ID AY147260 standard; genomic RNA; VRL; 5470 BP.
XX
AC AY147260;
XX
SV AY147260.2
XX
DT 02-SEP-2003 (Rel. 77, Created)
DT 22-DEC-2005 (Rel. 86, Last updated, Version 3)
XX
DE Sclerotinia sclerotiorum debilitation-associated RNA virus, complete
DE genome.
XX
KW .
XX
OS Sclerotinia sclerotiorum debilitation-associated RNA virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus; unclassified Potexvirus.
XX
RN [1]
RP 1-5470
RX PUBMED; 16361437.
RA Xie J., Wei D., Jiang D., Fu Y., Li G., Ghabrial S., Peng Y.;
RT "Characterization of debilitation-associated mycovirus infecting the
RT plant-pathogenic fungus Sclerotinia sclerotiorum";
RL J. Gen. Virol. 87(PT 1):241-249(2006).
XX
RN [2]
RP 1-5470
RA Wei D., Jiang D., Li G., Yi X., Fu Y., Peng Y.;
RT ;
RL Submitted (03-SEP-2002) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Protection, Huazhong Agricultural University, Shizishan
RL No.1, Wuhan, Hubei 430070, P. R. China
XX
RN [3]
RC Sequence update by submitter
RP 1-5470
RA Xie J., Wei D., Fu Y., Jiang D.;
RT ;
RL Submitted (03-SEP-2005) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, College of Plant Science and Technology, Huazhong
RL Agricultural University, Shizishan 1, Wuhan, Hubei 430070, P. R. China
XX
CC On Sep 20, 2005 this sequence version replaced gi:34391570.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5470
FT /country="China"
FT /db_xref="taxon:213034"
FT /mol_type="genomic RNA"
FT /organism="Sclerotinia sclerotiorum debilitation-associated
FT RNA virus"
FT /specific_host="Sclerotinia sclerotiorum hypovirulent
FT strain Ep-1PN"
FT CDS 93. .5195
FT /codon_start=1
FT /db_xref="GOA:Q6YI57"
FT /db_xref="UniProtKB/TrEMBL:Q6YI57"
FT /note="RdRp; contains viral methyl transferase, helicase
FT and RNA-dependent RNA polymerase (RdRp) domains
FT characteristic of replicases"
FT /product="polyprotein"
FT /protein_id="AAN64332.2"
FT /translation="MKLRNPKAPIRNDRKAQRSFHKMLSLKAQAKLALTIQDRLELGLL
FT SNNFIRKKLQFVDGYCYLKFLRCAERKTAARNLGSDPSLGLMKRKLVPSQYHSWQSNYT
FT LLVTKSSKLTFAHVNRALGGQKLAEVPANCCIGSTICPFLSVPGDHSSYLVNQLPYMNG
FT YCYLKLIRRTCRFNAVVTLGPWPLATDFFDYIIHRNLNKDLGLFKCNLENTINGSFCHI
FT VEADPGSQNCIFPLPQDCRIGGSISEVVKTLGPDKEMIERDAVTEIKKEIAIVRKYNPY
FT HHSSKQQSALESYGIGSDPYAVRSHTHAAEKAIENKLLDIVGMNLRRRSVITMLWQKRN
FT KAHLMGRSNCKDVYVNTIMEAKDLVRYDQFSFGLPSVATSTAFIGDALHHMTPESVFDL
FT FERSPNLMVLHATIVIPPETLLKCRSSNPELYSLRYYDDKFVYIPEGHAGGSYVHEVKN
FT SNWLAISHIQRGGKFLTVKRLETLAAHHYFVIVKGKVETDSIRVFQSPSQVELLDIFAD
FT RQSNVRCSLDHAFAIKMERYVHSLKRLELADVTAKTRQLLSSEELLQYSPTDLVKIDNY
FT FYFLAHTSRFNSSEELIGSGFFESLVSPLKQWFSEICEKFLGKSNFHKTLEALEWKVIN
