ID EU489641; SV 1; linear; genomic RNA; STD; VRL; 7674 BP.
XX
AC EU489641;
XX
DT 11-MAR-2008 (Rel. 95, Created)
DT 11-MAR-2008 (Rel. 95, Last updated, Version 1)
XX
DE Lolium latent virus isolate US1, complete genome.
XX
KW .
XX
OS Lolium latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC unassigned species in Flexiviridae.
XX
RN [1]
RP 1-7674
RA Vaira A.M.V., Maroon-Lango C.J., Hammond J.;
RT "Molecular characterization of Lolium latent virus, proposed type member of
RT a new genus in the family Flexiviridae";
RL Unpublished.
XX
RN [2]
RP 1-7674
RA Vaira A.M., Reinsel M., Maroon-Lango C.J., Hammond J.;
RT ;
RL Submitted (14-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL Floral and Nursery Plants Research Unit, National Arboretum, USDA-ARS,
RL 10300 Baltimore Avenue, Beltsville, MD 20705, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7674
FT /organism="Lolium latent virus"
FT /specific_host="Lolium perenne x L. multiflorum MF22"
FT /lab_host="Nicotiana benthamiana"
FT /isolate="US1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /virion
FT /db_xref="taxon:365150"
FT 5'UTR 1. .87
FT CDS 88. .5277
FT /codon_start=1
FT /product="replicase"
FT /note="RNA-dependent RNA polymerase"
FT /protein_id="ACA53374.1"
FT /translation="MTTLALNLAQYNDPITKGIIAQESLRRVRPDLKAVVNVNPYAIPT
FT SAALVLEKLGIGTHPMSLAVHPHAPCKAIENQILNTVGHLLPKEQPVTFMAMKKSKLNM
FT LRRHPSRADTFINPIYHPRDNVRYGLDPDPDQDASITASFLEVKTSTAFMQDTLHYLTP
FT EDLLDIFETSPKLENLIASFVLPVEATRNMKSLYPDLYSIHYTHGGFQWAPSGHLGDAY
FT FHEPWQLYWLRCGSLTRLIEEETTTTVQPPPGFEGEAYTRVRKEVRELKIYAERVTSIG
FT AHHLFIFSRNAKATPRVRSYSQNGKWVTLPRIFRPVSHNVQTPLKQEVANSLMLYTYAV
FT RPSLKDVAAKVRQKFDEKDLAEHSPLEITHLINYIYYIDQRAYLTNDDDILSDNLLKRW
FT IFTPIQAAYKKAKGFLLGPDDFQKLLKALEWQPVTFDYAVDHYKSNPWRIHASRTGAKM
FT RQLKNFLSRTTGLCEAVEDDALEGSELLKELEGNMWFRNPSEVEKEVFDAIVADLPPDS
FT QRSELILEDPNSNARDYLPIQQDQPSVTQGPDEAAQTQTPTATSMVTNSVAARMPPPVP
FT RTLREHHEQFPTTVRASFEQPSSTRAPETSENNTPAESVTPSPRAIYVGDFAIMDANAS
FT TSRASSPSPRRTVVSPRQPEAQNETLGRQIVSRVSPAHGCQMSPYAAQLAHQLSEQTAY
FT TDVIGQRMVAFYSQHSRSYKYGRHEHRSQSWLPVIDSLQVALGLDESYDHCLIQRYRKH
FT ARVGLHADDEECYEPDSTIVTLNLYGNADFLIERNTDKASETITLQHNDMLFMPSGMQV
FT THRHAVCSLYEGRVSITFRNKTKDYLRKSAPDMNPVEQPGASAGQLTGPLDHRPEELPW
FT EHWIPRLNRLGFTGLQKQTDPEGKLIYPITEIRQDMVYVPFPNCCPGPLRKDLEAMGRR
FT PVRYTVDTGRALTLASDIKNNRVGALLQNADLTWKTLLVEYCRMEPTSVPMTVIHGAGG
FT SGKSKLLQDHLNRAELNVVIIVPTRVLQQDWRNKMTEFPSFLVQTYEAAMMESAPQMVV
