Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Mild[Shizuokua] genomic DNA, complete sequence.
ACC No: AB014346
Dated: 2009-01-13 | Length: 2791 | CRC: -1013154751
ID AB014346; SV 1; circular; genomic DNA; STD; VRL; 2791 BP.
XX
AC AB014346;
XX
DT 28-JAN-1999 (Rel. 58, Created)
DT 13-JAN-2009 (Rel. 99, Last updated, Version 6)
XX
DE Tomato yellow leaf curl virus - Mild[Shizuokua] genomic DNA, complete
DE sequence.
XX
KW .
XX
OS Tomato yellow leaf curl virus - Mild[Shizuokua]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2791
RA Kato K., Onuki M., Fuji S., Hanada K.;
RT ;
RL Submitted (18-MAY-1998) to the EMBL/GenBank/DDBJ databases.
RL Contact:Kimihiko Kato Shizuoka Agricultural Experiment Station, Plant
RL Breeding Division; 678-1 Tomioka, Toyoda-Cho, Iwata-Gun, Shizuoka 438-0803,
RL Japan
XX
RN [2]
RA Kato K., Onuki M., Fuji S., Hanada K.;
RT "The first occurrence of tomato yellow leaf curl virus in tomato
RT (Lycopersicon esculentum Mill.), in Japan";
RL Nippon Shokubutsu Byori Gakkaiho 64:552-559(1998).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2791
FT /organism="Tomato yellow leaf curl virus - Mild[Shizuokua]"
FT /host="Lycopersicon esculentum"
FT /strain="Shizuoka"
FT /isolate="Gemini-S"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:270154"
FT TATA_signal complement(63. .68)
FT TATA_signal 283. .288
FT CDS 318. .668
FT /codon_start=1
FT /transl_table=1
FT /gene="V1"
FT /product="precoat"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q786K5"
FT /protein_id="BAA74436.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT CDS 478. .1254
FT /codon_start=1
FT /transl_table=1
FT /gene="V2"
FT /product="coat protein"
FT /db_xref="GOA:Q9YZV6"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q9YZV6"
FT /protein_id="BAA74437.1"
FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYD
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1251. .1655)
FT /codon_start=1
FT /transl_table=1
FT /gene="C3"
FT /note="protein involved in a virus replication"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q9YZV5"
FT /protein_id="BAA74438.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRHQVLKYLDSIGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT polyA_signal 1253. .1258
FT polyA_signal complement(1291. .1296)
FT CDS complement(1396. .1803)
FT /codon_start=1
FT /transl_table=1
FT /gene="C2"
FT /note="protein involved in virus movement"
FT /db_xref="GOA:Q9W826"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q9W826"
FT /protein_id="BAA74439.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1712. .2791)
FT /codon_start=1
FT /transl_table=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q9YZV4"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q9YZV4"
FT /protein_id="BAA74440.1"
FT /translation="MAPPKRFQINCKNYFLTYPKCSLTKEEALSQLKNLETPTNKKYIK
FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYV
FT DKDGNTVDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELIPKDYILQFH
FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVVSSAARPWRPNSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL
FT FASINQGPTQDSQEETNKA"
FT CDS complement(2332. .2634)
FT /codon_start=1
FT /transl_table=1
FT /gene="C4"
FT /note="protein involved in virus movement"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q786K4"
FT /protein_id="BAA74441.1"
FT /translation="MGNHISMCLSNLKGNSSAKISDSSTWYPQAGQHISIQTFRELNPV
FT QTSSLMSIRTETPSTGVSFRSTDDLHVGVSSQPMTLTPQLLTQAVSQRLLESLKN"
XX
SQ Sequence 2791 BP; 762 A; 541 C; 611 G; 877 T; 0 other;
ab014346 Length: 2791 13-JAN-2009 Type: N Check: 6884 ..