FT YDVKTVIYDMSKPWEKLHWKSENNLLSFDLDSNDNPTSLVDNTDCEASYSESTKFDYEL
FT VQVEDDFIDIRIPGIDIPIYDSEYLASEEPVEVEESPIPEVLPEIEDNLSDSMSIDGWM
FT SQSLKTFLPEHDDKVLSILEKFGVSKYGQVVGKNLILPITDFKSVQFEKIGQDEFTESL
FT QDRGFGFVSYTPDAERVAVAATDLEHGQGVLITSDEAGELFKKAMPMSVYTCVILGAGG
FT AGKTTFVEKFVKDNPKSFTVVTPLSVLKKEWQRKGAKNVFTYETALKRSLKKPANEYVI
FT LDDFTRFPAGWIELYMSLNTKSKYIVIGDSRQADSHSMSGAFANALVPAIDLFAPLSPF
FT YLNWTWRMTRPVANALGHVSWKLPESGKPILSVSSEVPKDCVVLAPSTTLKVGVETVND
FT KAFTYTSAQGATFDKVAILIDDNITRVCGDKAVYTALSRSKGEIVFVSTVTGPDTFEKV
FT KCTPFLRTFVELVREYELNQPKVREPEEDFVDDVTPVTSQPKVSEEFLIEELNKNSVEK
FT FDREIFRADLGHTDAVKEIGRVTEQIPRQQRSDEALNLVTLDKRVHHATVEENLDELAR
FT KKALGNILWTNFKEQYYSGLESVMVDQDLLVSCRAEITKTYLSKTEALLKGGQLRQSPD
FT FDKFKIADFLKTQWVRKTEKYGLPIKAGQTVTSFMQETVMATGTLSRYMRRMFDKLCTN
FT PNVYLHREKTEQDFSTWVKNGWNFSGHATINDCEAFDASQDGAFVEFERLHAEFLGVPR
FT ELIDFYVDTKIKSYIWRGTISVMRLSGEGPTYDFNTWANMAFMATKYSIPSVAMTAYSG
FT DDFACDQVLSVKPAFKELECRFKLKEKRFLKSQGRGSYADFCGMIITPNGVIKNPRKLY
FT LSLKSHDEIGTIDKAIVNYYNDLRTLISLGDNIFSALDATETEFFAGCLNVVHDYILRG
FT SNYEGHQNLTLFKKPRTIKWRVERDETRDCLIHMIIQDRKFIRNLLEGVEQTCDNKPNS
FT NLIFRGMTNGYQKRAKFNQLLNRQDEYLDKVLHKSAGQNALRRLTATLDDTQDSTVAEQ
FT SAV"
XX
SQ Sequence 5470 BP; 1688 A; 1053 C; 1170 G; 1559 T; 0 other;
ay147260 Length: 5470 22-DEC-2005 Type: N Check: 7403 ..
1 ctttagtaaa taccaccgcc tcttaataag tctcgaggca ctccccaacc
51 ttttttttca atttctaaag taattttaaa attgaaccga caatgaaact
101 gcgcaatcct aaagcgccca taaggaatga tcgtaaggct caacgatcat
151 tccacaagat gttgagcctc aaagcgcaag ccaagcttgc tctgacgatt
201 caagatcgcc tcgagcttgg tcttctttct aataatttta ttagaaagaa
251 gcttcaattt gtagatggct actgctatct aaaatttctc agatgcgctg
301 agaggaagac tgccgcgcgg aatcttggtt ccgacccatc tctcgggtta
351 atgaagagaa aattggtacc tagtcagtac cactcgtggc aaagcaatta
401 tacgttgctt gtcactaagt cctccaaatt gacgttcgct cacgtcaatc
451 gagcccttgg aggccaaaaa ttagctgagg taccagctaa ttgttgtatc
501 ggtagtacca tctgtccctt tctctcggtc cctggcgacc attcaagtta
551 tttggtaaat caattacctt acatgaatgg ttactgttac ttgaaattga
601 ttcgacgaac ttgtcgattc aatgcggttg ttactcttgg accctggccc
651 ctggcaacag acttctttga ctatattata cataggaact tgaacaaaga
701 tcttggtcta ttcaaatgta atttggagaa taccataaac ggttcctttt
751 gtcatattgt cgaagccgac cctggaagtc agaactgcat ctttccttta
801 ccccaggact gtcgaattgg gggttcaata agtgaagttg tgaaaacgtt
851 gggtcccgac aaagagatga ttgaacgtga cgctgtcacc gaaatcaaaa
901 aggaaattgc gattgtacgt aagtataatc cctaccacca ttcttcaaag
951 caacagagcg ctttggagtc ttatggcatt ggctctgatc cgtacgctgt
1001 gcgttctcat actcatgctg ctgagaaagc gatcgaaaac aaattgttag
1051 acatcgttgg tatgaacctg aggagacgta gcgtgattac aatgctgtgg
1101 caaaagagga ataaagctca cctcatgggt agaagtaatt gtaaagacgt