FT FDDYGKLPHGYIDLFCQFHPSVEYVILTGDARQSTYYEYNSDAGIRNLPTNIEVFKQYC
FT GYYINCTHRNKQDLANMLGVYSEKMGSTHFTFGNTCETGSLLLVPSGTQKTVMGEAGHK
FT TETYAGCQGITADKVQIMIDHDTHKSADSHMYTALSRATEHIHFYNSIAGLNTARFHAK
FT LNLTPYLKTFIQVITERAAAETEPAEYTVQAPTARTHIPVENCSTFLEKDLEEQRAKED
FT REVYTQAGATNVFQTNSPIVQCFQHQQPKDGALSIITHAKRLQYASAEANQAEYRAKLQ
FT IGAALWENFKTAMEIPDEPVPFIRDLWEQSEAEVLSTYLSKSEMAIKNGKNRQDPDWQD
FT ERMFVYLKAQWVTKASKFNLPTAKAGQTISAFKQAVVMKFGAMARYLRRITPKPDNIRI
FT NCEMQPQDISKWALGLDSHNRPTKQKWNFERPAFASDFEAFDQSQDGAMLHFEALWARH
FT FNVPSSLIEEYLFLKMHAQAPKGYLTIMRLTGEGPTFDANTACSIAYNHTRYEIPKSCM
FT QLYAGDDMLLDQVPVEKTGFKNIAAGLKLTAKTEIFEQKRGKWGEFCSWWMTPYGLVKD
FT PITLYHRILLASEIGDLSKKIDAYAIEAEPAYALQGRLFDCFNEEQMTAHYGTIRRLII
FT EGKTNFSLDDQAPRHQDLQGILNCMDAKFMYH"
FT variation 1664
FT /replace="g"
FT /note="results in Asp to Gly substitution"
FT variation 1969
FT /replace="a"
FT /note="results in Ala to Thr substitution"
FT variation 2002
FT /replace="a"
FT /note="results in Ala to Thr substitution"
FT variation 2799
FT /replace="c"
FT /note="results in Arg to Ser substitution"
FT CDS 5349. .6155
FT /codon_start=1
FT /product="triple gene block protein 1"
FT /note="TGB 1; involved in virus movement"
FT /protein_id="ACA53375.1"
FT /translation="MEDFFNCLRSRGFERTDEPLPSDSRRIVVHGVGGSGKTSLIEAFA
FT IANEWVRAYTLTSHERFDISGRGISQYKGQPIDEKLWTILDEYGQTDNPETLPPFNVLA
FT TDPYQAFRCQPLRAHFVSLRSYRVPHHIAQAITQYTGFPIEAAGTDLHEGKYTVGPWTD
FT KLRQQILVEDGEIHYQLSRRQCPHKLITDAIGEQWPTVTVVFDRSISPESARPLRCLFY
FT IAATRSSNELNIRTYVPTRTPGLIKASLPHTSCRLCCRPRDLPSEN"
FT CDS 6037. .6399
FT /codon_start=1
FT /product="triple gene block protein 2"
FT /note="TGB 2; involved in virus movement"
FT /protein_id="ACA53376.1"
FT /translation="MSSTSEPTYQLAPPDSLKQVYLTLAAGFAVGLGIFLLRTNTLPHT
FT GDNIHHLPHGGCYRDGTKSIRYNSPGVATSSNIFLPAVAVLCILALLHVPFFQPDRVRR
FT RCCRFYWCADPHHPTV"
FT variation 6166
FT /replace="t"
FT /note="results in His to Tyr substitution"
FT CDS 6314. .6532
FT /codon_start=1
FT /product="triple gene block protein 3"
FT /note="TGB 3; involved in virus movement"
FT /protein_id="ACA53377.1"
FT /translation="MSLSFSLIVFAVGVAVSIGVLTLTTQQSSSYCLILVDGAKAVVEG
FT CHLRQDIPAILSELKPASSPFNPLFCS"
FT CDS 6611. .7492
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACA53378.1"
FT /translation="MSESKAETPSKSAEKGVASLSTSAPPSSTTPTAQAKQTPPPVATT
FT ARPMASRLPRTIAAEGGGTEKKQSHLAEDRIAQYLPKQDAVDHSNLAALLQPFTEASYE
FT REFDVKVNGIASKAELTAVAETWASRLNVPKENSAVLAQEIAIHCYHNGSSEQTDFNLK
FT SSQVAGLNLEAAVGVIKEILTLRQFAAYYATFVWNWGIKNEIPPANWVAKGYTDETKYA
