ID FJ915122; SV 1; linear; mRNA; STD; VRL; 6463 BP.
XX
AC FJ915122;
XX
DT 10-SEP-2009 (Rel. 102, Created)
DT 07-SEP-2010 (Rel. 106, Last updated, Version 3)
XX
DE Blackberry virus S polyprotein mRNA, complete cds.
XX
KW .
XX
OS Blackberry virus S
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Tymoviridae; Marafivirus.
XX
RN [1]
RP 1-6463
RX DOI; 10.1007/s00705-009-0510-x.
RX PUBMED; 19784756.
RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N.;
RT "Identification and molecular characterization of a marafivirus in Rubus
RT spp";
RL Arch. Virol. 154(11):1729-1735(2009).
XX
RN [2]
RP 1-6463
RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N.;
RT ;
RL Submitted (13-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Entomology & Plant Pathology, Mississippi State University, 100 Twelve
RL Lane, Mississippi State, MS 39762, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6463
FT /organism="Blackberry virus S"
FT /host="Rubus canadensis"
FT /isolate="GSM-8"
FT /mol_type="mRNA"
FT /country="USA"
FT /db_xref="taxon:670883"
FT CDS 195. .6302
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains motifs of methyltransferase, endopeptidase,
FT helicase, RdRP and 23K and 21K coat proteins"
FT /db_xref="GOA:C8YZ25"
FT /db_xref="InterPro:IPR000574"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR002588"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR008043"
FT /db_xref="UniProtKB/TrEMBL:C8YZ25"
FT /protein_id="ACV53023.1"
FT /translation="MERSNSNLFASTSACFSLAIPISPLDFSPNAEAESLLPLQGAGFK
FT DVIEALAPTSHRDTISSALLETVVDPFRSSLQRYPWSVPTHHQTFLQNCGIDASGFGFK
FT SHPHPVHKILETNLIHNTWSCLASTDSAVMFMKPSKFAKLQAAQPHFTELHNYRLVAKD
FT STRYPVTSSHVPNIETIFMHDTIMYYTPAQVLDLFLQSPKLQKLYASLVVPPESDFTSI
FT TLYPELYRFRFDGHSLVYELEQNPAHNYTQPKSALVWLKTTTIIGPDFSLTVSILDSQG
FT PLHSLLIQRGEPPLHSRHDTAEFRTPPAILLPAPSSLNQDVRHRLVPKKVYDAVFLYVR
FT TVRTLRVTDPAGFIRTQSSKAEHSWVTSFAWDNLAHFALQTASHRPRTTYYLFSSALAR