1151 ttacgtcaat actattatgg aagccaaaga tcttgtgcgc tatgatcaat
1201 tctctttcgg tctgccaagt gttgccactt caacggcatt tatcggcgat
1251 gcactacatc acatgacacc agaatcggtt tttgatctct tcgaaagatc
1301 gccaaaccta atggtacttc atgcgacaat agtgatacca ccggaaacgt
1351 tgttaaagtg taggtcatca aaccctgaac tttacagttt aaggtattac
1401 gatgataaat ttgtgtacat tcctgaagga cacgcgggag gttcttatgt
1451 acatgaagtt aaaaactcta attggcttgc tatctctcat atccagagag
1501 ggggcaaatt cctgactgtg aaaagattgg agactctcgc cgcccatcac
1551 tactttgtga tagtgaaggg aaaggttgag accgattcca ttcgagtctt
1601 tcagtcacca agccaagtag aattgctgga cattttcgct gaccggcaat
1651 ccaatgtaag atgctctctg gatcatgcct ttgctattaa aatggaaagg
1701 tatgtccatt ctttaaagag attggaatta gctgacgtca cggccaagac
1751 aagacaattg ctgagtagcg aagaacttct tcaatactca ccaactgact
1801 tggtcaagat cgacaactac ttttattttc tagcacacac ttccagattc
1851 aactcgtcgg aggagttaat tggaagtggg ttcttcgagt cgctcgtttc
1901 accacttaaa caatggttta gtgaaatatg tgagaaattc cttggaaagt
1951 caaattttca caagacactc gaagcgttag aatggaaggt cattaattac
2001 gatgtcaaga ctgtaattta tgatatgagc aaaccttggg aaaaacttca
2051 ttggaaatcg gaaaataatc tgctttcctt tgatcttgac agtaatgata
2101 atccaacttc actggtagac aatactgact gtgaagcttc ttattctgaa
2151 tcaaccaaat ttgattatga gttagtgcaa gtggaagatg actttataga
2201 cattcgaatt ccaggcattg acatcccaat atatgattca gaatatcttg
2251 cttcagagga gcctgtcgag gtagaagaat ctccaattcc tgaagtactt
2301 ccggaaattg aagataacct ttccgacagt atgtcaatcg atggttggat
2351 gagtcaaagt ctcaaaactt tcctgcctga gcatgatgac aaagtcctct
2401 ctatcttaga aaaatttggt gtctcaaaat atggtcaagt tgttggtaag
2451 aatctgatct taccaattac agactttaag agtgtccaat ttgaaaagat
2501 aggtcaagat gaattcactg aatctttaca ggatcgtgga tttggatttg
2551 tctcgtacac gccagacgcc gagagagtag ctgtcgcagc gacagactta
2601 gagcatggtc aaggagtgct aatcacttct gacgaagccg gtgagctttt
2651 caagaaagcc atgccaatgt ctgtctacac gtgcgttatt cttggtgctg
2701 gtggtgcggg gaaaacaaca tttgtcgaga aatttgttaa ggacaatccg
2751 aaatctttca ctgtcgtcac tcccctctct gtgctaaaga aggagtggca
2801 acggaaaggt gccaagaacg tctttactta tgaaacggct ctaaagcgta
2851 gtcttaagaa acccgctaat gagtacgtca tcctcgatga tttcacccgt
2901 tttcccgccg gatggattga gttgtacatg agcttaaaca ctaagtctaa
2951 gtatattgtg ataggagata gtcgacaagc ggatagtcat tcaatgagtg
3001 gagcttttgc taatgcatta gtcccagcca ttgatctatt cgccccgttg
3051 agcccatttt atttaaattg gacttggcgc atgactcgac ctgttgctaa
3101 tgctctaggc catgtgtcct ggaagttacc ggaatcagga aaaccaattc
3151 tcagtgtttc gtctgaggtg cctaaagact gtgtagtctt ggcaccgtcg
3201 acaacattga aagttggagt tgaaacagta aatgataaag catttacata
3251 cacgagtgct caaggtgcta cttttgataa agttgctatc ttgattgatg
