The amino acids around the cleavage site (4 before and 1 after) are shown followed by the number of accessions with this sequence.
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| Species | Acronym | P1/ HC-Pro |
HC-Pro/ P3 |
P3/ 6K1 |
6K1/ CI |
CI/ 6K2 |
6K2/ VPg |
VPg/ NIa-Pro |
NIa-Pro/ NIb |
NIb/ CP |
|||||||||
| BYMOVIRUS | |||||||||||||||||||
| Barley mild mosaic virus | BaMMV | PILQ/A | 9 | TILQ/S | 9 | VELQ/S | 9 | ITIE/G | 10 | ATLE/G | 10 | RNLQ/S | 1 | TYLQ/S | 3 | ||||
| RNMQ/S | 9 | TFLQ/A | 10 | ||||||||||||||||
| Barley yellow mosaic virus | BaYMV | IVLQ/A | 12 | YGLQ/A | 12 | IGLQ/A | 3 | IGLE/G | 19 | ITLE/A | 18 | IHMQ/A | 12 | IWLQ/A | 13 | ||||
| IELQ/A | 9 | IRFE/A | 1 | ||||||||||||||||
| ISFG/A | 1 | ||||||||||||||||||
| Oat mosaic virus | OMV | ISLQ/A | 1 | YGLQ/A | 1 | IELQ/A | 1 | VELE/G | 1 | VVLE/A | 1 | IKEQ/A | 1 | IVLQ/A | 5 | ||||
| Rice necrosis mosaic virus | RNMV | TYLQ/A | 1 | ||||||||||||||||
| Wheat spindle streak mosaic virus | WSSMV | VELQ/A | 1 | VELE/G | 1 | IVLE/A | 1 | IQTQ/G | 1 | IELQ/A | 6 | ||||||||
| Wheat yellow mosaic virus | WYMV | IALQ/A | 3 | YGLQ/A | 3 | IELQ/S | 3 | IDLE/G | 4 | VMLE/A | 4 | IQNQ/A | 3 | IELQ/A | 19 | ||||
| IALQ/G | 1 | HGLQ/A | 1 | GELQ/S | 1 | IQTQ/A | 2 | ||||||||||||
| IETQ/A | 1 | ||||||||||||||||||
| IPOMOVIRUS | |||||||||||||||||||
| Cucumber vein yellowing virus | CVYV | IRNY/T1 | 1 | IDFY/C2 | 1 | VEIQ/G | 1 | IELQ/G | 1 | LESQ/G | 1 | VEIQ/G | 1 | VEVQ/V | 1 | VHLQ/V | 1 | VELQ/A | 3 |
| 1, P1a/P1b; 2, P1b/P3 | |||||||||||||||||||
| Squash vein yellowing virus | SqVYV | IDEY/S1 | 1 | IDLY/S2 | 1 | IELQ/G | 1 | VELQ/S | 1 | LESQ/S | 1 | IELQ/G | 1 | IELQ/V | 1 | IEVQ/G | 1 | IELQ/A | 2 |
| 1, P1a/P1b; 2, P1b/P3 | |||||||||||||||||||
| Sweet potato mild mottle virus | SPMMV | IQFY/A | 1 | YKVG/G | 1 | VEQH/G | 1 | IESH/A | 1 | LESQ/S | 1 | IEQH/G | 1 | VDSH/V | 1 | VESH/G | 1 | VEPH/A | 16 |
| MACLURAVIRUS | |||||||||||||||||||
| Alpinia mosaic virus | AlpMV | QHFQ/M | 1 | ||||||||||||||||
| Cardamom mosaic virus | CdMV | MQLQ/M | 1 | EILE/M | 1 | QTLE/I | 1 | RKIQ/G | 1 | QQFQ/M | 6 | ||||||||
| Chinese yam necrotic mosaic virus | ChYNMV | ISLQ/M | 1 | ||||||||||||||||
| Maclura mosaic virus | MacMV | QVLQ/M | 1 | ||||||||||||||||
