttta ttacgaccaa ttagtaacat gggaaggaat
2651 agttaaaaat gaatgggaag cacgaaagaa agacggcatg gatatgtggt
2701 cttggatgga tggaagaata acaggattag tcctatactt agtccaagat
2751 tggatagcta aaaatcaagc cgcctacaat gatataaaat ctagaggtga
2801 tagacctgaa aacttcgtaa aaatggtaaa agataggttc ttaatagaag
2851 atcctacaga tgaaagaaga actgcattac aaaggttagc acaaagagaa
2901 ttagaagcct taaactgcga agatcctacg aaaattcaac catttatggc
2951 tgaatatctt aagaaagcct cagaagccaa aaaaggattc gatgtagttt
3001 atgtagaaag actctttgat agactaccag aagcagtagg aaaggtagta
3051 aaggctgact ttgtcaaaga tggtaattcc tatgaagcag gaataggaat
3101 agcagtttca tacatatcta catggatgag agcaaaatgc attaaggaaa
3151 cagaagctaa aacccataag aaagcatctt tagcattctg cagatccata
3201 tatactatag gagactataa gaaacgaaaa atcctaaaaa gagttacaaa
3251 ttataataaa aataggagaa agaactacgt cagaagacct agtattaaga
3301 aaaaatgtag atgttatatc tgtcaagatg agaatcacct agccaataga
3351 tgtcctagaa gatataccaa tcaggctaga gcaagtctaa tagatggatt
3401 agatgaagat atagtatcaa tagcatcaga cgatgaagat atcgaaaatt
3451 tccttgaaat aatagaactt gatgagttta tagcacattc tagtcaggaa
3501 cacgaacata catgggaaat tggaggaaag aaagataagg tatgtgaaat
3551 atgcagttat tttacagact ataataaaac tgttagttgt aaaatttgtg
3601 aaacccaata ctgcaaaaca tgtgctgatc aactcgcaat agacgtaaga
3651 gaagttaaaa aacctaccaa agaagaatca atgatagaag atttaaaatt
3701 aaatgtcaaa aatctagaat ttagagtcac cattctagaa cataaagcag
3751 aaatgcaaaa gcttcaagac aaatttgaaa ctatgcaaat tagaaataaa
3801 ccagaaatga cagaaatatc agaagcaaca acttcattag ctatgcgagc
3851 aaatgaatca aattatataa aaacatcaat taataaaact gcaggatgtt
3901 atgtagaaac aaaaatctca tttaataatg agaatcgaat cataacagca
3951 ttaatagatt caggttcaac acataacata atctgtccaa cattaatacc
4001 agcatcatgg attaataata cacatagaga aattattatg tttgctgtgg
4051 ataatagcaa atataatctg aatcaagaat taatagacga tatcaaatta
4101 caatttcaag aagttgatga aacttttgga ataaaatata aattaggaca
4151 aacttatgta gcacctaaac caacaaaaac attcataata ggacatagat
4201 tccttacaaa tgaaaatggt agtgttacaa ttcataaaga ctatataact
4251 atacagaaaa ctactggcat atacccaaca gccagacatg aacttaaatc
4301 agagtttgcg cgaaagcatg gtggacgacc gccattattt tcaaacattc
4351 ctgaaactta taacaaaatt cctcatttgc attcatatca ggctcaacct
4401 atattaagtt ataagaatga aataggaaat cagagtttaa ttactatggt
4451 taaggagtta gaagcacttg gatttatcgg agatgatatt actaaaaata
4501 ggacaacatg ggtatgtgac tttaaaatca taaacccaga cattaatata
4551 acttgtgcaa caattccata tacaccagca gataaagaag tatttgaaaa
4601 acaaattaaa gaattattag ataataagtt aattaagaaa gctgatccaa
4651 catgtaggca tagaacagca gcatttatag taagaaatca ttctgaagaa
4701 gtagctcaga aacctcgaat agtttataac tataaacgct tgaatgataa
4751 tatgcataca gatcctttta atattcctca taagatttca atgattaatc
4801 tgatacagaa agctaatata ttttctaagt ttgatctgaa agcaggattt
4851 catcatatga aactaaaaga tgatttcaaa gattggacta cttttacatg
4901 ctcagaagga ttatatactt ggaacgtctg tccttttggt atagccaatg
4951 ctccatgtgc atttcaaaga ttcatgcaag agtcatttgg agatttaaag
5001 tttacattat tatacattga tgacatactt attgcatcta acaatgaaaa
5051 agagcatata gaacatctta agattttctt taatagagta aaagagatag
5101 gatgtgttct tagtaagaaa aaatcaaaaa tgtttctaaa agaagtagaa
5151 tatcttggag tagaaattaa agaaggaaag attagccttc agccacatat
5201 agttgataaa attaaaaaat ttgataagaa taagctcaat acttttaaag
5251 gactacaagc atatctagga ttactcaatt atgccagagg atatatcaaa