3301 ataatatcac tcgtgtgtgt ggcgataaag cagtttacac tgccttaagt
3351 cgttcaaaag gcgaaattgt ttttgtttct actgtcactg ggccggatac
3401 tttcgaaaaa gtgaagtgta ctcctttttt gagaactttt gtggaactgg
3451 ttcgtgagta tgaactaaat cagcctaaag ttagagagcc tgaggaagac
3501 tttgttgatg acgtgacacc ggtcaccagt cagcctaaag tttccgaaga
3551 atttttaatt gaggaattga ataaaaattc tgtcgaaaag tttgacagag
3601 aaatattcag agctgatttg ggacacactg acgcagtcaa ggaaataggt
3651 agagttacag aacaaatacc ccgtcaacag aggagtgatg aggctctaaa
3701 tctagtcaca ctggataaga gagtccatca tgcaactgtt gaagagaatt
3751 tggacgaact cgctcggaaa aaggccttag gaaatattct ttggactaat
3801 tttaaagagc aatactattc cggactcgaa tcagtaatgg ttgaccaaga
3851 tctcttggtc tcatgccggg ccgaaattac taagacgtat cttagtaaga
3901 ctgaggcgct tcttaaggga ggacaattga gacaatcacc agactttgat
3951 aagtttaaga ttgcagattt ccttaagaca caatgggtga gaaagactga
4001 gaagtatgga ttaccgataa aggcaggtca gactgttacc tcatttatgc
4051 aggaaacagt catggcaact ggtactttaa gtagatatat gcgaaggatg
4101 tttgacaaat tatgtacaaa ccctaacgtg tatctgcatc gggaaaagac
4151 tgaacaggat ttctcaactt gggttaagaa tggttggaac ttcagtggtc
4201 acgcaactat taacgactgc gaagcttttg atgcttcaca agatggtgct
4251 tttgttgaat ttgagcgttt acatgctgaa ttccttggag taccacgaga
4301 gttaatagac ttttacgttg acacaaagat aaaatcatat atttggagag
4351 ggacaatttc agtcatgaga ctatcgggtg aaggccccac ttatgacttt
4401 aatacttggg ctaacatggc tttcatggct accaagtatt ccattcctag
4451 tgtagcaatg actgcttact ccggtgatga ttttgcttgt gaccaagtgc
4501 tgtcagttaa acctgctttt aaagagcttg aatgcagatt caaacttaag
4551 gaaaagaggt ttctgaaatc acagggtcgt ggttcctatg cagatttttg
4601 cgggatgata ataacgccaa atggtgtcat taaaaaccca aggaaattat
4651 atttgagtct aaagagtcat gatgaaattg gcactattga taaggcaata
4701 gtcaattatt ataatgacct tcgaacttta atttctttgg gtgacaatat
4751 cttctccgcg cttgacgcga ccgagactga gttttttgcc ggttgtctga
4801 acgttgttca tgattacata ctaaggggta gtaattatga aggccatcag
4851 aatttgactc tattcaagaa accacgaacc attaagtgga gagtggaacg
4901 agatgaaact agggactgtt taatccatat gattattcaa gaccgaaaat
4951 tcatccgcaa tctattggaa ggagtcgaac agacatgtga caataaaccc
5001 aattctaacc tcattttccg tggaatgaca aatggttatc aaaaacgagc
5051 caagtttaac caattgttaa accgccaaga tgagtattta gacaaggtct
5101 tgcacaaatc tgcaggtcaa aatgcccttc gtcgcttaac tgcaacatta
5151 gacgacaccc aagattcgac tgtcgctgaa caatcagcag tgtgattaag
5201 actagacgtt aatcaaaacc agcaattgag agtaagctgt ataaactcta
5251 gctagaagca ttgacaggta agctttataa acctatgtcc aatattgtcc
5301 aagattaaat atactttcat tacttggata ttctaaatta tgcaatcgtg
5351 agtcggaaag actatcgttt tcccaaccaa caatcgtagg attgaaggtt
5401 tactttcttt tataatggga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
5451 aaaaaaaaaa aaaaaaaaaa