ID GU396990; SV 1; linear; genomic RNA; STD; VRL; 6511 BP.
XX
AC GU396990;
XX
DT 05-MAR-2010 (Rel. 104, Created)
DT 07-APR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Oat blue dwarf virus isolate OBDV-2r, complete genome.
XX
KW .
XX
OS Oat blue dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Tymoviridae; Marafivirus.
XX
RN [1]
RP 1-6511
RX PUBMED; 20224895.
RA Edwards M.C., Weiland J.J.;
RT "First infectious clone of the propagatively transmitted Oat blue dwarf
RT virus";
RL Arch. Virol. 155(4):463-470(2010).
XX
RN [2]
RP 1-6511
RA Edwards M.C., Weiland J.J.;
RT ;
RL Submitted (07-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Cereal Crops Research Unit, U.S. Dept. of Agriculture, Agricultural
RL Research Service, 1307 North 18th Street, Fargo, ND 58105-5677, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6511
FT /organism="Oat blue dwarf virus"
FT /host="oat"
FT /isolate="OBDV-2r"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /db_xref="taxon:56879"
FT CDS 115. .6318
FT /codon_start=1
FT /product="replicase-associated polyprotein"
FT /note="possesses sequence motifs similar to
FT methyltransferase, papain-like protease, helicase, and
FT polymerase motifs that are present in nonstructural
FT proteins of other positive strand RNA viruses"
FT /protein_id="ADD13602.1"
FT /translation="MTTYAFHPLLPTPTSFATVTGGGLKDVIETLSSTIHRDTIAAPLM
FT ETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKAHPHPVHKTIETHLLHKVWP
FT HYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPRYPNTSTSLPDTETAFMH
FT DALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHPDLYRFRFDGDRLIYEL
FT EGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCHSLLIQRGIPPMHAEHDS
FT ISFRGPRAVAIPEPSSLHQDLRHRLVPEDVYNALFLYVRAVRTLRVTDPAGFVRTQCSK
FT SEYAWVTSSAWDNLAHFALLTAPHRPRTSFYLFSSTFQRLEHWVRHHTFLLAGLTTAFA
FT LPPSAWLANLVARTSASHIQGLALARRWLITPPHLFRPPSPPSFALLLQRNSTGPILLR
FT GSRLEFEAFPSLAPQLARRFPFLARLLPQKPINPWIVASLAVAVAIPAASLAVRWFFGP
FT DTPQAMHDRYHTMFHPREWRLTLPRGPISCGRSSFSPLPHPPSPTPAPDSRAGPLQPPS
FT ALPSTHEPAPADLESPAPQAHAPQTEPPSPVIEQEARPDPFPAPAPRPAPTPSASAPSP
FT APTPSAPEPPSPTASEQAASLIPAPSSALVVEPSGVVSASSWGATNQPADQVDDSPLAR
FT DPSASGPVRFYRDLFPANYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATRISRE
FT ALWDCLTATCPDSFLDPKSIAQHGLSTDHFVILAHRFSLCANFHSAAHVIQLGMADATS
FT TFMINHTAGSAGLPGHFSLRLGDQPRALNGGLAQDLAVAALRFNISGDLLPTRSVHTYR
FT SWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIAQPRSVRLIHIAGF
FT PGCGKTHPITKLLHTAAFRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTWESSLLKSA
FT RILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRLIPEVSHL
FT APYLDYYCLWSYRVPQDVATFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNSMLTMTQ
FT CGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPALLNGG
FT PNSNLMFSAFFQGKSRHIRDWFPTLFPTATLLLSPLRQRHNRLTGALAPVEPSHLLLPD
FT LPSLLPLPASGPYSRAFPVRSRFAAAVKPFDRSDVLSWAPIAVGDGETNAPRIDTSFLP
FT ETRRPLHFDLPSFRPQAPPPPSDPAPSGTAFEPVYPGETFENLVAHFLPAHDPTDREIH
FT WRGQLSNQFPHIDKEYHLAAQPMTLLAPIHDSKHDPTLLAASIQKRLRFRPSASPYRIT
FT PRDELLGQLLYESLCRAYHRSPTSTHPFDEALFVECIDLNEFAQLTSKTQAVIMGNARR
FT SDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVFDAR
FT DRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFDQSQHGEAVVLERKKMERLSI
FT PDHLISLHVYLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAVINLEYAAAHVPTMVS
FT GDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKLA
FT IAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLA
FT LHLGEVPETIIQRLSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSLPEDPAVSSLQGEL
FT LHTFHAPMPSPPSLPLFGGLSPDNILTPHEFRTALYESSAYPTPPNSPTSMSGIHASQV
FT GPPPASDDRTDRQPSLPLAPRLVESSLAVPYVDVPFQWAVASYAGDSAKFLTDDLSGSS
FT HLSRLTIGYRHAELISAELEFAPLAAAFSKPISVTAVWTIASIAPATTTELQYYGGRLL
FT TLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPRFTYSVYANSGSANTPLITVMVRG
FT VIRLSGPSGNTVTATT"
FT CDS 5710. .6318
FT /codon_start=1
FT /product="21 kDa capsid protein"
FT /note="putative start site; believed to be translated from
FT a subgenomic RNA"
FT /protein_id="ADD13603.1"
FT /translation="MSGIHASQVGPPPASDDRTDRQPSLPLAPRLVESSLAVPYVDVPF
FT QWAVASYAGDSAKFLTDDLSGSSHLSRLTIGYRHAELISAELEFAPLAAAFSKPISVTA
FT VWTIASIAPATTTELQYYGGRLLTLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPR
FT FTYSVYANSGSANTPLITVMVRGVIRLSGPSGNTVTATT"
XX
SQ Sequence 6511 BP; 1068 A; 2779 C; 1285 G; 1379 T; 0 other;
gu396990 Length: 6511 07-APR-2010 Type: N Check: 9724 ..
