!!NA_SEQUENCE 1.0
ID AY884005 standard; genomic RNA; VRL; 6820 BP.
XX
AC AY884005;
XX
SV AY884005.1
XX
DT 20-FEB-2005 (Rel. 82, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Citrus sudden death-associated virus, complete genome.
XX
KW .
XX
OS Citrus sudden death-associated virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymoviridae;
OC Marafivirus.
XX
RN [1]
RP 1-6820
RA Maccheroni W., Silva A.C.R.;
RT "Isolated nucleic acid molecules from the genome of Citrus Sudden Death
RT Virus and uses thereof";
RL Unpublished.
XX
RN [2]
RP 1-6820
RX DOI; 10.1128/JVI.79.5.3028-3037.2005.
RX PUBMED; 15709023.
RA Maccheroni W., Alegria M.C., Greggio C.C., Piazza J.P., Kamla R.F.,
RA Zacharias P.R., Bar-Joseph M., Kitajima E.W., Assumpcao L.C., Camarotte G.,
RA Cardozo J., Casagrande E.C., Ferrari F., Franco S.F., Giachetto P.F.,
RA Girasol A., Jordao H. Jr., Silva V.H., Souza L.C., Aguilar-Vildoso C.I.,
RA Zanca A.S., Arruda P., Kitajima J.P., Reinach F.C., Ferro J.A.,
RA da Silva A.C.;
RT "Identification and genomic characterization of a new virus (Tymoviridae
RT family) associated with citrus sudden death disease.";
RL J. Virol. 79(5):3028-3037(2005).
XX
RN [3]
RP 1-6820
RA Kitajima J.P., Piazza J.P.;
RT ;
RL Submitted (11-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL Alellyx SA, Rua James Clerk Maxwell, 320, Campinas, Sao Paulo 13067-850,
RL Brazil
XX
FH Key Location/Qualifiers
FH
FT source 1. .6820
FT /db_xref="taxon:312008"
FT /mol_type="genomic RNA"
FT /organism="Citrus sudden death-associated virus"
FT 5'UTR 1. .108
FT gene 109. .6675
FT /locus_tag="CSDaVgp1"
FT CDS 109. .6675
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5EGG5"
FT /note="putative 240 kDa polyprotein possessing sequence
FT motifs similar to methyltransferase, papain-like protease,
FT helicase and polymerase motifs present in nonstructural
FT proteins of other positive strand RNA viruses"
FT /locus_tag="CSDaVgp1"
FT /product="replicase-associated polyprotein"
FT /protein_id="AAW88343.1"
FT /translation="MDRISARIPVAPASAGPTEYTPYPHTHPLLPRGVFTSGPIQPCLH
FT FLPHHAQDAPIRCYRPLTFANHLRYDRSASSLKTPPVKLPLTGGTLADAILSLAPTTHR
FT DTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHPVHKTIET
FT NLLTNVWPHYATTPSGVMFMKPSKFEKLKIKQPNFSKLYNYRITAKDTTRYPSTSPDLP
FT TEDTCFMHDALMYYSPGQICDLFLSRPSLQKLYASLVVPPESDFTTISLFPDLYRYRIE
FT KDQLIYELEQNPAHNYIQPRSAIDWLKTTTIRCQDLTLTISRLDSWGPVHSLLIQRGKP
FT PIHLEEDSISFRAPKAVLLPEPASLSQSVRDRLVPADVYQALFIYVRAVRTLRVTDPAG
FT FVRTQISKPEYSWVTSSAWDNLAHFALATAPHRPHTTYFLFNSTAARVAHWFRTHTLAP
FT LSGATAAAASLLMTASWGFRAMISSHLVSLSICKRWLKAPPHLLWPEKAPWFQLTLRPK
FT VTGPLIDLPILRPFRLFPSTCAKLGAKHPALATLLPAAPRPTWPLKVGLALAAVPVCLF
FT LWRKFIGPDSPQDMHDSYHAMFHPQPWGLTLTRKAICCDRAPFLPIPVVPSSDFKAPPT
FT PATPLLTSIPIKGVEPQVSGEGVPPQSASSTGPASDSRRAPQPASSTGPDPPTQNTSAA
FT PQPPIESKVTFAQPIESVAPVVPGAGEPPQSASSTGPASVSRRDPQVASSTTPDAPTLD
FT VSVTPPKTIYPIDHLQNDFGPCRCSVCEPLQPAPVPSTPLTVSDHKEAQDAEALSSALQ
