ID FM995220; SV 1; linear; genomic RNA; STD; VRL; 3334 BP.
XX
AC FM995220;
XX
DT 05-FEB-2010 (Rel. 103, Created)
DT 05-FEB-2010 (Rel. 103, Last updated, Version 1)
XX
DE Rotifer birnavirus strain Palavas segment A, genomic RNA
XX
KW .
XX
OS Rotifer birnavirus strain Palavas
OC Viruses; dsRNA viruses; Birnaviridae.
XX
RN [1]
RP 1-3334
RA Delmas B.;
RT ;
RL Submitted (04-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL Delmas B., Unite de Virologie et Immunologie moleculaires, INRA, Domaine de
RL Vilvert, INRA, F-78350, FRANCE.
XX
RN [2]
RA Boudinot P., Gibrat J.F., Delmas B.;
RT "Genome characterization of a Rotifer birnavirus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3334
FT /organism="Rotifer birnavirus strain Palavas"
FT /segment="A"
FT /host="Brachionus plicatilis"
FT /strain="Palavas"
FT /mol_type="genomic RNA"
FT /country="France:Languedoc-Roussillon"
FT /lat_lon="43.31 N 3.55 E"
FT /isolation_source="dying population of Brachionus
FT plicatilis in culture tanks"
FT /collected_by="Michel Comps"
FT /collection_date="1990"
FT /identified_by="Michel Comps"
FT /db_xref="taxon:595652"
FT CDS 52. .3234
FT /transl_table=1
FT /product="polyprotein"
FT /db_xref="GOA:D3GMG2"
FT /db_xref="InterPro:IPR002662"
FT /db_xref="InterPro:IPR002663"
FT /db_xref="InterPro:IPR002664"
FT /db_xref="UniProtKB/TrEMBL:D3GMG2"
FT /protein_id="CAX33877.1"
FT /translation="MQTITKTRTSKYLKSILNPASGPCHIPDDIVTRCSLRSETTTYNI
FT TAPGSGQGIFIFYPNSPFGWCGYHYTFDGTKYLYDNITGPLDTAQNLDQNYNYSRLVSQ
FT LLTLRSSTLPAGVYALNGTFNAITYDGCVSEANLPTTQYGQLLSLNSDVIDKVGNVLVG
FT DGVAILSLPNRFDVPFCRMNDPAPSTGNTGALFRSSIVDATANLRYEMQMAPIAIGAMP
FT AYNTILASINVDNVRSISVRGNIPLINSSRLNVTSVITYNVLYQDFTGATIYQETKAAP
FT ITIDPNYATGPNNQGGCSFMVESTFSAMPAGAKHTQPVAAVAFSIANIVQPTVSSWDVN
FT EFGFAPFSNVSTESTSSITLTVEAVSAAFPGMNSPVTVVAYQGLAGGSVLTLSGVSNYE
FT LIPNPSLKKNLPTSYGRHDPAELNYVKMVLANREELGVKTVFALPEYKQLLTRLEEFYN
FT LDTNTYAEAFDWGKLLRTIKDIAVPTLSTIFPQFGPLIGAGSALGDELLKSFAASGTAI
FT AASGTPITRASAVTPGVDLVDLRNYAMDNWDIVNMDLQNLTYNSQMLYTKKLYVGERLS
FT SEGPPRGVLFPTITMRNNALMSHMIYLAVPGNWSSRLPMNVRDNYSETANGKRIWGIAN
FT TYLGHIMTNQDITLLPILSIQGGFAIIPDEAPILEGTSCVSAILCAYRGDFQGIPPALV
FT TGNAKLIEGRYVVMPNPAQQMKKQIAAQKELKFIGADLSGPLLTIFHVINELSGLETKN
FT KTFDTVKHDQDHSRSVNLCADDDTMQQWQDLSAQISTQDDGFRKLIHILNWTNRNGLAD
FT MLYNFAETDPDGNRLYKTIAPLTAEYKARNPESKTPYEAQRAKAERISANLRKQYGEAF
FT TPEWVEQHGYRGPTSEEIRALTSQVARPEKIEAIIAATIKNNGGDKLSPDQRSEIEVAI
FT RNKGKGLNPDELMRALGREGTNLGSKAENFIINSGIKDEELKQRIREEIMTSGKGLSAD
FT RLRELMGVNRVEPRKPTPAVRKLVGALQAAPKATAQKQIQAPTPRARQPQRPQAEQTPL
FT QKLLMRTMEEES"
FT mat_peptide 55. .1452
FT /product="VP2 protein"
FT /note="cleaved from pre-VP2"
FT mat_peptide 1453. .1584
FT /product="pep44 peptide"
FT /note="cleaved from pre-VP2"
FT mat_peptide 1585. .1605
FT /product="pep7 peptide"
FT /note="cleaved from pre-VP2"
FT mat_peptide 1606. .1638
FT /product="pep11 peptide"
FT /note="cleaved from pre-VP2"
FT mat_peptide 1639. .2370
FT /product="VP4 protein"
FT mat_peptide 2371. .3231
FT /product="VP3 protein"
XX
SQ Sequence 3334 BP; 1040 A; 836 C; 735 G; 723 T; 0 other;
fm995220 Length: 3334 05-FEB-2010 Type: N Check: 3821 ..