| Ranunculus latent virus | QELQ/M | 1 | |||||||||||||||||
| Narcissus latent virus | NLV | LELQ/M | 2 | ||||||||||||||||
| RYMOVIRUS | |||||||||||||||||||
| Agropyron mosaic virus | AgMV | IQHF/S | 1 | YNVG/G | 1 | VEHQ/A | 1 | VYHQ/S | 1 | VEHQ/S | 1 | VTFE/G | 1 | VAHE/S | 1 | VEHQ/H | 1 | VYHE/A | 3 |
| Hordeum mosaic virus | HoMV | IEHF/S | 1 | YNVG/G | 1 | VKHQ/A | 1 | VYHQ/S | 1 | VEHQ/S | 1 | VSFE/G | 1 | VGHE/S | 1 | VEHQ/H | 1 | VFHE/A | 2 |
| Ryegrass mosaic virus | RGMV | IKHY/S | 2 | YNVG/G | 2 | VTHQ/A | 2 | VTHQ/S | 2 | VHHQ/S | 2 | VHLE/G | 2 | VQHE/S | 2 | VSHQ/S | 2 | VVHE/A | 12 |
| TRITIMOVIRUS | |||||||||||||||||||
| Brome streak mosaic virus | BrSMV | IEYY/S | 1 | YEIG/G | 1 | VVFQ/S | 1 | SIYQ/S | 1 | VMYQ/K | 1 | AKFE/G | 1 | AVFE/S | 1 | VGFQ/N | 2 | CKFE/S | 3 |
| Oat necrotic mottle virus | ONMV | LRWY/S | 1 | YKIG/G | 1 | VEYQ/S | 1 | CEYQ/S | 1 | VSYQ/A | 1 | VKYE/G | 1 | SLYE/G | 1 | VNWQ/S | 1 | CVYE/S | 3 |
| Wheat eqlid mosaic virus | IQLY/G | 1 | YKIG/G | 1 | VEYQ/A | 1 | CEFQ/A | 1 | VMYQ/S | 1 | VRYE/G | 1 | AQFE/S | 1 | VQWQ/S | 1 | CEWE/S | 1 | |
| Wheat streak mosaic virus | WSMV | LRWY/C | 1 | YKIG/G | 5 | VEYQ/G | 5 | CEYQ/S | 5 | VSYQ/A | 5 | VKFE/G | 5 | STFE/G | 4 | VSWQ/S | 5 | CVYE/S | 78 |
| LRWY/G | 2 | SLFE/G | 1 | ||||||||||||||||
| FRWY/G | 2 | ||||||||||||||||||
| UNASSIGNED POTYVIRIDAE | |||||||||||||||||||
| Blackberry virus Y | YLQY/S | 1 | YRVG/G | 1 | IQFQ/S | 1 | IIFQ/A | 1 | IDFQ/S | 1 | ITFE/A | 1 | IVPE/G | 1 | ITFQ/N | 1 | IDFQ/S | 1 | |
| Spartina mottle virus | SpMoV | LHLQ/A | 1 | ||||||||||||||||
| FQLQ/A | 1 | ||||||||||||||||||
| Sugarcane streak mosaic virus | SStMV | IYHG/G | 1 | MHAG/K | 1 | MHAQ/A | 1 | IFHG/A | 1 | VGEQ/G | 37 | ||||||||
| VDGQ/G | 1 | ||||||||||||||||||
| Tomato mild mottle virus | TMMoV | ELSQ/E | 2 | ||||||||||||||||
| POTYVIRUS | |||||||||||||||||||
| Maize dwarf mosaic virus | MDMV | IEHY/A | 2 | YAVG/G | 2 | VIHE/G | 2 | VTHQ/S | 2 | VIHQ/G | 2 | VKHE/A | 1 | VEHE/A | 2 | VTEQ/G | 2 | VKHQ/A | 11 |
| VKFE/G | 1 | ||||||||||||||||||
| Sorghum mosaic virus | SrMV | IDHF/S | 2 | YVVG/G | 3 | VIHE/A | 3 | VTHQ/S | 2 | VIHQ/G | 3 | VCHQ/G | 3 | VEHE/S | 2 | VTEQ/G | 3 | VFHQ/A | 20 |
