ID   AY871068   standard; genomic RNA; VRL; 841 BP.
XX
AC   AY871068;
XX
SV   AY871068.1
XX
DT   01-JAN-2006 (Rel. 86, Created)
DT   07-JUN-2006 (Rel. 88, Last updated, Version 2)
XX
DE   Cucumber mosaic virus isolate SH17 capsid protein (CP) gene, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-841
RX   PUBMED; 16732480.
RA   Bashir N.S., Kalhor M.R., Zarghani S.N.;
RT   "Detection, differentiation and phylogenetic analysis of cucumber mosaic
RT   virus isolates from cucurbits in the northwest region of Iran";
RL   Virus Genes 32(3):277-288(2006).
XX
RN   [2]
RP   1-841
RA   Sokhandan Bashir N., Rasaei Kalhor M., Nourinejad Zargani S.;
RT   ;
RL   Submitted (23-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL   Plant Protection, University of Tabriz, 29 Bahman Blvd., Tabriz, E. Az.
RL   51664, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .841
FT                   /organism="Cucumber mosaic virus"
FT                   /specific_host="cucumber"
FT                   /isolate="SH17"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran:Shendabad"
FT                   /clone="1"
FT                   /virion
FT                   /note="causes leaf-yellowing subgroup: I"
FT                   /db_xref="taxon:12305"
FT   5'UTR           <1. .79
FT   gene            80. .736
FT                   /gene="CP"
FT   CDS             80. .736
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q2THX7"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="UniProtKB/TrEMBL:Q2THX7"
FT                   /protein_id="AAX70966.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRAGIGDMRKYAVLVYSKDDALETDELVLHVDTEHQRIPTSGVLPV"
FT   3'UTR           737. .>841
XX
SQ   Sequence 841 BP; 189 A; 211 C; 202 G; 239 T; 0 other;

ay871068 Length: 841  07-JUN-2006  Type: N  Check: 1507  ..
       1  attgcgttat tgtctactga ctatatagag agtgtgtgtg ctgtgttttc
      51  tcttttgtgt cgtagaattg agtcgagtca tggacaaatc tgaatcaacc
     101  agtgctggtc gtaaccgtcg acgtcgtccg cgtcgtggtt cccgctccgc
     151  cccctcctcc gcggatgcta actttagagt cttgtcgcag cagctttcgc
     201  gacttaataa gacgttagca gctggtcgtc caactattaa ccacccaacc
     251  tttgtaggga gtgaacgctg tagacctggg tacacgttca catctattac
     301  cctaaagcca ccaaaaatag accgtgggtc ttattacggt aaaaggttgt
     351  tactacctga ttcagtcaca gaatatgata agaagcttgt ttcgcgcatt
     401  caaattcgag ttaatccttt gccgaaattt gattctaccg tgtgggtgac
     451  agtccgtaaa gttcctgcct cctcggactt atccgttgcc gccatctctg
     501  ctatgttcgc ggacggagcc tcaccggtac tggtttatca gtatgccgca
     551  tctggagtcc aagccaacaa caaattgttg tatgatcttt cggcgatgcg
     601  cgctggtata ggtgacatga gaaagtacgc cgtcctcgtg tattcaaaag
     651  acgatgcgct cgagacggac gagctagtac ttcatgttga caccgagcac
     701  caacgcattc ccacgtctgg agtgctccca gtctgattct gtgttcccag
     751  aatcctccct ccgatctctg tggcgggagc tgagttggca gttctgctat
     801  aaactgtctg aagtcactaa acgttttacg gtgaacgggt t