ID JF738112; SV 1; linear; genomic RNA; STD; VRL; 2058 BP.
XX
AC JF738112;
XX
DT 15-MAY-2011 (Rel. 108, Created)
DT 29-JUN-2012 (Rel. 113, Last updated, Version 4)
XX
DE Switchgrass mosaic virus isolate S2 polyprotein and hypothetical protein
DE genes, partial cds; and hypothetical protein gene, complete cds.
XX
KW .
XX
OS Switchgrass mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Tymoviridae; Marafivirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-2058
RX PUBMED; 22661377.
RA Agindotan B.O., Gray M.E., Hammond R.W., Bradley C.A.;
RT "Complete genome sequence of switchgrass mosaic virus, a member of a
RT proposed new species in the genus Marafivirus";
RL Arch. Virol. 0:0-0(2012).
XX
RN [2]
RP 1-2058
RA Agindotan B.O., Gray M.E., Hammond R.W., Bradley C.A.;
RT ;
RL Submitted (28-MAR-2011) to the INSDC.
RL Energy Biosciences Institute, University of Illinois, 1206 West Gregory
RL Drive, Urbana, IL 61801, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2058
FT /organism="Switchgrass mosaic virus"
FT /host="switchgrass cv. Cave-In-Rock"
FT /isolate="S2"
FT /mol_type="genomic RNA"
FT /country="USA:Champaign, IL"
FT /isolation_source="leaves were collected from a single
FT plant (S2) at SoyFACE experimental plot, near Champaign"
FT /collection_date="15-Jul-2010"
FT /identified_by="Bright Agindotan"
FT /note="acronym: SwMV"
FT /db_xref="taxon:1027869"
FT CDS <1. .2057
FT /codon_start=3
FT /product="polyprotein"
FT /note="ORF1"
FT /db_xref="GOA:F6M7T6"
FT /db_xref="InterPro:IPR002588"
FT /db_xref="InterPro:IPR008043"
FT /db_xref="UniProtKB/TrEMBL:F6M7T6"
FT /protein_id="AEE61366.1"
FT /translation="IADLFHQCPQLQKLYASLVVPAESSFTHLSLHPELYRFRFQGDDL
FT VYEPEGNPAANYTQPRRALEWLQTTGFTSGHEFFTVTLLDSFGPVHSLLIQRGRPPVFS
FT AEDSVSFRVPDAVALPAPASLHQDLRHRLVPRRVYDALFNYVRAVRTLRVTDPAGFVRT
FT QVGKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQSPLARVAHWLRTHTWALWCLA
FT SPAASLTAWFAASRFGRLTVLHTDRLRLFGCDLIGRRFWPILPFQSPEARFLWETHPAC
FT KSYTLFAGSAFECRVLGALAHRCSPSPTLSRLFPEAQPARWVVFGSLALAAVPLTALLV
FT RWFLGPDSPQALHDQYHATFHPDSWSLDLPRRLRSCVREPFLLTGAAPASIPTSAPENF
FT SSDTPRPLTSLQAQAEPSQPSDVQPPRPSAVQPQVAPEPAPAPISPEPAASLPISAEPE
FT PVFEPPTSHSPPAQPVADSEPTSQPSSRAPTPVRQAALLGADLRFGDLPPRSSWAQDPE
FT LSPLGESTQGTVFAQIPTPREPESALARLEVDPTASGPIMEFRDLQPGLYLGTTGSFLT
FT RARNSVSSTIQYPARAACLLVAVRNATSLPTATLWAALAANLPDSILDDGSLVRLGLTT
FT DHFAVLARIFSLRCRFVSDHIDVELGVADATSRFTIRHTPGHFELVADD"
FT CDS <1. .1008
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /db_xref="UniProtKB/TrEMBL:F6M7T7"
FT /protein_id="AEE61364.1"
FT /translation="KSPISSTSAPSSRSCTPPSSSRPSLPSPTFLSIPNFIAFVSRAMT
FT SCMSPKETQPPTTPSLVGHSSGSKPRASRLAMSSLPSLCSTPSAPCTRFSSREAAPPSS
FT RLRTPSPSGFLTPSPSRPPLPSTKTCDIVSSLGEFTTPCSTTSAPSEPSASPTQLASSG
FT PKSASRSTRGSRPPPGTTSSTSPCRPPQSVRTPLTRFSSRPSHVSRTGSGLTRGPSGVW
FT PRPPPLSPPGSQPLDSAASPSSTPTACGCSAATSSAVDSGRSCPSRALRPAFSGRPTPR
FT ASPTPSSRDLPLNAESLELWRTGALPRQLFPASSQKPSPHAGSFSALSPSRLFH"
FT CDS 1072. .1959
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF3"
FT /db_xref="UniProtKB/TrEMBL:F6M7T8"
FT /protein_id="AEE61365.1"
FT /translation="MPLSIPTPGLSTFLVGFDLAFESLSFSPGPLRLPFQPQPRRISAL
FT TPHALSPRFRPRPSHPNLPTFSRPDLQRFSPKWRPSRLPLPSVPSQQRPCLSQPNRSLF
FT SSPQPATARRPSLSPIQSLPLSRRPALPPLFGKQPCSGPTSASATFPPAPHGLKILSSP
FT LLASLPKAPFSPKSQLLESPRALSPALRWTPRPAAPSWNLETFSLASTWAPPAPSSLAP
FT GILFLPPSSTQREPLAFWSPSAMLPACQRPLSGPRWPPICRTPFLMTVLSSASGSPPTT
FT SPSSPASSLFVAAL"
XX
SQ Sequence 2058 BP; 294 A; 857 C; 465 G; 442 T; 0 other;
jf738112 Length: 2058 29-JUN-2012 Type: N Check: 7423 ..