| ITHF/S | 1 | VAHQ/S | 1 | VEHE/A | 1 | VRHQ/A | 7 | ||||||||||||
| VYHQ/A | 1 | ||||||||||||||||||
| Sugarcane mosaic virus | SCMV | IEHY/A | 11 | YIVG/G | 10 | VIHE/G | 11 | VTQQ/S | 7 | VIHQ/G | 12 | VSHQ/G | 9 | VAHE/S | 11 | VEEQ/C | 24 | VFHQ/S | 51 |
| YLVG/G | 1 | VVQQ/S | 3 | VAHQ/G | 1 | VEEQ/R | 1 | VFHQ/A | 54 | ||||||||||
| VLHQ/G | 1 | VIHQ/S | 19 | ||||||||||||||||
| VVHQ/A | 3 | ||||||||||||||||||
| VYHQ/A | 1 | ||||||||||||||||||
| Johnsongrass mosaic virus | JGMV | ICHY/S | 1 | YIVG/G | 1 | VEHE/R | 1 | VKHE/G | 1 | VIHE/N | 1 | VEHE/G | 1 | VEHE/G | 1 | ISNE/S | 1 | VEHQ/S | 4 |
| VKHQ/S | 1 | ||||||||||||||||||
| Zea mosaic virus | ZeMV | VVHQ/S | 1 | ||||||||||||||||
| VIHQ/S | 1 | ||||||||||||||||||
| Pennisetum mosaic virus | PenMV | INHY/A | 1 | YIVG/G | 2 | VIHE/H | 2 | VVHQ/S | 2 | VIHQ/G | 2 | VTHQ/G | 2 | VTHE/A | 2 | VQEQ/G | 1 | VYHQ/S | 3 |
| IDHY/A | 1 | VMEQ/G | 1 | ||||||||||||||||
| Cocksfoot streak virus | CSV | MVEY/S | 2 | YQVG/G | 2 | VKHQ/A | 2 | VHHQ/M | 2 | VQHQ/T | 2 | VHHQ/G | 2 | VDHE/T | 2 | VSMQ/S | 2 | VSHQ/A | 2 |
| East Asian passiflora virus | EAPV | VVHY/S | 1 | YKVG/G | 1 | VSCQ/A | 1 | VKIQ/S | 1 | VQLQ/S | 1 | VSTQ/G | 1 | VELE/S | 1 | VQSQ/R | 1 | VSLQ/T | 2 |
| VSLQ/S | 1 | ||||||||||||||||||
| Bean common mosaic necrosis virus | BCMNV | IEHY/T | 4 | YRVG/G | 4 | VDTQ/A | 3 | VRPQ/S | 4 | VRLQ/G | 4 | VSTQ/G | 4 | VELE/S | 4 | VSVQ/S | 5 | VSTQ/S | 9 |
| GDTQ/A | 1 | ||||||||||||||||||
| Soybean mosaic virus | SMV | IQHY/S | 12 | YRVG/G | 14 | VSAQ/A | 8 | VKVQ/S | 12 | VQLQ/S | 16 | VSTQ/G | 12 | VEME/S | 14 | VTVQ/G | 15 | VSLQ/S | 49 |
| IVQF/S | 1 | CRVG/G | 1 | VSAQ/V | 5 | VRAQ/S | 3 | VPTQ/G | 1 | VEIE/S | 2 | VAVQ/S | 2 | VALQ/S | 1 | ||||
| IIQF/S | 2 | VSVQ/V | 1 | VTTQ/G | 3 | ||||||||||||||
| VSVQ/T | 1 | ||||||||||||||||||
| Watermelon mosaic virus | WMV | IQHY/S | 17 | YRVG/G | 17 | VSAQ/A | 15 | VKVQ/S | 16 | VQLQ/S | 17 | VTTQ/G | 17 | VEVE/S | 16 | VAVQ/S | 18 | VSLQ/S | 127 |
| VFAQ/A | 2 | VKVQ/G | 1 | VEVE/I | 1 | VYLQ/S | 1 | ||||||||||||
| ASLQ/S | 1 | ||||||||||||||||||
| VSLR/S | 1 | ||||||||||||||||||
| Fritillary virus Y | FVY | IHHY/S | 1 | YRVG/G | 1 | ESTQ/S | 1 | VMIQ/S | 1 | VQLQ/S | 1 | VTTQ/G | 1 | VDLE/S | 1 | VAVQ/S | 1 | VSLQ/S | 1 |