1 gtgtcccagt gtcattgttc cgctcagttt cagatctgcc ggaactctcc
51 aagcatcccg ccccaaaagc cggctgctta aaatctgatc ttctccatct
101 cgtcaagtgt cgctatgacc acatacgcct tccatccgct gctccccacc
151 ccgacttcct tcgccactgt cactgggggt ggtttgaagg atgttatcga
201 aactctctcg tccaccatcc acagagacac aatcgcagca cccctcatgg
251 agaccctcgc ctcgccttat cgagactccc ttcgcgactt cccttgggcc
301 gtccccgcct ccgccttgcc cttcctccag gaatgcggca tcacggtcgc
351 cggccacggt ttcaaagctc atccccaccc tgtccacaaa accattgaga
401 cccacctcct ccacaaggtt tggcctcact atgcccaagt cccctcttcc
451 gtcctcttca tgaagccctc gaagttcgcc aaactccagc ggggcaacgc
501 caacttctct gcactccaca actatcgcct cactgccaaa gacaccccgc
551 gatatcccaa cacttcaacc tctctccccg acaccgagac cgccttcatg
601 catgacgctc tcatgtacta cacccccgct caaattgttg acctgttcct
651 ctcctgcccg aagctcgaga aactgtatgc ctccctcgtc gtcccccctg
701 agtcctcctt cacctccatc tctctccatc cagacctcta ccgctttcgc
751 tttgacgggg accgtctgat ctatgagttg gagggcaacc ccgcccacaa
801 ctatacccaa ccccgatccg ccctcgactg gcttcgcaca accaccatcc
851 gcggaccagg cgtttctctc accgtctcca ggctcgactc gtggggtccc
901 tgccactccc tcctcatcca gcgcggcatc ccccccatgc acgccgagca
951 cgactccatc tcgttcaggg gtccacgcgc tgtcgccatt cccgagccct
1001 cctccctcca ccaggatctg cgccaccgtc tcgtcccaga ggacgtgtac
1051 aatgccctat tcctctacgt ccgcgctgtc cgcacgctcc gcgtaaccga
1101 tcccgccggc ttcgtccgca cccagtgctc taagtccgag tacgcttggg
1151 tcacttcctc cgcttgggac aacttggccc acttcgccct ccttaccgcc
1201 ccacaccggc cccgcacctc gttctacctc ttctcctcta ccttccagcg
1251 cctcgagcac tgggtccgcc atcacacctt cctcctcgcc ggcctaacca
1301 cagcctttgc tctccctccg tctgcctggc tcgcgaacct cgtcgcccgc
1351 acgtccgctt cacatatcca aggcctcgcg ctcgcccgcc ggtggctcat
1401 cactccccct catctcttcc gccccccttc ccccccaagc ttcgctcttc
1451 ttctccagcg caactccacc ggaccaatcc ttctccgtgg ctcccgcctt
1501 gagttcgagg ccttcccctc tctcgcccca caactcgccc gtcgttttcc
1551 attcctcgct cgccttctcc cccagaaacc aatcaacccc tggattgtcg
1601 cgagcctcgc tgtcgccgtc gccatacccg ccgcttccct cgccgtccgc
1651 tggttcttcg gccccgacac cccccaagcc atgcacgacc gataccacac
1701 catgttccac cccagagagt ggcgcctcac cctgcccagg ggccccatct
1751 cctgcggccg ctccagcttc tccccccttc cccacccacc ttcgcccact
1801 cccgcccccg actcccgagc tggacctctc cagccacctt ccgctctacc
1851 atcgacccac gagccggctc ccgccgatct cgagtcccca gcccctcagg
1901 cccacgctcc ccagaccgag cctccgagtc ccgtgatcga gcaagaagcg
1951 cgtccggatc ccttccccgc tcctgcccct cggcctgctc ccaccccctc
2001 cgcttccgcg ccttcgcctg ccccaacacc ctcggccccc gagcccccct
2051 cgccgaccgc ttccgagcag gctgcgtccc tgattcccgc tccctcttcc
2101 gcccttgttg tggagccatc cggcgtcgtc tccgcctcat cctggggcgc
2151 caccaaccag ccggccgatc aagtcgatga ctcccctctc gctcgcgatc