1 gatgatggtt acggtcagcc aatatataat ctgaagcaaa taaaacaaaa
51 gatgcaaacc ataacaaaaa ccagaacttc aaaatacctt aaatcaatcc
101 tcaatccagc atctggtcca tgccatatac cagatgacat cgtaacaaga
151 tgctcattga ggtcagaaac tacaacttac aacataacag ccccaggttc
201 aggccagggc atattcatct tctacccaaa ctcaccattt ggatggtgcg
251 gttaccatta cacgttcgat gggactaaat acttgtatga taacattaca
301 ggacccttag atacggcaca gaacttagac cagaactaca actacagcag
351 actagtgtcc cagcttctta ctttaagatc ttcaacacta ccagctggtg
401 tttatgcttt gaatggtaca ttcaacgcta taacatacga cggttgtgtc
451 tctgaggcaa acctacctac cacgcaatac ggccagctgt tatcacttaa
501 cagcgacgtt attgacaaag taggtaacgt gttagtcggt gacggtgtgg
551 caattttgtc cttgccaaac agatttgatg tgccgttctg tagaatgaat
601 gacccagccc catcaacagg gaacacagga gcactattcc ggagctccat
651 agtcgacgct accgctaacc tgagatatga gatgcaaatg gcccccatag
701 ccataggggc tatgcccgca tacaacacta tcctggccag cattaatgtc
751 gacaacgtga gatccattag tgtcagaggt aatatacccc tgataaacag
801 ttctcggctg aacgtaacca gcgtcatcac ctacaacgtc ctctaccaag
851 actttacagg cgccacgata tatcaagaaa caaaagctgc ccccatcacc
901 attgatccca attacgccac cggccctaac aaccaaggcg ggtgttcctt
951 tatggtggag tcaactttta gcgcgatgcc agccggcgca aaacacactc
1001 agcccgtcgc tgctgtcgcg ttttctatag ccaatatagt tcagcctact
1051 gtgagctcct gggacgtgaa tgagtttggc ttcgcccctt tcagcaacgt
1101 atccactgaa tcaacttcat ctataaccct cactgtggag gccgtttccg
1151 cggccttccc ggggatgaac tctccggtga cagttgtagc ctaccaaggc
1201 ctcgctggtg gatcagtgct gaccctaagc ggagtgagta attacgaact
1251 aatacccaac ccttccctaa agaaaaactt accaacttca tacggcagac
1301 atgacccagc cgagctcaat tatgttaaga tggttttagc caaccgagaa
1351 gagcttggcg tcaaaaccgt ctttgcactt cccgagtaca aacagctact
1401 cactcggcta gaagagttct acaacctgga cactaacact tacgcggaag
1451 cattcgactg ggggaagcta ctcagaacaa taaaagatat agctgtaccc
1501 accctgtcga cgatttttcc ccagtttggc cctcttatag gagctggttc
1551 cgcccttggc gacgaattgc tgaaatcatt cgcagcatca ggcacggcaa
1601 tagcggcatc cggaactccc ataacgagag ccagtgctgt gacccctggt
1651 gtagaccttg tagacttaag aaactacgca atggacaatt gggacatagt
1701 aaacatggat ttacagaacc ttacatacaa ctctcaaatg ttatacacga
1751 agaagttgta tgtaggagaa agactatcgt ccgaaggacc ccctcgtgga
1801 gtattattcc cgacgatcac catgagaaac aacgcactca tgtcccacat
1851 gatatattta gccgtacctg gaaattggtc ctcgcgtcta cccatgaatg
1901 tgagggacaa ttattcagaa actgcaaatg ggaagaggat ctggggtata
1951 gcaaacacat acctaggcca tataatgacg aaccaggata taaccctctt
2001 acctatacta tcgattcaag ggggatttgc cattatacct gatgaggcac
2051 cgattctaga gggcacttct tgtgttagcg ccatcctatg tgcatacagg
2101 ggagattttc agggcatccc tcctgcatta gtgactggaa atgctaagct
2151 cattgaaggc cgttatgtag tcatgccaaa ccccgcccag cagatgaaga
2201 aacagatagc agctcaaaaa gagctcaaat tcataggtgc agatttatct
2251 ggaccactgc taaccatctt ccacgttatc aacgagctaa gtggattaga
2301 aaccaagaac aaaaccttcg acacagtgaa acatgatcag gaccattcaa
2351 gatcagtaaa tctatgcgct gacgatgata ccatgcagca gtggcaagac
2401 ctatctgcac agatcagcac tcaggacgac gggttcagaa aactgatcca
2451 catattaaac tggacgaaca gaaacggttt ggcagacatg ttgtacaatt
2501 tcgccgaaac tgacccagat ggaaacagat tatataaaac tatagcaccc
2551 ctcactgctg agtataaagc tagaaaccct gaatccaaga ctccctacga
2601 ggctcaaaga gccaaggctg aacgcatctc tgctaattta agaaaacaat
2651 acggagaagc attcacacca gagtgggttg aacaacacgg ttacagggga
2701 ccgacatccg aagagatcag ggctctgacc agccaggtcg cacggcctga
2751 gaagatcgaa gccataatag cagctacaat caagaacaac ggaggcgaca
2801 aactcagccc agatcagagg agtgaaatag aggtggccat tcgcaataaa
2851 ggcaaaggtc ttaacccaga tgaattgatg agggcactag gtagagaagg
2901 tactaacctg ggctccaagg cggagaactt tatcatcaat tcaggaatta
2951 aagacgaaga gctgaaacag agaattagag aagagatcat gaccagcgga
3001 aaagggttat cagccgacag gctaagagag ctcatgggtg tgaatagggt
3051 cgaacccaga aagccgactc cagctgttag gaaattggtc ggcgctctac
3101 aggctgcgcc taaagccaca gctcaaaagc aaatccaggc tccgactccc
3151 agagcaagac agccgcaacg gccgcaagcg gagcagacgc cattacagaa
3201 gctgcttatg aggactatgg aagaggaaag ttagacgtac gtaccaataa
3251 aagcaactgg tggtagctca tgtgaatgaa aaggcactag aatagctacc
3301 catctgggtc ttcctcagat tctctcacta tcaa