| Wisteria vein mosaic virus | WVMV | IQHY/S | 1 | YRVG/G | 1 | VSMQ/A | 1 | VKAQ/S | 1 | VQLQ/S | 1 | VSTQ/G | 1 | VEVE/S | 1 | VSVQ/S | 1 | VSLQ/S | 4 |
| Bean common mosaic virus | BCMV | IHHY/S | 11 | YRVG/G | 12 | VSVQ/A | 11 | VQMQ/S | 3 | VRLQ/G | 6 | VTTQ/G | 8 | VAVE/S | 9 | VATQ/S | 8 | VHLQ/S | 89 |
| VQIQ/S | 7 | VRLQ/S | 5 | VATQ/G | 3 | VDIE/S | 1 | VETQ/S | 3 | ||||||||||
| VQVQ/S | 1 | VTTE/S | 1 | LATQ/I | 1 | ||||||||||||||
| Telosma mosaic virus | VHHY/S | 1 | YRVG/G | 1 | VTTQ/G | 1 | VRAQ/S | 1 | VRLQ/S | 1 | VSTQ/G | 1 | VTTE/S | 1 | VKTQ/S | 1 | VSLQ/S | 1 | |
| Cowpea aphid-borne mosaic virus | CABMV | VQHY/S | 1 | YKVG/G | 1 | GRHQ/A | 1 | VRVQ/G | 1 | VCLQ/S | 1 | VTTQ/G | 1 | VGVE/S | 1 | GCTQ/S | 1 | VVLQ/S | 9 |
| VMLQ/S | 4 | ||||||||||||||||||
| VRIQ/S | 3 | ||||||||||||||||||
| Zucchini yellow mosaic virus | ZYMV | VDHY/S | 18 | YRVG/G | 20 | VATQ/A | 14 | VRLQ/G | 19 | VVLQ/S | 19 | VRVE/S | 21 | VELE/S | 19 | VETQ/S | 20 | VMLQ/S | 219 |
| VDHS/S | 1 | VTPQ/A | 1 | VRFQ/G | 1 | VMLQ/S | 2 | VILQ/S | 5 | ||||||||||
| VEHY/S | 1 | VSTQ/A | 6 | VKLQ/S | 2 | ||||||||||||||
| VLFY/S | 1 | VTAQ/A | 1 | VTLQ/S | 8 | ||||||||||||||
| VVLQ/S | 4 | ||||||||||||||||||
| Ceratobium mosaic virus | CerMV | VSLQ/S | 5 | ||||||||||||||||
| Florida passionflower potyvirus | VSLQ/S | 3 | |||||||||||||||||
| Clitoria virus Y | ClVY | VSLQ/F | 1 | ||||||||||||||||
| Diuris virus Y | DiVY | VSLQ/S | 1 | ||||||||||||||||
| Sirato 1 virus Y | VSLQ/S | 1 | |||||||||||||||||
| Sirato 2 virus Y | VSLQ/S | 1 | |||||||||||||||||
| Kennedya virus Y | KVY | VSPQ/S | 1 | ||||||||||||||||
| Eustrephus virus Y | VRMQ/S | 1 | |||||||||||||||||
| Cucurbit virus Y | VVLQ/S | 1 | |||||||||||||||||
| Hibbertia virus Y | HiVY | VSLQ/S | 2 | ||||||||||||||||
| Rhopalanthe virus Y | RhVY | VVLQ/G | 1 | ||||||||||||||||
| Calanthe mild mosaic virus | CalMMV | VTLQ/G | 1 | ||||||||||||||||
| Sarcochilus virus Y | SarVY | VRMQ/A | 1 | ||||||||||||||||
| Dasheen mosaic virus | DsMV | IVQY/A | 1 | YRVG/G | 1 | VEVQ/A | 1 | VRIQ/S | 1 | VQFQ/N | 1 | VTAQ/G | 1 | VAME/G | 1 | VQLQ/G | 2 | VVLQ/A | 12 |
| VVFQ/A | 1 | ||||||||||||||||||
| VTMQ/A | 1 | ||||||||||||||||||
| VVMQ/A | 1 | ||||||||||||||||||