FT LSHWCRNHQLALSWASVVAISPAAALSSLSVSKFLRSELNSLAIFRRWIKAPPHFLFAP
FT KAPFLSMSFRALRTGPLLFANTGFQTRLFPTAAQNFCSANPLLASFFPVKPLHRGAFLA
FT SLLAASVPVALLLVRQFVGPDSPQSMHDAYADLFHPADWRLIFNRKPLFASPEPFLPIT
FT TVPAPVDLPQIESIAIPAPSPAPPSPTSLAPTPIPPVTSTLDPAPASASAPAATPPAIA
FT APAPAPEPQAEALSLLIPSEHQPAAPPPIPELLPAAGQLQLESSGVVSNLTPAAPEPAA
FT PEPSPLQADSSARGPVQLFSELFPGSYIGTTGAFNSRYRASGRAPTPYPAGTDCLLVTI
FT EQATSISRRDLWETLVTNLPDCLLAPCEISKHGLSTDHFAVLAFFYSLRVTFLTSHGPV
FT DLGMSDATTNFRIDHQPESKDLMGHFSLHQDSKPVPTLNGGTGSELATAATRFNLDGCL
FT LPFNTVHTFVTAPSRAKNLISNMKNGFDGVLANIDPHHTSTARDRLLCLDGIIDVAKPR
FT RVRLFHIAGFAGCGKSYPIARLLKTPLFREFKVAVPTVELRAEWKDLLKIRPGAQWRLS
FT TWESSLLKSARILVIDEVYKMPRGYVDLAVHADPTIELVILLGDPLQGVYHSTHPSSTN
FT SRLSPETHYLSKYIDFYCLWSHRIPQDVAKFFGVHSTNLAPGFSKWVPNLSPSSKILTN
FT SQNSMKTLVDCGFASVTIASSQGSTYPGATNILLDRNSALLSHSNSLVALTRSKKGVVF
FT TGDRKMLEEGPTSNLLFSRYFTGKVVSLAGLFPSELPKCPHLTVPLTSRSVKLSGAGLY
FT DHAIPFRSASAPMIKSSVTSDVILDPVRPFLGDGDLNAPQISTHFLPETRRPLHFDIPS
FT GKPSSDSPASAEPTVPVHEPVYPGETFENLAAHFLPCHDPEDREIHFRGQLSNQFPHIN
FT RPFELACQSSSLLAAVHSERDDPTLLPASIPKRLRFRPSSAPYRLTAKDEVLGSLLYEG
FT LCRAYHRNSFTVLPFNETLYLECIALNEFAQLSSKTQSVIMANSKRSDPDWRYSAVRIF
FT SKAQHKVNENSIFGNWKACQTLALMHDAVVLLLGPVKKYQRMFDAQDRPAHLYVHAGNT
FT PAQMSSWCQNHLTDTVHLANDYTAFVQSQHGEAVVLERKKMERLSIPQALIDLHVFLKT
FT NVETQFGPLTCMRLTGEPGTYDDNSDYNLAVINLEYSASHVPTMISGDDSLLDFEPPRR
FT PEWSALEPLLALRFKKERDRYATFCGYYVGKAGAVRSPIALFAKLMIAVDDGSLGDKLI
FT SYLAEFAVGHSLGDPFWTLLPLEAVLFQSACFDFFCRRAPPALKISLKLGEVSESIMAR
FT LGRGLNWASSAVYSMLSSAQRRALLTSSRQGRSLPDNPEVSKLQGELLQSFQFVPQPSM
FT NNSLLLPLFGGLSPSLAAHPMPGPNVTSQVGPAPPNDDRVDRQPSLPLAPRVAEVSPLH
FT AHIDYPFQWEVGTYSGDKAAFVSDDLSASKTLKTLTAGYRHAEILSAEVDFVPLAPSFS
FT KPISVGAVWTIASISPASAHEQSYYGGRLLTLGGPVLMSSTTRIPLDVSRINPVIKSSV
FT SYSDTPRISYTVYSAAGTANTALISVIIRGIVRLSGPSGNTVA"
XX
SQ Sequence 6463 BP; 1156 A; 2466 C; 1286 G; 1555 T; 0 other;
fj915122 Length: 6463 07-SEP-2010 Type: N Check: 8426 ..