FT ALGLAPTPPAPQSQNLTVESSGAMHASSWDQLSSPSSDWDPSPLARDSSASGPPGMYSD
FT LFPAPYLPGTGQFIFRSRANGRANIPYPDMDCLLLSIEQATRLPKEALWDTLCATCPDS
FT LLDPDTIRRVGLSTDHFAILAHHYSLRCRFHTAHGVIELGMADATSSFDIDHTAGNPGH
FT FSLRQSATPRLNGGIAQDLAVAALRFNIDGTLLPIRSVHVYSTWPKRAKNLSSNMKNGF
FT DGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLIHIAGFPGCGKSFPISRLLRTPT
FT FRNFKVAVPTVELRAEWKTITGLPASEAWRIGTWESSLLKSARVLVIDEIYKMPRGYID
FT LAIHSDPTIEMVIALGDPLQGEYHSTHPSSTNSRLLSEPQHLSMYLDFYCLWSHRVPQN
FT VAAFFHVKTTSKQPGFCRYQRELPNSRILANSQNAGHTLQQCGYAAVTIASSQGSTYEN
FT AACIHLDRNSSLLSPAHSMVALTRSKVGVIFTGDPAQLSNAPSSNRMFSEFFSGRTRPL
FT HDWFHNEFPKATVLTEPLKTRGPRLTGAASPYSKAVPIRQASTPALKPDFQGDVIISAP
FT IVLGSGELNAPQVSSHFLPETRRPLHWDIPSAIPESATRPDSTEPTTSHPEPVYPGETF
FT ENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAVHQEKQDPTLLP
FT ASIQKRLRFRPSDKPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAECINLN
FT EFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFRSWKACQTLALMHD
FT AVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHLTTAVKLANDYTAFDQ
FT SQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDY
FT NLAVVNCEYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGY
FT YASHVGCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPF
FT QSACFDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRS
FT SRNSRSMPDDPDTTLLQGELLQHFQVPFMQSDTLLPLTGGSSAPILTPEAFSTSLAFSM
FT ASDAQAGPAPSRDDRVDRQPRLPAAPRVAEVGLNAPSVDYPFQWVVASYDGSEAKNLSD
FT DLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVSAVWTIASISPASASETSY
FT YGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPRFSYSVYSNGGTKGTNLC
FT TIILRGVVRLSGPSGNLLA"
FT mat_peptide 109. .4221
FT /locus_tag="CSDaVgp1"
FT /product="methyltransferase/protease/helicase"
FT mat_peptide 4222. .6027
FT /locus_tag="CSDaVgp1"
FT /product="RNA-dependent RNA polymerase"
FT mat_peptide 6028. .6672
FT /locus_tag="CSDaVgp1"
FT /product="capsid protein"
FT gene 6082. .6675
FT /locus_tag="CSDaVgp2"
FT CDS 6082. .6675
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5EGG4"
FT /note="putative start site; believed to be translated from
FT a subgenomic RNA"
FT /locus_tag="CSDaVgp2"
FT /product="21 kDa capsid protein"
FT /protein_id="AAW88344.1"
FT /translation="MASDAQAGPAPSRDDRVDRQPRLPAAPRVAEVGLNAPSVDYPFQW
FT VVASYDGSEAKNLSDDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVSAVW
FT TIASISPASASETSYYGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPRFS
FT YSVYSNGGTKGTNLCTIILRGVVRLSGPSGNLLA"
FT gene 6260. .6724
FT /locus_tag="CSDaVgp3"
FT CDS 6260. .6724
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q5EGG3"
FT /locus_tag="CSDaVgp3"
FT /product="hypothetical protein"
FT /protein_id="AAW88345.1"
FT /translation="MISLALPLSPKSWPTTDMLSSHLLSWRSALLLQPSPSPSLCRPSG
FT PLPPSLQLPPLKPPTMAVDSSLLAVLSSCPAPPISLLISPASILCSRAPSSTQTAPDSP
FT TPSTPMAEPRAPISAPSSSGELSASAAPPVIFSLRRASSGEGKHLLVSAR"
XX
SQ Sequence 6820 BP; 1353 A; 2552 C; 1353 G; 1562 T; 0 other;
AY884005 Length: 6820 April 26, 2005 08:33 Type: N Check: 1375 ..