| AVLQ/A | 1 | ||||||||||||||||||
| Vanilla mosaic virus | VanMV | VQFQ/S | 1 | VVTQ/G | 1 | VAME/G | 1 | VTMQ/A | 2 | ||||||||||
| VIMQ/V | 1 | ||||||||||||||||||
| Alstroemeria mosaic virus | AlMV | VHHQ/V | 2 | ||||||||||||||||
| Passion fruit woodiness virus | PWV | VSLQ/S | 1 | ||||||||||||||||
| Basella rugose mosaic virus (= Peace lily mosaic virus) | IHHY/S | 3 | YKVG/G | 3 | VAHQ/S | 2 | VRYQ/S | 2 | VQYQ/D | 3 | VEFQ/G | 3 | VASE/G | 1 | VSEQ/S | 3 | VVYQ/S | 4 | |
| VVHQ/S | 1 | VRHQ/S | 1 | VAPE/G | 2 | ||||||||||||||
| Banana bract mosaic virus | BBrMV | IDHY/S | 1 | YLVG/G | 1 | VNFQ/S | 1 | VGFQ/N | 1 | VEFQ/N | 1 | VAFE/G | 1 | VEFE/G | 1 | VEFQ/H | 1 | VEFQ/S | 5 |
| Beet mosaic virus | BtMV | TMHY/S | 3 | YRVG/G | 3 | VEYQ/A | 3 | VKYQ/S | 3 | VQYQ/S | 3 | VQYQ/G | 3 | VREE/G | 3 | VVEQ/G | 3 | VTYQ/G | 6 |
| Peanut mottle virus | PeMoV | IHQY/S | 1 | YVVG/G | 1 | VVYQ/A | 1 | VRYQ/S | 1 | VQYQ/S | 1 | VRYQ/G | 1 | VATE/G | 1 | VEYQ/S | 1 | VRYQ/S | 3 |
| Ranunculus mosaic virus | VTFQ/G | 1 | |||||||||||||||||
| Narcissus late season yellows virus | NLSYV | VYHQ/S | 2 | ||||||||||||||||
| Catharanthus mosaic virus | VYHQ/S | 1 | |||||||||||||||||
| Chilli ringspot virus | VYHQ/A | 2 | |||||||||||||||||
| Araujia mosaic virus | ArjMV | VEYQ/A | 1 | ||||||||||||||||
| Narcissus yellow stripe virus | NYSV | MKHY/S | 1 | YLVG/G | 1 | VTHQ/T | 1 | VYHQ/S | 1 | VQHQ/S | 1 | VHHE/A | 1 | VNHE/S | 1 | VYSQ/M | 1 | VFHQ/S | 2 |
| Scallion mosaic virus | ScaMV | IRQF/S | 1 | YAVG/G | 1 | VEHQ/S | 1 | VYHQ/A | 1 | VHHQ/T | 1 | VIHE/A | 1 | VEHE/S | 1 | VYAQ/M | 1 | VYHQ/A | 1 |
| Turnip mosaic virus | TuMV | IVHF/S | 69 | YRVG/G | 115 | VVHQ/A | 107 | VYHQ/T | 110 | VHHQ/N | 265 | VTHE/A | 290 | VDHE/S | 303 | VYAQ/T | 115 | VYHQ/A | 163 |
| IIHF/S | 5 | VVHQ/V | 2 | VYHQ/A | 7 | VNHQ/S | 11 | VVHE/A | 4 | VYPQ/A | 1 | ||||||||
| IIHY/S | 30 | VTHQ/A | 4 | VHHQ/T | 2 | VHHQ/S | 32 | VIHE/A | 10 | ||||||||||
| ILHY/S | 1 | VAHQ/A | 1 | VAHE/A | 3 | ||||||||||||||
| IVHY/S | 7 | VGHQ/A | 1 | ||||||||||||||||
| IEHF/S | 1 | ||||||||||||||||||
| ITHF/S | 2 | ||||||||||||||||||
| ITHY/S | 1 | ||||||||||||||||||
| Hyacinth mosaic virus | HyaMV | VRHQ/S | 3 | ||||||||||||||||