2201 ccagcgcctc cggccccgtc cgcttctacc gagacctctt ccccgccaac
2251 tacgcgggag actctggcac cttcgacttc cgcgctcgcg cctcaggccg
2301 ctcccccacc ccataccccg ccatggactg cctccttgtc gccaccgagc
2351 aagccactcg tatctctcga gaggccctct gggactgcct tacagccacc
2401 tgccccgact cattcctcga ccccaagagt atcgctcagc acggcctcag
2451 caccgatcac ttcgtcatcc tcgcccatcg cttttcccta tgcgccaatt
2501 tccattccgc cgcgcacgtc attcaactcg ggatggccga tgccacctcc
2551 accttcatga tcaaccacac ggccggctcc gcgggcctcc cgggtcactt
2601 ctcgctccgc ctgggtgacc agccccgcgc cctaaacggc ggcctcgctc
2651 aggacctcgc cgtcgccgcc ctccgattca acatctccgg tgatctcctt
2701 ccaacccgat ccgttcatac ttataggtct tggccgaagc gtgccaagaa
2751 ccttgtgtcc aacatgaaga acggtttcga cggagttatg gccagcatta
2801 acccgattcg acccagcgat gcccgtgaga agatcgtcgc ccttgacggt
2851 ctcctggaca ttgcccaacc ccgatccgtc cgcctcatcc acattgccgg
2901 cttccctggc tgcgggaaaa cacacccgat caccaagctc ctacacaccg
2951 ccgccttccg tgacttcaaa ctcgccgttc cgaccaccga gctccggtct
3001 gagtggaaag agctcatgaa gctctcaccc tcccaggcct ggcgcttcgg
3051 cacctgggag tcctctcttc tcaagagcgc caggatcctc gtgatcgatg
3101 agatctacaa attgcctcga gggtacctag acctagccat ccactccgac
3151 tcgtccatcg agttcgtcat cgccctggga gatcccctgc aaggcgagta
3201 tcactccact catcccagct cctccaactc tcgcctcatc cccgaagtca
3251 gccatctcgc tccctacctc gactactact gcctctggag ttaccgcgtc
3301 ccccaagacg tcgccacttt cttccaggtt cagagccaca accccgctct
3351 cgggtttgcc cgtctctcga agcagtttcc cacgaccggg cgcgtcctca
3401 ccaactcgca gaactcgatg ctcaccatga cacagtgcgg ctactctgcc
3451 gtcaccatcg cctcaagcca gggttccacc tacagcggcg ccacgcacat
3501 ccacctcgac cgcaactcat cgctcctctc cccctcgaac tccctcgtcg
3551 ctctcactcg ctcgagaacc ggcgtgttct tttccggcga ccctgccctt
3601 ctcaatggtg gccccaactc caacctcatg ttctctgctt tctttcaggg
3651 caagtctcgc cacattcgtg actggttccc cacccttttc cctacggcca
3701 cgctcctcct ttcccccctc cgccaacgcc acaaccgcct cactggcgcc
3751 ctcgctcccg tcgaaccctc ccacctcctg ctgcctgacc tcccgagcct
3801 cctccctctc cccgcctccg gtccctactc ccgtgcattc ccagttcgat
3851 cccgcttcgc tgcggccgtc aagccttttg accggtcaga cgtcctctcg
3901 tgggccccga tcgctgtcgg tgacggggaa accaacgctc ctcgcattga
3951 cacctccttt ctgcccgaaa ctcgccgccc gcttcacttt gatcttcctt
4001 cgttccgccc ccaagcccca ccgcctccct ctgatccagc cccttctggg
4051 accgccttcg agcctgttta tcccggcgaa accttcgaaa atttggtcgc
4101 ccacttcctc ccggctcacg accccactga ccgcgaaatt cactggcgcg
4151 ggcagctttc caaccagttc ccccacatcg acaaagagta ccacctcgcg
4201 gctcagccaa tgacgctcct cgctcccatc cacgactcca agcacgaccc
4251 caccctcctc gctgcctcca tccagaaacg acttcgattt cgaccctccg
4301 cctctcccta ccgaatcacc cctcgtgacg agctgctcgg ccagctcctc