1 atggtcaatg agtaccgatt gaccaagatt tttacactta tccctggtgt
51 atcggtactc aatatatagt gagtaccaaa tggcattttg gtaattttgt
101 aaaagtacat tgcaattcaa aattcaaaat tcaaaaatca aatcattaaa
151 gcggccatcc gtataatatt accggatggc cgcgcctttt ccttttatgt
201 ggtccccatg aaggttccac agacgtcact gtcaaccaat caaattgcat
251 ccttaaacgt tagataagtg tgcatttgtc tttatatact tgctccccaa
301 gtagtttgtc ttgcaatatg tgggatccac ttctaaatga atttcctgaa
351 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt
401 tgaggaaact tacgagccca atacattggg ccacgattta attagggatc
451 ttatatctgt tgtaagggcc cgtgactatg tcgaagcgac caggcgatat
501 aatcatttcc acgcccgcct cgaaggttcg ccgaaggctg aacttcgaca
551 gcccatacag cagccgtgct gctgtcccca ttgtccaagg cacaaacaag
601 cgacgatcat ggacgtacag gcccatgtac cggaagccca gaatatacag
651 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag
701 tacagtctta tgagcaacgg gatgatatta agcatactgg tattgttcgt
751 tgtgttagtg atgttactcg tggatctgga attactcaca gagtgggtaa
801 gaggttctgt gttaaatcga tatatttttt aggtaaagtc tggatggatg
851 aaaatatcaa gaagcagaac cacactaatc aggtcatgtt cttcttggtc
901 cgtgatagaa ggccctatgg aaacagccca atggattttg gacaggtttt
951 taatatgttc gataatgagc ccagtaccgc aacagtgaag aatgatttgc
1001 gggataggtt tcaagtgatg aggaaatttc atgctacagt tattggtggt
1051 ccctctggaa tgaaggaaca ggcattagtt aagagatttt ttagaattaa
1101 cagtcatgta acttataatc atcaggaggc agccaagtac gataaccata
1151 ctgaaaacgc cttgttattg tatatggcat gtacgcatgc ctctaatcca
1201 gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa
1251 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt
1301 tttcaagtac atcatacaat acatgatcaa ctgctctgat tacattgtta
1351 attgaaatta caccaatact atctaaatac ttaagaactt gatgtctaaa
1401 tactcttaag aaacgaccag tctgaggctg taatgtcgtc caaattcgga
1451 agttgagaaa acatttgtga atccccaata ccttcctgat gttgtggttg
1501 aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg
1551 gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa
1601 aaacgccatt ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa
1651 tccatgattg ttgcagttga ggtggaggta gtatgagcag ccacagtcta
1701 ggtctacacg cttacgcctt attggtttct tcttggctat cttgtgttgg
1751 accttgattg atacttgcga acagtggctc gtagagggtg acgaaggttg
1801 cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga
1851 tattccctat atgaggatgt aggtcctgga ttgcagagga agatagtggg
1901 aattccccct ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc
1951 agtccctctg ggcccccatg aattccttga agtgctttaa ataatgcggg
2001 tctacgtcat caatgacgtt gtaccatgca tcattactgt acacctttgg
2051 gcttaggtct agatgtccac ataaataatt atgtgggcct agagacctgg
2101 cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatactatta
2151 ggtctccatg gccgcgcagc ggaagacacg acgttctcgg acacccatac
2201 ttcaagttca tctggaactt gattaaaaga tgaagataaa aagggagaaa
2251 tataaggagc cggaggctcc tgaaaaattc tatctaaatt actatttaaa
2301 ttatgaaatt gtaaaatata atctttcggt attaattctt taatgattct
2351 aagagcctct gacttactgc ctgagttaag agctgcggcg taagcgtcat
2401 tggctgactg ctgaccccca cgtgcagatc gtccgtcgat ctgaaactca
2451 ccccagtcga cggtgtttcc gtccttatcg acataagact tgacgtctga
2501 actggattta gctccctgaa tgtttggatg gaaatgtgct gccctgcttg
2551 gggataccag gtcgaagaat cgctgatttt ggcacttgaa tttcccttca
2601 aattggataa gcacatggag atgtggttcc ccattctcgt ggagttctct
2651 gcaaactttg atgtattttt tatttgtggg ggtttctagg ttttttaatt
2701 gggaaagtgc ttcttctttc gttaaggagc acttaggata tgtgaggaaa
2751 taatttttgc aatttatttg gaagcgcttg ggaggagcca t