| VRHQ/P | 1 | ||||||||||||||||||
| Tobacco vein banding mosaic virus | TVBMV | IEHY/S | 1 | YRVG/G | 1 | VEHQ/A | 1 | VIHQ/S | 1 | VVHQ/S | 1 | VEHQ/G | 1 | VDHE/A | 1 | VEEQ/S | 1 | VVHQ/G | 14 |
| VVHQ/N | 3 | ||||||||||||||||||
| VVHH/G | 1 | ||||||||||||||||||
| Ranunculus mild mosaic virus | RanMMV | VFHQ/A | 3 | ||||||||||||||||
| Veltheimia virus Y | VRYQ/A | 1 | |||||||||||||||||
| Japanese yam mosaic virus | JYMV | ITHY/S | 4 | YLIG/G | 2 | VVHQ/A | 2 | VYHQ/A | 1 | VYHQ/S | 2 | VYHE/A | 1 | VQHE/S | 2 | VRQQ/M | 2 | VYHQ/S | 7 |
| IIHY/S | 1 | VYHQ/G | 1 | VHHE/A | 1 | VFHQ/S | 1 | ||||||||||||
| IVHF/A | 1 | ||||||||||||||||||
| IKHY/A | 1 | ||||||||||||||||||
| IVHY/S | 1 | ||||||||||||||||||
| IVRF/A | 1 | ||||||||||||||||||
| Sweet potato feathery mottle virus | SPFMV | IIQY/S | 1 | YIVG/G | 1 | VEHQ/G | 1 | VYHQ/S | 1 | VLHQ/T | 1 | VQHQ/G | 1 | VGHE/S | 1 | VYAQ/T | 2 | VYHQ/S | 79 |
| ITQF/S | 3 | VYAQ/A | 1 | VFHQ/S | 1 | ||||||||||||||
| VHHQ/S | 2 | ||||||||||||||||||
| Sweet potato virus G | SPVG | VHHQ/S | 4 | ||||||||||||||||
| Sweet potato virus 2 | SPV-2 | VYHQ/S | 17 | ||||||||||||||||
| Sweet potato latent virus | SPLV | VHHQ/A | 1 | ||||||||||||||||
| Plum pox virus | PPV | IVHY/S | 15 | YLVG/G | 47 | VVHQ/S | 52 | VHHQ/S | 50 | VHHQ/T | 36 | VVHQ/G | 30 | VDHE/S | 33 | VYTQ/S | 29 | VIHQ/A | 65 |
| IIHY/S | 26 | VLHQ/S | 1 | VHHQ/N | 3 | VQHQ/T | 1 | VIHQ/G | 4 | VGHE/S | 4 | VYNQ/S | 5 | VVHQ/A | 80 | ||||
| LVHY/S | 1 | VVHQ/N | 1 | VQHQ/S | 1 | VAHQ/G | 2 | VYNQ/A | 3 | VVHQ/V | 2 | ||||||||
| LCHY/S | 1 | AVHQ/G | 1 | VYNQ/S | 1 | LWHQ/A | 1 | ||||||||||||
| VHTQ/S | 1 | VTHQ/A | 2 | ||||||||||||||||
| VMHQ/A | 1 | ||||||||||||||||||
| VAHQ/A | 1 | ||||||||||||||||||
| Lettuce mosaic virus | LMV | MVQY/S | 4 | YRVG/G | 4 | VEHQ/A | 5 | VRHQ/S | 5 | IYHQ/S | 4 | VRHQ/G | 3 | VKHE/S | 4 | VQFQ/S | 4 | VYHQ/V | 23 |
| IRHQ/G | 1 | ||||||||||||||||||
| Twisted-stalk chlorotic streak virus | VEFQ/D | 8 | |||||||||||||||||
| Yam mosaic virus | YMV | MRQF/S | 1 | YQVG/G | 1 | VEHQ/S | 1 | VSHQ/S | 1 | VHHQ/S | 1 | VKHQ/G | 1 | ATHE/G | 1 | VKAQ/G | 1 | VSHQ/A | 32 |
| Potato virus V | PVV | MVQF/S | 2 | YRVG/G | 1 | VVHQ/A | 1 | VRHQ/S | 1 | VHHQ/S | 1 | VVHQ/G | 1 | VVHE/A | 1 | VREQ/A | 1 | VRHQ/A | 3 |