1 gtcccctgtg atcgtctctc ccgccctcca gccggaaaga tatttttgct
51 ttaacttttc ttcgcactcc tacgccagat ctacgtgcct taggtcatct
101 aagccgctat ggatcgcatc tctgcccgca ttcccgtcgc gcccgcttcc
151 gccggcccga ccgagtacac tccataccca cacactcacc cactcctacc
201 ccgaggtgtc ttcacctccg ggcctattca accctgtctc cactttcttc
251 ctcaccatgc ccaagatgcc cccatccgct gctacagacc cctcaccttc
301 gccaaccatc tccgctatga ccgttccgcc tcatcgctca agactccgcc
351 cgtcaaactc ccactgaccg gtggtaccct tgccgatgcc atcctttcct
401 tggcacccac cactcaccgc gacaccatcg ccacccccct catggaagcc
451 cttgctgaac cttaccgcca atccttgagc acctacccat ggcacattcc
501 aaccaatctt cagcccttcc tcacctcttg cggaatcacc actgctggcc
551 aaggcttcaa ggcccaccct cacccagtgc acaagaccat cgagaccaat
601 ctcctcacta atgtctggcc ccactacgcc accactccta gtggcgtcat
651 gttcatgaaa ccatcaaagt ttgagaagct caaaatcaaa cagcccaact
701 tctccaagct ctacaactac cgcatcacag ccaaggacac cacccgttac
751 ccctccactt ccccagactt gcccaccgag gacacctgct tcatgcacga
801 tgccctcatg tactattccc ctggacagat ctgtgacctc ttcctctccc
851 gccccagcct ccaaaagctc tatgcttccc ttgttgttcc tccggagagc
901 gacttcacca ccatctccct cttcccagat ctctaccgct accggatcga
951 gaaagatcag ctcatctacg agctcgagca gaaccccgcc cacaactaca
1001 tccagcctcg ctctgccatc gactggctca agaccaccac catccgctgc
1051 caggacctca ctctcaccat ctcccgccta gattcctggg gcccagtcca
1101 ctctctcctg atccaaagag gcaagccccc tatccatctt gaggaggact
1151 ccatcagctt ccgtgcccca aaagcagtcc tcctgcctga gccagcttca
1201 ctctcccaat cagtccgcga ccgcctggtc cctgctgatg tttaccaggc
1251 tctcttcatc tatgtccggg ctgtccgcac cctccgtgtg accgacccgg
1301 ctggcttcgt tcgcactcag atctctaagc ccgagtactc ttgggtcact
1351 tcctccgcct gggacaatct ggcccacttt gccttggcca cagctccgca
1401 cagaccccac accacctact tcctgttcaa ctcaaccgct gctcgggtgg
1451 cccattggtt ccgcactcat accctggctc cgctctctgg cgccactgct
1501 gccgccgcga gccttctcat gaccgccagc tggggattcc gtgccatgat
1551 ctcctctcat cttgtctccc tctccatctg caagcgctgg ctcaaagctc
1601 ctcctcatct cctctggccc gagaaagctc cctggttcca gctcaccctg
1651 aggcccaaag tcactggccc tctgattgac ctgcccattc tccgaccctt
1701 taggctgttc ccttccacat gcgccaaact gggcgccaag caccctgctc
1751 ttgccacatt gcttcctgct gctcccaggc ccacatggcc cctaaaggtt
1801 ggcctcgcac tcgctgctgt cccagtctgc ctgttcttgt ggcggaaatt
1851 cattggtccc gattctccac aggacatgca tgacagctat catgccatgt
1901 ttcatccaca gccttggggc ctcactctca ctcgcaaggc tatctgctgc
1951 gatagggccc cctttctgcc catccctgtt gttcccagct ctgacttcaa
2001 ggccccgcca acacctgcca ccccactatt gacttccatc cctattaagg
2051 gtgtggagcc tcaagtttct ggagaaggag tacctccgca gtcggcttca
2101 tcaaccggcc cggcatcgga ctcccgtcgt gccccgcaac cagcttcatc
2151 aactggtccg gatccgccca cccagaacac gagtgctgcc ccccaacctc
2201 ccatcgaatc caaagttacc tttgcccaac ccattgagag tgtggcacct
2251 gtagttccag gagcaggaga acctccgcag tcggcttcat caaccggccc