FT AFDTFSYVGSPLGLRITPTRKPTNNEYMAASVNAREKIIQSRGKGMVTNSPMFSDGTTH
FT QGIPLHPKLPLS"
FT CDS 7440. .7577
FT /codon_start=1
FT /product="putative nucleic acid-binding protein"
FT /note="expression of this coding region unverified"
FT /protein_id="ACA53379.1"
FT /translation="MAPPTREYRCTPNYHSARHQMSSLLGLCKGGVGPQPRPWCEKTMV
FT "
XX
SQ Sequence 7674 BP; 2137 A; 2231 C; 1770 G; 1536 T; 0 other;
eu489641 Length: 7674 11-MAR-2008 Type: N Check: 7713 ..
1 gaaaaccaaa ccaaaccaca ccagccaaaa cggaccaacc cagccacatc
51 tacggacttc gaacgcaaaa gctagtagat atcccagatg acgactctgg
101 ccctaaattt ggcacagtac aacgacccca tcacaaaagg tatcatcgca
151 caagagtctc tcagacgagt gcgacccgac cttaaagctg tggtcaatgt
201 caacccctac gccatcccga cttctgctgc actcgtactc gagaaattgg
251 gtattggaac tcacccaatg tcactcgcag tacaccccca cgcaccatgc
301 aaggccattg agaaccagat actgaacaca gtgggccatc tcctaccaaa
351 ggagcagcca gtcactttca tggccatgaa aaagagcaaa ctgaatatgc
401 ttcgacgcca tccgtcaagg gcggacacat ttatcaaccc catctaccat
451 cctagagata acgtccggta tggtctagat cctgaccctg atcaggatgc
501 atcaataaca gcaagttttc tcgaggtgaa gactagcaca gcatttatgc
551 aagatacact acactattta acacctgagg atctgctgga tatcttcgaa
601 acttccccga aactagagaa cctcattgca tctttcgtac tacccgtgga
651 ggccacacgc aacatgaaga gcctataccc cgacttatac agcatccatt
701 acacacatgg cggctttcaa tgggcaccct ctgggcacct cggtgacgca
751 tactttcatg aaccgtggca actctactgg ctgagatgcg gcagccttac
801 tcgactgatc gaggaagaga cgaccaccac tgtacaaccc ccccctggat
851 ttgaaggtga agcttacacc agggtcagga aggaagttcg agagctaaag
901 atctacgcag aacgagtcac ctcaattggg gcccaccacc tcttcatctt
951 tagccgaaac gccaaagcga cgcccagggt gaggtcctac tcacagaacg
1001 ggaaatgggt gacactgccg cgaatctttc gccccgtaag ccacaacgtt
1051 cagactccac tcaagcagga ggtggccaac tccctcatgc tatacacata
1101 tgcagttagg ccgtccctta aagacgtcgc tgctaaggtg cgccaaaaat
1151 ttgatgagaa agacctggca gagcacagtc ccttggagat cacacacctc
1201 atcaactaca tatactacat cgaccagagg gcatacctca ctaatgacga
1251 tgacatcttg tcggacaacc ttctgaagag gtggatcttc acacccatcc
1301 aggcagcata caagaaggcc aaaggcttcc tgctggggcc ggatgacttc
1351 caaaaattac tcaaagccct ggaatggcaa cctgtcacct tcgactatgc
1401 tgtggaccac tacaagtcaa acccgtggag gatccacgcc agcagaacag
1451 gcgctaagat gagacagctc aagaacttcc tcagtcgaac cactggactc
1501 tgtgaggcag ttgaggatga tgcactggaa ggaagtgaac tactgaagga
1551 actcgagggt aacatgtggt tccgcaaccc ctccgaggta gagaaggagg
1601 ttttcgatgc aatcgtagca gacctcccgc cagatagcca gagatcagag