1 gacacagccc gtttgttctc ttccttactg cacacttgtc cggtaagttt
51 tttgtgcacc tttgtatcct gcctgaactt tcgcgcccgc acagcccgtt
101 tgttctcttc cttactgcac acttgtccgg taagtttttt gtgcaccttt
151 aactcctctc tcgcaaagtg ccgctaggtc actttacgcc taccatggaa
201 cgctccaact ccaacttatt cgcctccacc tcggcttgct tctcgcttgc
251 catccctatc tcccccctcg acttttcgcc caacgccgaa gccgagtctt
301 tactcccgct ccaaggagcc ggtttcaaag acgtcattga ggctctcgcg
351 cccacctccc atcgtgacac tatttcctcc gccctcctcg aaacagtcgt
401 tgacccattt cgctcctcac tccagcgtta tccatggtct gtccccactc
451 accatcaaac attcctccag aactgcggca ttgatgcctc cggttttggc
501 ttcaaatccc acccccaccc tgttcacaag attctggaga ccaacctcat
551 ccacaacacc tggtcttgcc tcgcctccac cgactccgcc gtcatgttca
601 tgaaaccatc caaattcgcc aagctccagg cagcccaacc ccacttcacc
651 gagcttcaca actaccgtct cgttgccaag gactccaccc gctaccccgt
701 aacctcttcc catgtgccaa acatcgagac catatttatg cacgacacca
751 tcatgtacta caccccggct caggtcctag acctcttcct ccagagcccc
801 aagcttcaaa agctgtacgc ctccctcgtc gtgcccccgg agtcagattt
851 cacctccatc accctgtacc cggagttgta tcgcttccgg ttcgatggcc
901 acagtcttgt ttatgagctg gagcaaaatc ccgcccacaa ctacacccag
951 ccaaagtcag ctcttgtctg gctcaagacc accaccatca ttggacccga
1001 tttctccctc accgtctcca tcttggactc tcaaggtcct ctccactctc
1051 ttctgattca acgtggagaa cctccgctcc attcccgcca cgataccgcc
1101 gaattccgca ctccccccgc catccttctc cccgctccgt cgtcgcttaa
1151 ccaggatgtc cgacacaggc tcgtgcctaa gaaagtctac gacgccgtct
1201 tcctctacgt gcgcaccgtc cgcaccctcc gcgtcacaga ccctgctgga
1251 ttcatcagaa cccagagctc caaagctgaa cattcatggg tcacctcctt
1301 cgcctgggac aacctagccc atttcgccct tcaaaccgcc tcacatcgcc
1351 ctcgcaccac ctactaccta ttcagctcag ctcttgcccg cctctcccac
1401 tggtgtcgca accaccaact cgccttgagc tgggcctctg tcgttgccat
1451 ctcacctgca gccgctcttt cctccctgtc cgtttccaag ttcctgcgca
1501 gcgagctgaa ttccctcgca atcttccgcc gatggattaa agcccccccg
1551 cacttcttgt tcgccccgaa agccccgttt ctctccatga gcttccgggc
1601 tcttcgcact ggccctctgc tcttcgccaa caccggcttt cagactaggc
1651 tcttccccac cgcagcccag aacttttgct ccgccaaccc tcttctcgcc
1701 agctttttcc ctgtcaagcc tctccatcgc ggtgctttcc tagcttccct
1751 cctcgccgcc agcgtgcccg tcgctctcct ccttgtccgg cagttcgtgg
1801 gtcccgactc accacaaagc atgcacgacg cctatgccga tcttttccac
1851 ccagctgact ggcgtctgat ctttaaccgc aagccgctgt tcgcctcccc
1901 ggagcctttc cttcccatca caaccgttcc agcccctgtc gatctgcccc
1951 agatcgaatc catcgccatc ccagccccgt ccccagctcc gcccagccca
2001 acctcccttg ccccaactcc catcccgccg gtcacttcca ccctcgatcc
2051 cgctccggct tcagcttccg ctccggctgc cactcctccc gccatcgcag
2101 ctccagcccc cgctccagag ccccaagccg aggctttgag cctcctcatc
