Sequence of DPV Eupatorium yellow vein virus
Eupatorium-infecting geminivirus genomic DNA, complete cds.
ACC No: AB007990
Dated: 2005-04-14 | Length: 2766 | CRC: 1736632793
!!NA_SEQUENCE 1.0
ID AB007990 standard; genomic DNA; VRL; 2766 BP.
XX
AC AB007990;
XX
SV AB007990.1
XX
DT 01-AUG-2000 (Rel. 64, Created)
DT 14-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE Eupatorium-infecting geminivirus genomic DNA, complete cds.
XX
KW .
XX
OS Eupatorium yellow vein virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2766
RA Onuki M., Hanada K.;
RT ;
RL Submitted (08-OCT-1997) to the EMBL/GenBank/DDBJ databases.
RL Masatoshi Onuki, Kyushu National Agricultural Experiment Station,
RL Laboratory of Molecular Plant Pathology; Suya 2421, Nishigoshi, Kumamoto
RL 861-1192, Japan (E-mail:onukim@knaes.affrc.go.jp,
RL Tel:81-96-242-1150(ex.3303), Fax:81-96-249-1002)
XX
RN [2]
RA Onuki M., Hanada K.;
RT "Genomic structure of a geminivirus in the genus Begomovirus from yellow
RT vein-affected Eupatorium makinoi";
RL J. Gen. Plant Pathol. 66:176-181(2000).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2766
FT /db_xref="taxon:186637"
FT /mol_type="genomic DNA"
FT /note="begomovirus"
FT /organism="Eupatorium yellow vein virus"
FT /clone="pMFL12"
FT CDS 296. .646
FT /codon_start=1
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProt/TrEMBL:Q9IR73"
FT /transl_table=1
FT /gene="V2"
FT /protein_id="BAB03582.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAIKYLQLVESTYSPDTVGRDLIRDL
FT ILVIRAKNYVEASCRYSDFHTRLQGTSPSELRQPVCQPCECPHCPRHKQKEIMGSTAHV
FT SEAQDVPNVQKP"
FT CDS 456. .1229
FT /codon_start=1
FT /db_xref="GOA:Q9IR72"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProt/TrEMBL:Q9IR72"
FT /transl_table=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="BAB03583.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYVSRANAPTVLVTNRRRSW
FT AQRPMYRKPRMFRMYRSPDIPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDVTRGNGLTH
FT RSGKRFCIKSCYIIGKIWMDENIKTKNHTNTVMFWLVRDRRPLTTPYGFQEAFNMFDNE
FT PSTATIKQDLRDRLQVLHKFQATVTGGQYASKEQAVIKKFWKINHHVTYNHQEQAKYEN
FT HTENALILYMASTHASNPVYATLKIRFYFYDSVQN"
FT CDS complement(1226. .1630)
FT /codon_start=1
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProt/TrEMBL:Q9IR71"
FT /transl_table=1
FT /gene="C3"
FT /protein_id="BAB03584.1"
FT /translation="MDSRTGILITAAQAQNGEYIWRVPNPLYFKITRHNQRSFNRDQDV
FT ITIQIQFNHNLRSQLGLHKCFLIFKIWSRLHPQTWHFLRVFRTQVMNYLDSLGVISINN
FT VIRAVDHVLYNRLQGTLYVRTFHDIKYKIY"
FT CDS complement(1371. .1781)
FT /codon_start=1
FT /db_xref="GOA:Q9IR70"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProt/TrEMBL:Q9IR70"
FT /transl_table=1
FT /gene="C2"
FT /protein_id="BAB03585.1"
FT /translation="MQPSSPSTAHSIQVPIKVQHRIAKSKKKNRRRRIDLNCGCSIFVG
FT LDCANYGFTHRDTHHCSSGTEWRVYLEGSKSPLFQDYEAQSTIIQQGPRRNNNTDTVQP
FT QPQIPAGFAQVFPHFQDLEPLTSSDMAFLEGL"
FT CDS complement(1678. .2766)
FT /codon_start=1
FT /db_xref="GOA:Q9IR69"
FT /db_xref="HSSP:1L5I"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProt/TrEMBL:Q9IR69"
FT /transl_table=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="BAB03586.1"
FT /translation="MPAPNRFKINAKNYFLTYPHCSLTKGEALSQIKQLQTPISKKFIR
FT ICRELHEDGSPHLHILIQFEGKYQCKNQRFFDLVSPSRSAHFHPNIQAAKSSSDVKSYM
FT EKDGDILDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDFVLQFH
FT NLNSNLDRIFAPPLEVFVCPFSSSSFDQVPEELEEWAAENVKSSARPWRPISIVIEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDWQ
FT SNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEFLDEEKNSALKAWAVKNATFVTLYSPLY
FT SGSHQSPAQDSQIEEEEPQEED"
FT CDS complement(2316. .2615)
FT /codon_start=1
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProt/TrEMBL:Q9IR68"
FT /transl_table=1
FT /gene="C4"
FT /protein_id="BAB03587.1"
FT /translation="MKMGALISTSSSNSKENTNAKINDSSTSYPQVGQHISIRTFRRLK
FT ARQMSSPTWRKTETSLILEFSKSMEDQLGEVANLPTTHMPRQSTQDQSHRHSIY"
XX
SQ Sequence 2766 BP; 722 A; 576 C; 609 G; 859 T; 0 other;
AB007990 Length: 2766 April 19, 2005 08:52 Type: N Check: 4146 ..