| Wild potato mosaic virus | WPMV | MIQY/S | 1 | YRVG/G | 1 | VVHQ/D | 1 | VRHQ/S | 1 | VHHQ/S | 1 | VTHQ/G | 1 | VAHE/A | 1 | VREQ/G | 1 | VRHR/A | 1 |
| Peru tomato mosaic virus | PTV | MIQF/S | 1 | YRVG/G | 1 | VKHQ/D | 4 | VRHQ/S | 4 | VHHQ/P | 1 | VEHQ/G | 2 | VVHE/A | 2 | VHEQ/G | 2 | VYHQ/A | 3 |
| MVQF/S | 3 | YQVG/G | 1 | VHHQ/S | 1 | VREQ/G | 1 | ||||||||||||
| Ecuadorian rocoto virus | VREQ/G | 1 | VSHQ/S | 1 | |||||||||||||||
| Pepper mottle virus | PepMoV | MEQY/S | 3 | YRVG/G | 3 | VVHQ/R | 1 | VRHQ/S | 3 | VHHQ/S | 3 | VSHQ/G | 3 | VKHE/A | 3 | VREQ/A | 3 | VRHQ/S | 2 |
| VTHQ/R | 1 | VHHQ/S | 1 | ||||||||||||||||
| VIHQ/R | 1 | VHHQ/A | 1 | ||||||||||||||||
| VVHH/S | 1 | ||||||||||||||||||
| Verbena virus Y | VerVY | MQQF/S | 1 | YRMG/G | 1 | VEHQ/K | 1 | VHHQ/S | 1 | VHHQ/S | 1 | VSHQ/G | 1 | VEHE/S | 1 | VQEQ/G | 1 | VSHQ/A | 1 |
| Pepper severe mosaic virus | PepSMV | MTHF/S | 1 | YRVG/G | 1 | VSHQ/K | 1 | VRHQ/S | 1 | VHHQ/K | 1 | VSHQ/G | 1 | VVHE/A | 1 | VREQ/A | 1 | VYHQ/A | 2 |
| Pepper veinal mottle virus | PVMV | VLHQ/A | 1 | ||||||||||||||||
| Pepper yellow mosaic virus | PepYMV | VEHE/A | 1 | VRHQ/A | 1 | ||||||||||||||
| Amaranthus leaf mottle virus | AmLMV | VHHQ/A | 2 | ||||||||||||||||
| Alternanthera latent virus | VHHQ/S | 1 | |||||||||||||||||
| Potato virus Y | PVY | MVQF/S | 79 | YRVG/G | 70 | VRHQ/R | 55 | VRHQ/S | 52 | VHHQ/A | 53 | VSHQ/G | 55 | VEHE/A | 58 | VVEQ/A | 52 | VHHQ/A | 39 |
| MIQF/S | 16 | YRIG/G | 1 | VKHQ/S | 3 | VHHQ/V | 5 | VQHQ/G | 1 | VAHE/A | 1 | VLQQ/A | 1 | VHHQ/G | 60 | ||||
| VHHQ/S | 1 | VHHQ/G | 3 | VVEQ/V | 4 | VYHQ/A | 18 | ||||||||||||
| VVEQ/P | 1 | VHHQ/V | 2 | ||||||||||||||||
| VYHQ/G | 1 | ||||||||||||||||||
| Bidens mosaic virus | BiMV | VHHQ/V | 2 | ||||||||||||||||
| Bidens mottle virus | BiMoV | VHHQ/A | 2 | ||||||||||||||||
| Pfaffia mosaic virus | PfMV | VYHQ/A | 1 | ||||||||||||||||
| Potato virus A | PVA | THHY/S | 7 | YRVG/G | 7 | VLFQ/A | 7 | VQFQ/S | 7 | VQFQ/S | 9 | VAFQ/G | 8 | VEFE/S | 9 | VYTQ/G | 7 | VYFQ/A | 27 |
| ISFQ/G | 1 | VHTQ/G | 1 | VYFQ/S | 1 | ||||||||||||||
| Sunflower mosaic virus | SuMV | IYAQ/H | 1 | LYFQ/G | 1 | ||||||||||||||
| Butterfly flower mosaic virus | BFMV | LYFQ/G | 1 | ||||||||||||||||