1651 ctaatcctcg aggacccaaa cagcaatgcg agggactatc tacctattca
1701 acaggaccaa ccatcggtga cgcaagggcc tgatgaggca gcccaaactc
1751 aaaccccgac agccacaagc atggtcacaa atagtgtggc ggcccgaatg
1801 ccccctccag tcccaagaac cctaagggaa caccatgagc aattcccaac
1851 caccgttaga gcgtctttcg agcaaccaag cagcacgaga gccccagaaa
1901 cctccgaaaa caacacgccc gctgagtctg tgacgccatc accaagggcc
1951 atttatgttg gggactttgc tatcatggac gcaaatgcta gcaccagccg
2001 cgccagctca ccttccccca gacgcactgt cgtgagcccc cgacagcccg
2051 aggcccaaaa cgaaacgctg ggcagacaga tagttagccg ggttagccca
2101 gcccacgggt gccagatgag cccctacgcc gcccagttgg cacaccaact
2151 aagcgagcaa acggcctaca cggatgttat aggccaacgc atggttgcat
2201 tctatagcca acacagtagg agctataaat atggtcggca cgaacaccgc
2251 agccaaagtt ggcttccagt tatagatagc cttcaggtcg ctttggggct
2301 tgatgaaagt tacgatcact gcctcatcca acgctaccgc aaacatgcca
2351 gggtagggct gcatgcggat gatgaagaat gctatgagcc tgattcaacc
2401 attgtaaccc tcaacctcta cggtaacgca gatttcttaa tcgagaggaa
2451 cacagacaag gcatctgaaa ctatcacgct ccagcacaat gacatgctct
2501 tcatgccctc gggaatgcag gtcacacacc gccatgccgt ctgcagcttg
2551 tatgagggga gagtcagcat cactttccgc aataagacca aggactacct
2601 caggaaaagc gcaccagata tgaacccggt agagcaacca ggggcctctg
2651 caggacagct caccggaccg ttggaccaca gaccagagga actcccatgg
2701 gagcattgga tcccacgcct caaccggcta ggctttacag gcctacaaaa
2751 acaaacagac cctgaaggca agcttatcta ccccatcact gagataagac
2801 aggatatggt ctatgtccct ttcccgaatt gctgccctgg gccattgagg
2851 aaggaccttg aggccatggg ccgtcgacca gtcaggtata cagttgatac
2901 gggccgcgca ctcactctcg ccagcgatat caaaaataat cgtgtcggtg
2951 ctctgttgca aaatgctgat ctaacgtgga agaccttact ggtagagtac
3001 tgcaggatgg agcccacttc ggtacccatg actgtaatcc acggcgctgg
3051 tggctcaggc aaatccaaac tcctccaaga ccacctcaac agggctgagc
3101 taaacgtggt gatcatcgtg ccaaccaggg tactacagca ggactggaga
3151 aacaaaatga ctgagttccc gagcttcttg gttcaaacct acgaggcggc
3201 gatgatggag tcagcacccc agatggtcgt ctttgatgac tacggcaaac
3251 tacctcacgg atacatcgac cttttctgcc agttccaccc tagcgtggag
3301 tatgtcattc tcactggaga tgcccgtcaa tccacctact acgagtacaa
3351 ttcagacgct ggcatccgga acctcccaac aaatattgag gtgttcaagc
3401 agtattgtgg ctactacata aactgcacac acagaaacaa gcaagacctc
3451 gcaaacatgc ttggggttta ctctgaaaag atgggctcga cacacttcac
3501 ctttggcaac acatgcgaaa ctggcagcct actgctagta ccttcaggga
3551 ctcagaagac tgttatgggg gaggctggcc acaagactga gacttacgct
3601 gggtgccaag gcatcaccgc tgataaggtc cagattatga tcgaccatga