2301 ggcatcggtc tcccgtcgtg acccgcaagt ggcttcatca accactccgg
2351 atgctcccac cctggacgtc agcgtgaccc ctccaaagac tatctatcct
2401 attgaccacc tccagaacga cttcggccct tgccgttgct ccgtctgtga
2451 accacttcag cctgcccccg tcccctccac tcctctcacc gtctcggatc
2501 ataaagaagc ccaggacgcc gaagctcttt cctcggccct ccaagccctc
2551 gggctcgctc ccaccccacc agctccacag tctcagaacc tcactgtaga
2601 gtcctcagga gccatgcatg cctcatcttg ggatcagctc tcctccccat
2651 catctgactg ggatccttcc cctctggccc gtgatagctc cgcctctggt
2701 cccccaggca tgtactcaga tctctttcca gctccctacc ttccaggcac
2751 cggtcagttc atcttccgct ccagggccaa tggtcgggcc aacatccctt
2801 atcccgacat ggattgcctc ttgctttcca tcgagcaagc cacccgcctt
2851 cccaaggagg ctctctggga caccctctgt gccacatgcc ccgactctct
2901 ccttgatcct gataccattc gccgagtcgg attgtccact gaccactttg
2951 ccatcctggc ccaccactac tccctcaggt gccgctttca caccgcccat
3001 ggtgtcattg agctcggcat ggctgatgcc acctcctcat tcgacatcga
3051 ccacactgct ggcaaccccg gccacttctc cctccggcaa tctgccactc
3101 cgaggctaaa tggaggaatt gctcaagatc tcgctgtggc cgctctcagg
3151 ttcaacattg atggcactct cctcccaatc cgctcagttc atgtctattc
3201 cacttggcca aagagagcaa agaacctgtc gtcgaacatg aagaacggct
3251 ttgacggcat catggccaac atccacccca ccaagaccaa tgaatcgaga
3301 gagaagatct tggcactcga ttcgcagctg gacatcgctg tcaggagatc
3351 cgtccgtctg atccatattg ccgggttccc agggtgcggc aagtcctttc
3401 ccatctcccg cctcctccgc actccaacct tcaggaactt taaggtggca
3451 gttcccactg ttgagctccg agccgagtgg aaaaccatta ctggtctccc
3501 ggcctcagaa gcctggcgca tcggcacctg ggaatcctct ctcctcaagt
3551 ctgcccgggt cctggtcatt gatgaaatct acaagatgcc aagaggctac
3601 attgatctcg ccatccactc tgatcccacc attgaaatgg tcattgctct
3651 cggtgatcca ctccaaggag agtaccactc cactcatcct tcctctacca
3701 actcccgcct tctctctgag ccccagcatc tctccatgta ccttgacttc
3751 tactgcttgt ggtcccaccg cgttccgcag aacgtggccg ccttcttcca
3801 tgtcaagacc acctccaaac agcctggctt ctgccgctac cagagagagc
3851 tgccgaactc cagaatcctg gccaactctc agaatgcagg ccataccctc
3901 cagcagtgtg gctacgctgc cgtcaccatt gcctccagtc agggctccac
3951 ctatgaaaat gcggcctgca ttcacctgga ccgaaacagc tccttgctct
4001 cccctgctca ctccatggtt gctctcactc gctcaaaggt tggtgtcatc
4051 ttcaccggcg atcccgccca gctctccaat gctccaagct ccaaccgaat
4101 gttctcagag ttcttctcag gccgcacccg ccctcttcat gactggttcc
4151 acaatgagtt cccaaaggcc actgtcctca ccgagcccct caagactcgg
4201 gggccccgcc tcaccggtgc tgcctcacca tactccaagg ctgtcccaat
4251 ccgccaagcc tccaccccag ctctcaagcc tgatttccaa ggggacgtca
4301 taatctcagc acccatagtt ctcggctccg gcgagctcaa tgcccctcaa
4351 gtctcctctc acttcctccc cgagactcgc cgtcctctcc actgggacat
4401 tccatctgcc atccctgaga gtgccaccag accggactcc actgagccca
4451 ccacctccca tccagagcca gtctaccccg gggaaacttt tgagaatctt
4501 gctgcccact ttctccctgc ccacgaccca accgatcgtg agatctactg