1 aaatcgccga tctcttccac cagtgccccc agctccagaa gctgtacgcc
51 tccctcgtcg tcccggccga gtcttccttc acccaccttt ctctccatcc
101 cgaactttat cgctttcgtt tccagggcga tgacctcgtg tatgagcccg
151 aaggaaaccc agccgccaac tacacccagc ctcgtcgggc actcgagtgg
201 ctccaaacca cgggcttcac gtctggccat gagttcttta ccgtcactct
251 gctcgactcc ttcggccccg tgcactcgct tctcatccag agaggccgcc
301 cccccgtctt ctcggctgag gactccgtct ccttccgggt tcctgacgcc
351 gtcgccctcc cggcccccgc ttccctccac caagacctgc gacatcgtct
401 cgtccctcgg cgagtttacg acgccctgtt caactacgtc cgcgccgtca
451 gaaccctccg cgtcaccgac ccagctggct tcgtccggac ccaagtcggc
501 aagccggagt actcgtgggt cacgtcctcc gcctgggaca acctccagca
551 cttcgccttg cagaccgccg cagtccgtcc gaacacctct cacccgcttt
601 tccagtcgcc cctcgcacgt gtcgcgcact ggctcaggac tcacacgtgg
651 gccctctggt gtttggcctc gcccgccgcc tctctcaccg cctggttcgc
701 agcctctaga ttcggccgcc tcaccgtcct ccacaccgac cgcttgcggc
751 tgttcggctg cgacctcatc ggccgtcgat tctggccgat cttgcccttc
801 cagagccctg aggcccgctt tctctgggag acccaccccg cgtgcaagtc
851 ctacaccctc ttcgcgggat ctgcctttga atgccgagtc cttggagctc
901 tggcgcaccg gtgctctccc tcgccaactc tttcccgcct cttcccagaa
951 gcccagcccg cacgctgggt cgttttcggc tctctcgccc tcgcggctgt
1001 tccactgaca gccctccttg tccgctggtt cctgggcccc gattcccccc
1051 aagctcttca cgaccagtat catgccactt tccatcccga ctcctggtct
1101 ctcgaccttc ctcgtcggct tcgatcttgc gttcgagagc ctttccttct
1151 caccggggcc gctccggctt ccattccaac ctcagccccg gagaatttca
1201 gctctgacac cccacgccct ctcacctcgc ttcaggccca ggccgagcca
1251 tcccaacctt ccgacgttca gccgcccaga ccttcagcgg ttcagcccca
1301 agtggcgccc gagccggctc ccgctcccat cagtcccgag ccagcagcgt
1351 ccttgcctat ctcagccgaa ccggagcctg ttttcgagcc cccaaccagc
1401 cacagcccgc cggcccagcc tgtcgccgat tcagagccta cctctcagcc
1451 gtcgtcccgc gctcccaccc ctgttcggca agcagccttg ctcggggccg
1501 acctccgctt cggcgacctt cccccccgct cctcatgggc tcaagatcct
1551 gagctctccc ctcttggcga gtctacccaa ggcaccgttt tcgcccaaat
1601 cccaactcct agagagcccg agagcgctct cgcccgcctt gaggtggacc
1651 ccacggccag cggccccatc atggaattta gagaccttca gcctggcctc
1701 tacctgggca ccaccggctc cttcctcact cgcgcccgga attctgtttc
1751 ttccaccatc cagtacccag cgcgagccgc ttgccttctg gtcgccgtcc
1801 gcaatgctac cagcctgcca acggccactc tctgggccgc gctggccgcc
1851 aatctgccgg actccattct tgatgacggt tctctcgtcc gcctcgggct
1901 caccaccgac cacttcgccg tcctcgcccg catcttctct cttcgttgcc
1951 gctttgtgag cgaccacatc gacgtagagc tcggcgtcgc cgatgccacc
2001 tctcgcttca caattcgaca tacaccaggg catttcgagc tcgtcgccga
2051 tgattaaa