3651 cacccataaa agtgctgact cacacatgta cactgccctg tccagggcaa
3701 ctgagcatat ccacttctac aactccatcg ctggtctaaa tactgcaaga
3751 ttccatgcga agctaaatct cacaccatat cttaaaacct tcatccaagt
3801 catcactgag cgggccgcag ctgaaacaga acctgcagag tacacggtcc
3851 aggcacctac agcgaggact cacatccctg tggaaaattg cagtacattc
3901 ctagagaaag accttgaaga gcagagggcc aaggaagacc gggaagttta
3951 cacacaggca ggcgccacaa atgtattcca gaccaactca ccaatagtcc
4001 aatgtttcca acaccaacag cccaaggatg gagcgctaag tatcatcact
4051 catgcaaaac gcctccagta tgcctccgct gaagccaacc aggctgagta
4101 tagagccaaa ctgcagattg gcgccgcact ctgggagaac tttaagactg
4151 ccatggaaat cccagacgag ccagtaccat tcatccgtga cctatgggaa
4201 cagagcgagg ccgaggtcct aagcacctat ctatcaaagt ctgaaatggc
4251 cattaagaac gggaagaacc gccaagatcc agattggcag gatgagagga
4301 tgtttgtcta cctcaaggcg caatgggtta ctaaggcaag caagttcaac
4351 ctcccaacag cgaaagcagg ccagacaatt agtgcgttca aacaggcagt
4401 tgttatgaag tttggagcaa tggctcgcta cctacgacgc ataactccaa
4451 agcctgacaa cattcgtatc aactgcgaga tgcagcctca ggacatatcc
4501 aagtgggcgc taggcctcga ttcacacaat cgccccacga aacagaaatg
4551 gaactttgag agaccagcct ttgcatctga ttttgaggcc tttgaccaat
4601 cccaggacgg ggccatgctc cacttcgagg ccctatgggc gaggcatttc
4651 aacgtcccaa gctcactcat cgaagagtac ctattcctca aaatgcacgc
4701 ccaagcaccg aagggctacc tcacgatcat gcgtcttaca ggggaggggc
4751 cgacctttga tgcaaacaca gcatgctcca tagcctacaa ccacaccaga
4801 tacgagatac ccaagagctg catgcaactt tacgctggtg acgacatgct
4851 acttgatcaa gtcccagttg agaagactgg cttcaagaac attgcggcag
4901 gccttaagct cacggccaaa accgaaatct tcgaacagaa gaggggaaag
4951 tggggagagt tttgctcctg gtggatgacc ccctatggcc ttgtcaagga
5001 ccctatcaca ctgtaccacc ggattctcct tgcatcagaa attggtgatc
5051 tctcaaagaa aattgatgca tacgccatcg aggctgagcc tgcatatgca
5101 ctccaaggac gcctcttcga ttgctttaac gaggagcaga tgaccgcaca
5151 ctatgggacc atcagacgcc tcatcatcga aggcaagacc aacttctcct
5201 tagatgacca agcaccccgg caccaggacc tccagggcat cctcaactgc
5251 atggatgcaa agttcatgta ccattaacag cttttcctta actaacttct
5301 aactttggtc ttttggtttt tggttaggtt acccactagt cgattaacat
5351 ggaagacttc tttaattgtt tacggtcgag aggttttgag cgcactgatg
5401 aaccgctgcc cagtgatagc cgccgcatcg tggtccatgg agtgggcggg
5451 agtgggaaga catcattaat tgaagctttc gcgattgcca acgagtgggt
5501 acgcgcctac acgctcacta gccacgaacg gttcgacata tcgggccgtg
5551 gaatcagcca gtacaaggga caaccaatag atgagaagct ctggaccatc
5601 ttagacgagt acggccaaac agataacccc gaaaccctcc caccttttaa
