ID FM995221; SV 1; linear; genomic RNA; STD; VRL; 3243 BP.
XX
AC FM995221;
XX
DT 05-FEB-2010 (Rel. 103, Created)
DT 05-FEB-2010 (Rel. 103, Last updated, Version 1)
XX
DE Rotifer birnavirus strain Palavas segment B, genomic RNA
XX
KW .
XX
OS Rotifer birnavirus strain Palavas
OC Viruses; dsRNA viruses; Birnaviridae.
XX
RN [1]
RP 1-3243
RA Delmas B.;
RT ;
RL Submitted (04-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL Delmas B., Unite de Virologie et Immunologie moleculaires, INRA, Domaine de
RL Vilvert, INRA, F-78350, FRANCE.
XX
RN [2]
RA Boudinot P., Gibrat J.F., Delmas B.;
RT "Genome characterization of a Rotifer birnavirus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3243
FT /organism="Rotifer birnavirus strain Palavas"
FT /segment="B"
FT /host="Brachionus plicatilis"
FT /strain="Palavas"
FT /mol_type="genomic RNA"
FT /country="France:Languedoc-Roussillon"
FT /lat_lon="43.31 N 3.55 E"
FT /isolation_source="dying population of Brachionus
FT plicatilis in culture tanks"
FT /collected_by="Michel Comps"
FT /collection_date="1990"
FT /identified_by="Michel Comps"
FT /db_xref="taxon:595652"
FT CDS 91. .3228
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependant RNA polymerase"
FT /db_xref="GOA:D3GMG3"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR007098"
FT /db_xref="InterPro:IPR007100"
FT /db_xref="UniProtKB/TrEMBL:D3GMG3"
FT /protein_id="CAX33878.1"
FT /translation="MSDLFNSNKVNKTKATELFKVRGETEKEFLPQQFVAPKSDFSPLV
FT VENIVARNRLKAYQPRAIPQLEPVNIDTIPLINPSLLNFEGTPFKNDITYPLGSKSEFL
FT PKYTPQYFHLPYDEHLIKQIIYRYTNATIENSQEEMSFIRSVVEAAEKQAYGNGSIEGQ
FT LTRLSQMNQIRWGTGEKPRPAKSCYDILKSSLGSSTTIENLARIFSCYLPVGRVDSIID
FT QTFPGLFLKPSYYLDPEDDKLTQWFPSINMSSISGLPYMGKSKKDTFAEALVIADSFVG
FT GIMSVVKQYGIPGMSDAAQKKAVNDLKELMDEYWYLGCGILFPKAERYDRSKWSTKTRN
FT IFAMPFASHIIGSLISSPIMKNSLNATNYNTPSLYAFSPFHGGLDVILSKVRNAIGQHI
FT TFVYADNWYVAYWEEDRRTHTWYSIDLVKAESQTVPLDGTTLAYYLLTRGHTVKDPNTG
FT ELIPAYNVSWAYIALFVVPSLSIDAACLISNQQIQFPGQGSGNTWTFLLNHQKSAMLDY
FT SWRRAGCPRPDMTKNSPFELKVLTRTNIQVVIELEVKDLEVVMDNAISTSSTEGYFGKE
FT PSNNAPNTQPIIPLDLLGWDATYAKSLNRFIPVLASNRLASSVAMAKKDVSRDFKQKPY
FT HLQIYQLARFEALRMVGAWLYPSVDTALRERCDEIRKTLYKKFGSILAEDDWTEAFKNT
FT EFGSMQELIDIDISVPVTFKALNELNEGDPYSSITPQERKSMEEREKWDLDELVKLDYI
FT DSPNKNTGVEVFSEKTPKPMLSKSEMFATSMLINKLRTKRNEVIKAGYDPAIPKDKLPS
FT DVKKLAKEFDVIATMAHDEIVSIKSWMFRSKEYSLPSNKPGNMKSGGSNPLVSSRVPFE
FT RKEGKTDLKRGALFDKVGMGPRKIEQYKSGAPLEVLNVSRSAKKRAKARAKKEESNLPA
FT GEMETPTRKTAPMIQPAPVGIQDVQLPQPVESQTTRTKQQDQQVQQEDGTVRKLLGSLK
FT GVDYYGRPNYIPSKTVKNALNSKYFVKLVELSPNPLETIAIPDNIEALERFRSSSR"
XX
SQ Sequence 3243 BP; 1076 A; 734 C; 691 G; 742 T; 0 other;
fm995221 Length: 3243 05-FEB-2010 Type: N Check: 9941 ..