| Tobacco vein mottling virus | TVMV | ATHF/S | 2 | YKVG/G | 1 | VEFQ/A | 2 | VRFQ/S | 2 | VRFQ/S | 2 | VKFQ/G | 1 | VAFE/S | 1 | VRTQ/G | 2 | VRFQ/S | 2 |
| YRVG/G | 1 | VRFQ/G | 1 | VSFE/S | 1 | ||||||||||||||
| Meadow saffron breaking virus | VDFQ/S | 1 | |||||||||||||||||
| Tobacco etch virus | TEV | MTHY/S | 4 | YNVG/G | 4 | LVEQ/A | 3 | IYTQ/S | 4 | IYLQ/S | 4 | VYFQ/G | 4 | LTFE/G | 5 | VYSQ/G | 4 | LYFQ/S | 4 |
| LIEQ/A | 1 | LYFQ/G | 1 | ||||||||||||||||
| Chilli veinal mottle virus | ChiVMV | INHY/S | 1 | YRVG/G | 2 | VDHQ/A | 2 | VNHQ/S | 2 | VMHQ/S | 2 | VDHQ/A | 1 | VEHE/A | 2 | VREQ/A | 1 | VAHQ/A | 19 |
| LKHY/S | 1 | VNHQ/A | 1 | VSEQ/A | 1 | VAHQ/S | 25 | ||||||||||||
| VTHQ/S | 16 | ||||||||||||||||||
| VIHQ/S | 4 | ||||||||||||||||||
| VLHQ/S | 1 | ||||||||||||||||||
| Wild tomato mosaic virus | MVHF/S | 1 | YCVG/G | 1 | VQHQ/A | 1 | VNHQ/S | 1 | VMHQ/S | 1 | VDHQ/A | 1 | VEHE/A | 1 | VQEQ/S | 1 | VRHQ/S | 1 | |
| Ornithogalum mosaic virus | OrMV | VYEQ/G | 1 | VHHQ/A | 2 | ||||||||||||||
| VLHQ/A | 1 | ||||||||||||||||||
| VMHQ/A | 1 | ||||||||||||||||||
| VQHQ/A | 2 | ||||||||||||||||||
| VSHQ/A | 5 | ||||||||||||||||||
| VWHQ/A | 4 | ||||||||||||||||||
| Vallota mosaic virus | ValMV | VYHQ/A | 2 | ||||||||||||||||
| Colombian datura virus | CDV | IYLQ/A | 17 | ||||||||||||||||
| Zucchini yellow fleck virus | VYHQ/S | 2 | |||||||||||||||||
| Papaya ringspot virus | PRSV | MDQY/N | 7 | YIVG/G | 17 | VIHQ/A | 18 | VYHQ/S | 18 | VYHQ/S | 15 | VFHQ/G | 17 | VHHE/G | 16 | VFEQ/S | 17 | VFHQ/S | 78 |
| MEQY/N | 9 | LHCG/G | 1 | VYHQ/G | 2 | VYHE/G | 1 | AFEQ/S | 1 | VYHQ/S | 10 | ||||||||
| MEQY/S | 1 | ||||||||||||||||||
| Algerian watermelon mosaic virus | IIHY/S | 1 | YLVG/G | 1 | VAHQ/A | 1 | VYHQ/S | 1 | VYHQ/G | 1 | VYHQ/G | 1 | VVHE/G | 1 | VYEQ/G | 1 | VYHQ/A | 1 | |
| Papaya leaf distortion mosaic virus | PLDMV | MTHY/S | 2 | YLVG/G | 2 | VDHQ/A | 1 | VAHQ/S | 2 | VTHQ/S | 2 | VHHE/G | 2 | VSFE/G | 2 | VCAQ/S | 2 | VSHQ/S | 7 |
| VGHQ/A | 1 | ||||||||||||||||||
| Daphne virus Y | DVY | MHHY/S | 1 | YRVG/G | 1 | TEYE/S | 1 | VQYQ/S | 1 | VMYQ/G | 1 | VEYQ/G | 1 | VEYE/G | 1 | VIEQ/G | 1 | VCYQ/A | 1 |
| Ranunculus leaf distortion virus | |||||||||||||||||||