4351 tacgagagtc tctgtcgcgc gtatcatcgt tccccaactt ccacccaccc
4401 cttcgacgag gccctcttcg tcgagtgcat cgacctgaac gaattcgctc
4451 aactcaccag caaaactcag gccgtcatta tgggcaacgc ccgccgctct
4501 gacccagact ggcgctggtc cgccgtccgg atcttcagca aaacccagca
4551 caaggtcaac gaaggttcga tctttggagc ctggaaagct tgccagaccc
4601 ttgctctcat gcacgacgcc gtcgttctgc tccttggccc cgtcaagaag
4651 tatcaacgcg tcttcgatgc tcgagaccgc cccgcccacc tttacatcca
4701 cgccggccag acgccctctt ccatgagcct ttggtgccag acccacctca
4751 ctcccgctgt caagctcgcg aacgactaca ccgctttcga ccagtctcag
4801 catggcgagg ccgtcgtcct cgagagaaag aagatggaac gtctctccat
4851 cccggatcac ctcatctccc tccacgttta ccttaagacc cacgtcgaaa
4901 cccagtttgg ccctctcacc tgtatgcgcc taaccggcga gcccggcacc
4951 tacgacgaca atactgacta caacctcgcc gtcatcaacc tcgagtacgc
5001 ggctgcccac gttccgacca tggtctcggg cgacgattca ctccttgact
5051 tcgagccccc acgccgcccg gagtgggtcg ccatcgaacc ccttctagcc
5101 ctccgattca agaaagagcg cggtctgtat gccaccttct gcggctacta
5151 cgcctcgcga gttggctgcg tccgatctcc catcgctctc ttcgccaagc
5201 tcgccatcgc cgtcgacgac tcatccatct ccgacaagct cgccgcatac
5251 ctcatggagt tcgcggttgg ccactctctc ggcgactctc tctggtccgc
5301 cctccccctg tccgccgttc ccttccagtc agcctgcttc gacttcttct
5351 gccgccgcgc tccccgcgat ctaaagctcg cccttcacct gggcgaagtc
5401 cctgaaacca tcatccaacg cctctcccac ctctcctggc tgtctcatgc
5451 cgtctacagc ctccttccat cccgccttcg cctcgccatc cttcacagct
5501 cacgccagca ccgttccctc cccgaagacc cagccgtttc ttcgcttcag
5551 ggtgaattgc ttcacacgtt ccatgctcca atgccctctc ccccctcact
5601 cccacttttc ggcggtttat ctcccgacaa catcctcact ccccacgagt
5651 tccgcaccgc cctctacgaa agctccgcct accccactcc tcccaactct
5701 ccgacctcca tgtcaggaat ccatgcctcg caagttggtc cgccccccgc
5751 cagcgatgat cgcactgacc gccagccttc tcttcctctt gctcctcgtc
5801 ttgtggagag ctctctcgcc gtgccgtacg tcgacgtccc gttccaatgg
5851 gccgtcgcgt cgtacgccgg agactccgcc aaattcctca ccgacgacct
5901 ctcaggatcc tctcacctga gccgcctcac catcggctat cgccacgccg
5951 agctcatctc cgccgagctc gagtttgccc cccttgccgc cgccttctcc
6001 aagcccatct ccgtcaccgc cgtctggacc atagcctcca tcgccccagc
6051 caccaccacc gagctccagt actatggagg ccgactcctc accctcggag
6101 gccccgtcct catgggctcc gttacccgca tcccagccga cctcacccgc
6151 ctcaaccccg tcatcaagac cgccgtgggc ttcactgact gcccccgctt
6201 cacctactcc gtctacgcca acagcgggtc cgccaacact cctctcatca
6251 ccgtcatggt gcgaggagtc atccgcctct ccggcccttc gggcaacacc
6301 gtcaccgcca ccacctaagc cctctcaccg gtttcaacag gagtttcttc
6351 ctcgttcttc tcctgacgac caatgaacgt cgcttatctc ccctttacat
6401 ttctccgttc cccctccgtt ttcctctctg ttccattccc cctctccctc
6451 cccgtctcag caatgagtaa ggttccaggt cgattcaaag acctgatggg
6501 attttcctcg g