4551 gcagggtcag ctgtccaacc agttcccaca catggacaag gaattccatt
4601 tggctgcaca acccatgagt ctcctggctg ccgttcatca agagaagcaa
4651 gatcccactc tactgccagc ttcaatccaa aagagactcc gcttccgccc
4701 ctccgacaag ccctaccaga tcaccccaaa agatgaaatc ctgggccagc
4751 tcctctttga aggcctctgc cgagcctacc acagatctcc atttcacact
4801 gaggcctttg atcccgtgct tttcgccgag tgcatcaatc tcaatgagtt
4851 cgcccagctc tcgtccaaga cccaggctac tattatgggc aatgctcgcc
4901 gctcagaccc tgattggcgg tggagcgcag ttcgcatctt ctccaagacc
4951 caacacaagg tgaatgaagg gtccattttc cgctcctgga aggcctgcca
5001 aactttggct ctcatgcatg atgctgttgt tctaatcctg ggccctgtca
5051 agaagtacca gcgagtcttt gatcagagag accgaccccg acacctttac
5101 atccatgcag gcaacactcc atcacaaatg agcaactggt gtcaacagca
5151 tctcactact gccgtcaagt tggccaatga ctacactgcc ttcgaccagt
5201 ctcagcatgg tgaggcggtc gtccttgaaa gaaagaaaat ggaaagactc
5251 tccatccccc aggctctcat tgatcttcac atccatctca aaacccatgt
5301 ttccacccag tttggccccc tcacatgcat gcgcctgact ggcgagcctg
5351 gcacttatga tgataactct gactacaatc ttgcagttgt caactgtgag
5401 tacatggctg ccaacactcc cactatggtc tcaggcgacg actccctcct
5451 ggatcgtgag cctcccactc gccctgaatg ggtcatcctc cagcctcttc
5501 tcagtctccg cttcaagaaa gaaaggggtc ggtacgccac cttctgtggc
5551 tactacgcct cccatgtcgg ctgtgtccgc tcccccgtgg ctctctttgc
5601 caagctggcc atagctgtcg atgacggctc catctctgac aaaatggcct
5651 catacctctc tgaatttgct cttggccact cccttggaga ccatctctgg
5701 gaagctttgc ccctcgaggc cgttcccttc caatctgcct gctttgactt
5751 cttctgccgc cgggccccca gacacctcaa actctctctc atgctcggcg
5801 aggtcccaga atccatcatt gcccgcatcg ggtcatcctt gaagtgggcc
5851 tctcatgcca tctacaccac actctcctct gccgctcgag tggccattct
5901 gagatcctcc cgcaacagca gatccatgcc agatgacccc gacaccactc
5951 tgctacaagg tgaattgctt cagcactttc aagtaccatt catgcaatct
6001 gacactctcc tgcctctcac tggtggttcc tctgctccca tcctcacacc
6051 agaagccttc tccacctccc tcgccttctc catggccagc gatgcccaag
6101 caggtccggc ccccagtcgc gatgatcgcg ttgaccgcca gcctcgcctt
6151 cctgctgctc ctcgcgttgc tgaagttggt ctcaatgccc cgtcggtcga
6201 ctacccgttc cagtgggtcg tcgcctccta cgacggatca gaagccaaga
6251 acctaagtga tgatctctct ggctctgcca ctctcaccaa agtcatggcc
6301 aactaccgac atgctgagct cacatctgtt gagctggagg tctgccctct
6351 tgctgcagcc ttctccaagc ccatctctgt gtcggccgtc tggaccattg
6401 cctccatctc tccagcttcc gcctctgaaa cctcctacta tggcggtcga
6451 ctcttcactg ttggcggtcc tgtcctcatg tccagcacca cccatctccc
6501 tgctgatctc acccgcctca atcctgtgct caagggcccc gtcaagtaca
6551 cagactgccc cagattctcc tactccgtct actccaatgg cggaaccaag
6601 ggcaccaatc tctgcaccat catcctccgg ggagttgtcc gcctcagcgg
6651 cccctccggt aatcttctcg cttaggcgag cctcttcagg tgaaggaaaa
6701 cacctcctgg tctcagccag gtaatgatgc taaacctccc ccgctcaagc
6751 agcaatgcct agggttgccg gtcgatccaa agaccgtttt tctttattat
6801 ttaataaaaa aaaaaaaaaa