2151 ccctccgagc atcagcctgc cgccccgcct ccaatccctg aactgcttcc
2201 cgccgccggt cagctccagc ttgagtcctc gggtgttgtc tccaacctca
2251 ccccagccgc gccagaacct gccgcaccag agccctcccc tcttcaagct
2301 gattccagtg cgcgtggtcc cgtgcagctc ttctcagagc ttttccccgg
2351 ctcctacatt ggcaccaccg gagccttcaa ctctcgctac cgcgcctccg
2401 gtcgagcccc cactccatat cctgccggca ctgactgcct gttggtgaca
2451 atcgagcaag ctaccagcat ctccagacgc gatctgtggg aaaccctcgt
2501 caccaatctt cctgactgtc ttcttgctcc gtgcgaaatt tccaagcatg
2551 gactctccac cgaccatttc gccgttctcg ccttcttcta ctccctgcga
2601 gtcaccttcc tgacctcaca tggccctgtc gacctcggga tgtccgatgc
2651 caccaccaac tttcgcattg accaccagcc ggaatccaaa gacctcatgg
2701 gtcacttctc cctgcaccaa gattctaagc cggtccccac cctcaatggc
2751 gggactggct ccgagctggc cactgccgcc acacgcttca acttggatgg
2801 ttgcctgctc cctttcaaca ccgttcatac cttcgtcact gccccttcac
2851 gcgccaaaaa cctcatcagc aacatgaaga atggtttcga cggggttctc
2901 gccaacatcg acccacatca cacctccact gcccgtgatc gcctgctttg
2951 cctcgatggc atcattgacg ttgccaagcc ccgccgtgtt cgactgtttc
3001 acatcgcagg ctttgcaggc tgcggcaagt cctacccaat cgctcgcctc
3051 ctcaagaccc cacttttccg tgaatttaag gtggctgtgc cgacggtcga
3101 gcttcgcgcc gagtggaagg acctgctgaa gatccgacct ggcgctcaat
3151 ggcgtctctc cacctgggag tcttctctgc tcaaatcggc ccgcattctg
3201 gtcatagatg aggtctacaa gatgccaagg gggtatgtcg acctcgctgt
3251 ccacgcagat ccaacaatcg agctcgtcat tttgctcgga gacccactgc
3301 aaggcgtgta ccactccacc catccctctt caaccaattc ccgtctgtcc
3351 cctgagaccc actatctctc caagtacata gacttctact gtctgtggtc
3401 ccaccgcatt ccgcaagacg tggccaagtt tttcggcgtc cactccacca
3451 acctagcccc aggcttcagc aagtgggtcc caaacctgtc cccaagctca
3501 aagatcctca caaactccca aaactctatg aaaactctgg tggattgcgg
3551 cttcgcttct gtgacaatcg cttcaagtca ggggtccacc taccctgggg
3601 ccactaacat tcttcttgac cgcaactccg ctctgctgag ccattctaat
3651 tcgcttgttg ctctcacccg ctccaagaaa ggggtcgtct tcactgggga
3701 tcggaaaatg cttgaagagg gccccacttc caatctcctc ttctcccgct
3751 acttcactgg caaggtcgtc tctctcgccg gcctctttcc ttctgagctt
3801 cctaagtgcc cccacctcac cgtccctctg acctccagat ccgtcaaact
3851 ctctggtgca ggcctctatg accacgccat tccttttcgc tcggcctctg
3901 cacccatgat caaaagttcc gtcacatccg acgtcattct ggaccctgtc
3951 cggccctttc tcggagacgg ggacctcaac gccccgcaaa tatcgaccca
4001 ctttctgccc gagacccgca ggcccttgca ttttgacatt ccttcgggca
4051 agccttcctc cgactccccc gcttcagccg agccaactgt tcccgtccat
4101 gagccggtgt accctgggga gacctttgaa aatctcgccg cccattttct
4151 tccgtgccat gaccccgagg atcgtgaaat ccatttccgt gggcagctct
4201 ccaatcagtt tcctcacatc aaccggccct tcgagctcgc ctgccagtcc
4251 tcctctctcc tcgccgccgt tcactctgag cgtgatgacc ccactcttct