5301 aacctatcaa agttagtagg accactttac aaaaagacag gaaagaatgg
5351 gcaaagaatc tttaacaaag aagattggaa tataatcttt aaaatagaaa
5401 gagaggtatc aaagataaag cctttagaaa gacctaaaga aaccgactac
5451 atcattatag aaacagatgc ttcagaagaa ggctggggag cagtcttagt
5501 ctgtaagcca gataaatata gtggcaaaga cactgaaaaa atagcaggct
5551 atgcatcagg aaactttgga gaaaagaaaa cctggactag tttagattat
5601 gaaatagaag ccataaatga agccctaaac aagttccaga tatacttaga
5651 caaagatttt acaatcagaa ctgattgtga agcaatagtg aaaggaataa
5701 aaacagaaga ctataagaag agatcaaaga ccagatggat caagttaaga
5751 gataatctct taaaagatgg ctacaagcct acctttgagc atatcaaggg
5801 taacaaaaat tttttaccaa acttcttatc ccgtgaggga gattttattt
5851 taaaatgtct tcaaaatccc gattctacgg aatcatattc tatagattcg
5901 tcagaatcaa ttccactata taacgattcg aaagaatcac attctataga
5951 gtctgatgac tcaattccac tatacaggga caagcttctt cctctagtcg
6001 aaaggctaaa ggagaaaagt gcctaactaa gatcggaggc atcaccatga
6051 atatagagta cccgtactca atccacataa tagacaagaa caaggttccg
6101 atctacgatc aaggaaatct cttccacact gagaagtctg cgagactttc
6151 acatgtgtcc agaggtttgc tggatcatct ctttactttt tcgtctgata
6201 atactgagcg agttaggaag ctccacatat tagccgatta tctttaccta
6251 ctagaaagtg agagagagtc atatagaaat gagtggatta gcctgagtga
6301 tcaggttagt ctcctacaaa aacaaaatag tgagttgaga gctaggatag
6351 ccactaataa agagataata gagggactga gagagccagt caaaaagcca
6401 atatacacaa cccaggataa agagaggctc cgtgtcttct tttgcgaaga
6451 aagaagcatg gaatatatat actatcatat aaaaaggcta gctcagcaga
6501 gctattattc ccacctaaat aagttacaga aggattgcga gccctttcga
6551 gggatctaca tgtctttctt aactaatgtt aaatttctag tattatgtga
6601 agccggatac tggactgtac cagatataga aactaatacc acagagtctt
6651 tattaagtct atctcagaag aaaggaaaag atcttctgca aaagggagtg
6701 gtaatattta atgagcttga aggaggatat caactttctc caaggttcat
6751 tggagacctt tatgctcatg gttttattaa acaaataaac ttcacgacca
6801 aggttcctga aggattgccg ccaatcatag cggaaaaact tcaagactat
6851 aagttccctg gatcaaacac agtcttaata gaacgagaga ttcctcgctg
6901 gaactttaat gaaatgaaaa gagagacaca gatgaggacc aatttatata
6951 tcttcaagaa ttatcgatgc ttctatggct attcaccatt aaggccatat
7001 gaacctataa ctcctgaaga atttgggttt gattactaca gttgggaaaa
7051 tatggttgat gaagacaaag gagaagtagt atacatctcc aaaaatacta
7101 agattattaa agtcactaga gagcatgcat gggcttggcc agaacatgat
7151 ggaggtacaa tgtcctgcac cacatcaata gaagacgaat ggatccaccg
7201 tatggacaat gcttaaagaa gctttatcaa aaacaacttt aagtacgaat
7251 caataaagaa ggaccagaag atataaagcg ggaacatctt cacatgctac
7301 cacatggcta gcatctttac tttagcatct ctattattgt aagagtgtgt
7351 aatgaccagt gtgcccctgg actccagtat ataaggagca ccagagtatt
7401 gtaatagatc atcgatcaag caagcgagag ctaaaacttc taagagagca
7451 agagaggagc ttatcctctc aacccctctt caagaagcaa aggcgatcaa
7501 tggctcaggt cagtgagtag tcgtctttaa ggttcctcta ggaacctctg
7551 tgtaatatgt ttgtacttat gattgtattt ctcaaaacct atccgctgca
7601 tgaataaagc tcttatattc atcctacacc cttgtgataa aacatgaagt
7651 catactcgtt ctaagattaa gtgttctaaa aatacttcga agcattgaaa
7701 agggggctaa agggggaaaa agtaccgtca ggccgtgtta tggcaaggga
7751 agaagtacca tgaataccct ataaatgtta gaaggaagat aagaactaag
7801 tatcttatga acaatgagta gctgatttct gattatcatt aacaagtatc
7851 gttataatcc ataagctttg aaagatctgc tagtgtggat accaaaaggc
7901 tgtcgtggtt cgcccagtcg acggatgagg ttataaacga agcactagta
7951 ggtaactaag aggcttaggg atgagcaacg agaaaagtta ggggggtgcc
8001 tagaaa