5651 cgtactcgca accgaccctt accaggcttt ccgctgccaa ccgctaaggg
5701 cccatttcgt gagcttacga tcataccgag tgccacacca catagcgcag
5751 gccatcaccc aatacactgg cttccccatt gaggcagctg gtacagacct
5801 gcatgagggt aagtacaccg taggcccttg gacagacaaa ctaaggcagc
5851 aaatattggt cgaggacggt gaaatacact accagctttc ccggcgacag
5901 tgcccccaca agctcataac cgacgccatc ggggaacagt ggcccacagt
5951 caccgtcgtg tttgaccgaa gcattagccc tgagagtgcg cgaccactca
6001 ggtgcctgtt ctacatagct gcaacgagat cctccaatga gctcaacatc
6051 cgaacctacg taccaactcg cacccccgga ctcattaaag caagtctacc
6101 tcacactagc tgccggcttt gctgtcggcc tagggatctt ccttctgaga
6151 actaacactc taccccatac cggcgacaac atccaccatc tcccacacgg
6201 tggctgttac cgcgacggta ccaaatccat taggtataac tcaccaggag
6251 tggcaacctc cagtaacatc ttcctacccg cagtagctgt cctctgtatc
6301 ttagcacttc ttcatgtccc tttctttcag cctgatcgtg ttcgccgtag
6351 gtgttgccgt ttctattggt gtgctgaccc tcaccaccca acagtctagc
6401 agctactgct tgattcttgt tgacggggca aaagccgtcg ttgagggctg
6451 ccaccttaga caggacatcc ccgccatcct aagtgagctc aagcccgcct
6501 cctcaccttt caaccctctt ttctgtagtt aggtttcctt tagtttcaat
6551 aattccattc ttcgcttctc tttccaagtt tgctgttcga gtccttagtt
6601 cctagcttat atgtcagaat ccaaagcaga gacgcctagc aaatcagctg
6651 agaagggtgt agcaagtctg agcaccagtg caccccctag cagcaccaca
6701 ccaacagccc aagccaaaca aacaccaccg cctgtggcaa ccactgctag
6751 acccatggca tcacgcctgc ccaggaccat tgcggctgag ggtggtggaa
6801 ctgaaaagaa gcaatcccat cttgcggagg accgcatcgc ccaatacctc
6851 ccaaaacagg atgcggtcga ccacagcaat ctcgctgcac tcctccaacc
6901 tttcacagag gcaagctatg aacgcgagtt cgatgttaag gtcaacggca
6951 ttgccagcaa ggccgaactc acggcggtgg ccgagacatg ggcttcaaga
7001 ctcaacgtgc cgaaagaaaa ctcagccgtc ctcgctcagg agatagccat
7051 acactgctac cacaatggct catctgaaca gaccgacttc aacctcaaga
7101 gcagccaggt cgcaggactg aatcttgaag ctgctgtggg cgtaattaaa
7151 gagatcctta cactaagaca gtttgcagcg tactatgcga cctttgtctg
7201 gaactggggc attaagaatg aaataccacc agccaactgg gtggccaagg
7251 gatacactga tgagacgaaa tacgccgcct ttgacacctt cagctatgta
7301 ggttcacccc ttgggctcag gatcacacca acaaggaaac caaccaacaa
7351 cgagtatatg gctgccagcg tgaacgccag ggagaaaatt atccaatcca
7401 gggggaaggg catggtcacc aacagcccca tgtttagcga tggcaccacc
7451 caccagggaa taccgctgca ccccaaatta ccactcagct aggcaccaaa
7501 tgtcttccct ccttggactc tgcaaaggag gtgtgggccc acagccccgc
7551 ccatggtgtg agaaaaccat ggtttagttg tggcaccact ggatgtatcc
7601 agtacgcctg ttttagcgac ctaaatgcta ataaggaccg aggggaggta
7651 caccctcggt tttgccgtca aagc