4301 cccggcgtcc atcccgaagc gtctccggtt ccgcccttcc tctgcgcctt
4351 acagactcac tgccaaggat gaggtcctgg gttcgctcct ttatgaaggt
4401 ctgtgtcgcg cttaccatcg caactcattc accgtcctgc ccttcaatga
4451 gaccctgtac ctcgaatgca tcgccctcaa tgagttcgcc cagcttagct
4501 cgaagaccca gtctgtcatt atggctaact ccaaaagatc ggaccctgat
4551 tggcgttact cggccgttcg catcttcagc aaggctcaac acaaagtgaa
4601 cgagaactcc atctttggaa actggaaggc ctgccagacc ctagctctga
4651 tgcacgacgc cgtcgtcctc cttctgggcc cagtcaagaa gtaccagcgg
4701 atgtttgatg cccaagatcg acctgctcac ctgtacgtgc acgctggcaa
4751 cactccagct cagatgtcct cctggtgcca gaaccacctc actgacacgg
4801 tccacctcgc caatgactac accgcttttg ttcaatctca acacggcgag
4851 gccgtcgttc tcgagcgcaa gaaaatggag cgtctctcga tccctcaagc
4901 gctcatcgat ctccacgtct tcctcaaaac caatgtcgag actcagttcg
4951 ggccgctcac ttgcatgcgc ttgactggcg agccaggcac ttacgacgac
5001 aactccgact acaacctggc cgtcatcaat ctggagtatt ccgcctctca
5051 cgtcccaacc atgatctcgg gcgatgactc cctgcttgac tttgagccgc
5101 ctcgccggcc tgagtggtcc gccctcgagc ctcttctcgc cctgcgcttc
5151 aagaaagagc gcgatcgcta tgccactttc tgcggctatt acgtcggcaa
5201 ggctggcgcc gtccgctctc ccatcgctct attcgccaaa ctcatgattg
5251 ccgtcgatga tggctcactg ggcgacaaac tgatttctta cttagccgag
5301 tttgcagtcg gtcactccct tggggaccct ttctggaccc ttctcccgct
5351 cgaggctgtg ctctttcaat ccgcttgctt cgacttcttt tgccgccgtg
5401 cgcctcctgc tctcaaaatc tccctcaagc ttggagaagt ctctgagtcg
5451 atcatggctc gtctcggccg cggtctcaac tgggcatcat ccgccgtcta
5501 ctcaatgctt tcctccgctc agcgccgcgc tctcctcact tcttcccgcc
5551 agggccgttc acttcctgac aatcccgaag tctcgaagtt acagggtgaa
5601 ttgcttcagt cttttcaatt tgtgcctcaa ccttctatga acaattctct
5651 cctgcttcct ctcttcggtg gtctctctcc ctctctcgct gctcacccca
5701 tgccaggccc caatgtcacc tcccaggtcg gtcccgctcc tcccaatgat
5751 gatcgcgtgg atcgccagcc tagtcttcct ctggctcctc gtgtcgcgga
5801 ggtctccccg ctccacgcgc atatcgacta cccattccaa tgggaagtcg
5851 ggacctactc cggagacaaa gccgcgtttg tgagcgatga tctctcagcc
5901 agcaaaaccc tcaagacgct caccgccggc taccgccatg ctgaaatcct
5951 ctccgctgag gttgacttcg tcccgctcgc cccctcgttc tccaagccca
6001 tctctgtcgg cgccgtctgg accatcgcct ccatctcccc cgcctccgct
6051 cacgagcagt cctattacgg cggtcgactc ctcacgctcg gcggtcccgt
6101 gctcatgtcc tccaccaccc gcattcctct tgacgtgagc cgcatcaacc
6151 ccgtcatcaa atcttcggtc tcctattcgg acacgccgag gatctcctac
6201 accgtctact ccgccgccgg aactgccaac accgccctca tctccgtcat
6251 catccgcgga attgtccgcc tgtccggccc ttccggcaac accgtcgcct
6301 gatctcatca ggatgcgaga aggacactcg cccgagcctc agagccggta
6351 tgtcgttaaa cccaagcttt cctttctttt ccttttcctt tccctccaga
6401 gcttcccgtt aatctagcaa tagtcagggt tccaggtccc tcagacctcg
6451 gcctcttttc ctt