1 accggctcga gctgcggaat cgctctaggc tacaaatttt gatttttaat
51 agtacggtga aaaaggcagt ataacaaaaa caacggtaac atgagtgatt
101 tattcaacag caacaaagta aacaaaacta aagctaccga actattcaaa
151 gttcgtggtg agacggaaaa ggaattcttg ccccaacaat ttgtagctcc
201 taaaagcgat ttctctccct tagtcgtaga aaacatagtg gctaggaacc
251 ggctaaaagc ctaccagcct agagcgattc cgcagctcga gccggttaac
301 atagacacaa tacctttaat caacccatct ctcctgaact ttgaaggtac
351 accattcaag aacgacataa catacccact aggctctaag agtgaatttc
401 ttccgaaata cactccacag tattttcacc tgccttacga tgagcatctg
451 ataaaacaaa ttatataccg ctacaccaac gctacaatag agaattccca
501 agaagagatg tcttttatta ggagcgttgt tgaagcggcc gaaaaacagg
551 cttatggaaa tggttccatt gagggccagc tcacaagact ctcacagatg
601 aaccagatca ggtggggtac tggtgaaaaa cctaggcctg ctaagtcttg
651 ctatgatata cttaaaagtt cactgggtag ctctacgact atagagaatc
701 tggcacggat tttctcttgt tatttacctg taggtagagt agatagcatc
751 attgatcaaa cattcccggg gctattcttg aaaccgtctt attatttaga
801 ccccgaagac gacaagttaa cacaatggtt cccttccatc aacatgtcct
851 caatatcagg actaccctat atgggtaaat caaagaaaga cactttcgct
901 gaagcattgg tcatagccga ctcattcgtc ggcggcataa tgtcagtagt
951 caaacaatac gggatacccg gcatgtcgga cgctgctcaa aagaaagctg
1001 taaacgatct caaagagttg atggatgagt actggtatct aggttgtggc
1051 atactatttc caaaagctga aaggtatgac agatccaaat ggtccaccaa
1101 aactcgcaat atctttgcaa tgcctttcgc ctctcacata ataggaagct
1151 taatatcaag ccccatcatg aagaacagcc tgaacgcaac gaactataat
1201 acgccttcac tctatgcttt ttctccattc catggtggtc ttgacgtcat
1251 cctgtccaaa gttagaaacg ccataggcca acatatcacg tttgtgtatg
1301 ctgacaattg gtatgttgct tattgggaag aagatagacg cacccataca
1351 tggtacagta ttgacttagt taaagctgag tcccaaactg taccactcga
1401 tgggaccacc ttagcatact atttacttac aagaggccat actgtaaaag
1451 atcccaacac aggcgagttg ataccggcat acaatgtgtc ttgggcatat
1501 atagccctgt tcgtcgtacc atctctaagt atagatgctg cttgtttaat
1551 atcaaatcaa caaatacagt tcccaggcca aggttctggc aacacttgga
1601 ctttcttgct caaccaccag aaatcagcaa tgcttgacta ctcatggagg
1651 agagcagggt gcccaaggcc agacatgacc aagaactcac cttttgagct
1701 gaaagtttta acaagaacaa acatacaagt tgtcattgaa ctggaagtca
1751 aagacctgga ggtggtgatg gacaatgcaa tctcaacatc cagcacagaa
1801 ggctacttcg gaaaagaacc atcaaataac gctcctaaca cacaacccat
1851 aatcccgctt gacctgctag gctgggacgc cacatacgca aagagcttga
1901 acagattcat acctgtacta gcatcaaata gactggcttc gagtgtagca
1951 atggctaaga aggatgtctc tagagacttc aagcaaaaac cataccacct
2001 tcaaatatac caattagcga gatttgaagc actacgtatg gttggagcat
2051 ggttgtatcc ctcagtggac acagcattaa gagagaggtg tgatgagatc
2101 agaaaaaccc tctacaagaa attcggctcc atactcgctg aggacgactg
2151 gaccgaggcc ttcaagaaca ccgagtttgg ctcaatgcaa gaactgattg
2201 acatagacat atccgtccct gtcaccttca aagcattgaa cgaactaaat
2251 gaaggtgatc cttattctag tataacaccg caagaaagga agtcaatgga
2301 agaaagggaa aaatgggact tagatgaatt ggttaagctt gactacatcg
2351 actcccctaa caagaacaca ggagtggaag tattcagcga aaagactcca
2401 aaaccaatgc tgagtaaatc ggaaatgttc gctacctcaa tgctcattaa
2451 taaattgaga actaagcgca atgaagttat aaaagcaggg tacgatcctg
2501 ccattcctaa agacaagctc ccaagcgacg tcaagaagct ggcaaaagaa
2551 tttgacgtaa tagcaaccat ggcacatgat gaaatagtgt caatcaagtc
2601 ttggatgttt agaagtaaag aatacagctt gccgtcaaat aaaccaggga
2651 acatgaaatc ggggggttct aaccccttgg tttcttcaag agtcccattc
2701 gaaagaaaag aaggcaagac agacttaaaa aggggagctc tgtttgataa
2751 agtgggcatg ggcccgagaa aaatcgagca atacaagtcg ggggcccctc
2801 tagaagtgct caacgtctca cgatctgcta aaaagagagc gaaggcgaga
2851 gctaagaaag aggaaagcaa cctccctgca ggggagatgg aaactcccac
2901 caggaaaacg gcacccatga ttcaaccagc gccagtagga atacaggatg
2951 tacaactgcc tcaaccagta gaatcacaaa cgacacgaac aaaacaacaa
3001 gaccagcaag tgcagcaaga agatggtacg gtcaggaagc ttttgggtag
3051 tctcaaaggg gtagactact atggcaggcc taactacata ccatctaaaa
3101 ctgtgaaaaa tgcgcttaac tctaagtact ttgtcaaatt ggtagagttg
3151 tctccaaacc cgttggagac catagcaatt cctgacaaca tagaggccct
3201 agagcgattc cgcagctcga gccggtaatc actagtgcgg ccg