1 gttgactggt caatcggtgt ctctcaaagt tctatgcaat cggtgtctct
51 ggagtcttat ttatagtaga gactccaaat ggcataaatg gtaattattg
101 ggggtaggag cgtgtctttt tgaatttcaa atcgccaaag cggccatccg
151 tataatatta ccggatggcc gccgattttt tttgtggccc ctccctgtcg
201 gctgatcctg accgttcctc aacgcttaat taaatactgg tccccgtacg
251 tctttaagta tttaatactt gcgccctaag ctttatacgt gtataatgtg
301 ggatccatta gttaacgagt tccctgaaac cgtacacggt tttaggtgta
351 tgcttgcaat taaataccta cagcttgtag aatctacgta ttctccagat
401 acggtaggtc gcgatcttat tcgtgaccta atacttgtta ttcgtgctaa
451 gaattatgtc gaagcgtcct gcagatatag tgatttccac acccgcctcc
501 aaggtacgtc gccgtctgaa cttcgacagc ccgtatgtca gccgtgcgaa
551 tgcccccact gtcctcgtca caaacagaag gagatcatgg gctcaacggc
601 ccatgtatcg gaagcccagg atgttccgaa tgtacagaag ccctgatatc
651 cctaagggct gtgaaggccc gtgtaaggtc cagtcgtttg agaagaaaaa
701 tgatgttggt cattctggta ctttgttatg tgtttctgat gttactcgtg
751 gtaacggtct tactcatcgt tctggcaaga gattttgtat aaaatcttgt
801 tatattattg gtaaaatctg gatggatgaa aacatcaaga ctaagaatca
851 cactaacact gtcatgttct ggttagttag ggatagacgt ccccttacaa
901 ccccgtatgg atttcaagag gcattcaaca tgtttgataa cgaacccagt
951 acagctacta tcaagcagga cctaagagat cgtctgcagg tgttacacaa
1001 gttccaggct actgtcactg gtggacagta tgcgtccaag gaacaggctg
1051 tgatcaagaa gttctggaag atcaatcatc atgttactta caatcatcag
1101 gagcaggcta aatatgagaa tcatactgag aacgcattaa tattgtatat
1151 ggctagtact catgccagta atcccgtgta tgcaactttg aaaatcaggt
1201 tctattttta tgattctgtt cagaattaat aaattttata ttttatatca
1251 tgaaatgtcc gtacatacaa tgttccttgt aatctattat acaatacatg
1301 atcaactgct ctaattacat tattaattga aatcacaccc agactatcta
1351 agtagttcat cacttgtgtc ctaaagaccc tcaagaaatg ccatgtctga
1401 ggatgtaagc ggctccagat cttgaaaatg aggaaacact tgtgcaaacc
1451 cagctgggat ctgaggttgt ggttgaactg tatctgtatt gttattacgt
1501 cttggtccct gttgaatgat cgttgattgt gcctcgtaat cttgaaatag
1551 aggggatttg gaaccctcca gatatactct ccattctgtg cctgagctgc
1601 agtgatgagt atccctgtgc gtgaatccat agtttgcaca gtcaagtccc
1651 acgaagatag aacacccgca gtttagatca atcctcctcc tgcggttctt
1701 cttcttcgat ttggctatcc tgtgctggac tttgatggga acctgaatag
1751 agtgggctgt agagggtgac gaaggttgca tttttaactg cccaggcttt
1801 taatgcggaa ttcttttctt cgtccagaaa ttccgtatat gaagacgttg
1851 gacctggatt gcagaggaag attgttggga ttccaccttt aatttgaatt
1901 ggcttcccgt acttcgtgtt gctttgccag tccctttggg cccccatgaa
1951 ttctttaaaa tgctttagat agtgggggtc tacatcatca acgacgttgt
2001 accatgcgtc gttgctgtag atcttcggac tcagatccag atgaccgcat
2051 aggtagttat gtggacctaa cgacctagcc cacatcgttt ttcctgtcct
2101 actgtcaccc tctatgacaa tactaatcgg tctccatggc cgcgcagaag
2151 acttcacgtt ttctgcagcc cattcctcaa gttcttcagg aacttgatca
2201 aatgaagaac tagaaaaagg acaaacaaaa acctccaatg gaggagcaaa
2251 aatcctatct aaatttgaat ttaaattatg aaattgtaaa acaaaatctt
2301 tgggagcttt ctcccttaat atattgagtg ccgatgactt tgatcctgag
2351 ttgattgcct cggcatatgc gtcgttggca gattggcaac ctcccctagc
2401 tgatcttcca tcgacttgga aaactccaaa atcaaggatg tctccgtctt
2451 tctccatgta ggacttgaca tctgacgagc ttttagccgc ctgaatgttc
2501 ggatggaaat gtgctgacct acttggggat acgaggtcga agaatcgttg
2551 atttttgcat tggtattttc cttcgaattg gatgaggatg tggagatgag
2601 ggctcccatc ttcatgtaat tcacggcaga ttcttatgaa tttttttgat
2651 atcggtgttt ggagttgctt gatttgtgag agtgcttctc ctttagtaag
2701 agagcagtgt gggtatgtga ggaaataatt ctttgcattt attttaaaac
2751 gatttggggc aggcat