Sequence of DPV Rice virus X
Dianthovirus RVX1 ORF1, ORF2, ORF3, ORF4, ORF5 genes for 35 kDa protein, 54 kDa protein, 15 kDa protein, 28 kDa protein, 33 kDa protein, complete cds.
ACC No: AB033715
Dated: 2003-07-07 | Length: 4486 | CRC: 1638887533
!!NA_SEQUENCE 1.0
ID AB033715 standard; RNA; VRL; 4486 BP.
XX
AC AB033715;
XX
SV AB033715.3
XX
DT 06-JUL-2000 (Rel. 64, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 5)
XX
DE Dianthovirus RVX1 ORF1, ORF2, ORF3, ORF4, ORF5 genes for 35 kDa protein, 54
DE kDa protein, 15 kDa protein, 28 kDa protein, 33 kDa protein, complete cds.
XX
KW .
XX
OS Dianthovirus RVX1
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Dianthovirus.
XX
RN [1]
RP 1-4486
RA Miranda G.J., Aliyari R., Shirako Y.;
RT ;
RL Submitted (19-OCT-1999) to the EMBL/GenBank/DDBJ databases.
RL Yukio Shirako, University of Tokyo, Asian Center for Bioresources and
RL Environmental Sciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, Japan
RL (E-mail:shirako@ims.u-tokyo.ac.jp, Tel:81-3-5841-2678, Fax:81-3-5841-8036)
XX
RN [2]
RA Miranda G.J., Aliyari R., Shirako Y.;
RT "Nucleotide sequence of a Dianthovirus RNA1-like RNA found in grassy
RT stunt-diseased rice plants";
RL Arch. Virol. 146:225-238(2001).
XX
DR GOA; Q9IR21.
DR SPTREMBL; Q9E9R0; Q9E9R0.
DR SPTREMBL; Q9IR19; Q9IR19.
DR SPTREMBL; Q9IR20; Q9IR20.
DR SPTREMBL; Q9IR21; Q9IR21.
DR SPTREMBL; Q9IR22; Q9IR22.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4486
FT /db_xref="taxon:106518"
FT /mol_type="genomic RNA"
FT /note="Dianthovirus RNA1-like genome"
FT /note="RVX1:Rice virus X RNA 1"
FT /organism="Dianthovirus RVX1"
FT CDS 129. .1055
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IR22"
FT /transl_table=1
FT /gene="ORF1"
FT /product="35 kDa protein"
FT /protein_id="BAA97673.1"
FT /translation="MYPLDLVALIKRVQAWSPEKLFTWLWDVSARCVRAFVRWFWKAVD
FT YTGASRIIEHSFFEKTLPHVMEAEYNLRLLDQMEARNNAFRMASNVKTDGDSDSESSDE
FT EDDEELLRKNLERDIFADLLKDAKEQYKSHLEETRELEIIQARVKADNEEAARIESRYN
FT HHKAVDDCLEVLVYEANEAKNLQQISYLKSGKYDKCVKTVRPGCSVALIKSAIDMIRSR
FT HMVPDSSFNRIDEAAIRATALDFAASFNMDAKTTHIVVTGVVGICCLPDPKDIENIKVA
FT YHPKALQMRDLVSDLRASLPSFTPADF"
FT CDS 1229. .2662
FT /codon_start=1
FT /db_xref="GOA:Q9IR21"
FT /db_xref="SPTREMBL:Q9IR21"
FT /transl_table=1
FT /gene="ORF2"
FT /product="54 kDa protein"
FT /protein_id="BAA97674.1"
FT /translation="MIVSLEQRVFRVKKDGAFVRPPLPVPGAFNSCIAFRILWLAKLHS
FT EGPVLKSTVAEVVQCYTAEKRKLYEAAAQTLAWKPICRRDSHIRAFIKVEKLESDVKDP
FT VPRTIQPRSRRYNLCLGQYLRLNEKRFTRTIDLVFGEATVMSGYDNVTQARYLRSKWDS
FT YPDPVAIGLDASRFDQHCSPEALEFEHSFYTKVFNDPTLDELLSWQRVNKGTAVVMTGE
FT CLKYEVNGCRMSGDINTSLGNKLLMCAMVWTYLQAHDIDAKLANNGDDCVLFCSAGSVA
FT KIMSTLPGCFLNWGYTMEVEDPVRIFERTVFCRSQPVCVDGTWAMIRQLGSLSRDCFST
FT HDWSNEMTFRDNMNAIGQCNGIINDGVPVHMEQAKAMWRAGGSRNFNVETLRSQIEYSW
FT RERLGNRDRLLWSPVVPSTRLSYFLAFGIEPCVQEAVEAYLARVSLSAGGQTLPGLPRH
FT YSRIHKDLLRCRTANFFAS"
FT CDS 2307. .2708
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IR20"
FT /transl_table=1
FT /gene="ORF3"
FT /product="15 kDa protein"
FT /protein_id="BAA97675.1"
FT /translation="MVLSTTEFLSTWSKQKRCGGLAAVAISMLKHCVARLSTVGENGWG
FT IEIGCFGAQWFQAHVCPTSLLSASNLVCKRRLRHIWPGCPFRPGDKPYQVCRAITHAFT
FT RIYYDVEPPTSSPVKRHEPWATRSRSQTP"
FT CDS 2632. .3357
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9IR19"
FT /transl_table=1
FT /gene="ORF4"
FT /product="28 kDa protein"
FT /protein_id="BAA97676.1"
FT /translation="MSNRQLLRQLNAMNLGQPAPARRRRRRQQPRVVVVQQAPPPPPRR
FT RRRNRRNTSAPDRYVGLGLSPAERSLLRGTQNSKVIITVEDSTEHITVTSDRVGQEPML
FT LGKWMRSTFERARVAAIEIRTQSVTPNGEPNDDSAARFVWQMGSQDLFCEWHHEHIVAN
FT TGPKDDDVWFFQPPADVAALEEHIDTSRLVVEGTFQLHLRIHYRQPAQFRVGTLHGGYT
FT RDPNTWMDNDNKTITATGR"
FT CDS 3382. .4281
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9E9R0"
FT /transl_table=1
FT /gene="ORF5"
FT /product="33 kDa protein"
FT /protein_id="BAB11917.2"
FT /translation="METSRTYNLEAHKSKDCECEVSVSHHSTHAKSGKKQASKRASGSK
FT SSQTSVSTNTNIASRRQPGKQMVVPDHDASLDAVVPQLETLEISQVASRDSNRRRGSRR
FT SATPPSDDGLDTFSDTRSETRHTEGNWAQHPNAGSWSQLSLNEQHYEVATGTPVMPPNP
FT GPTQPRTRLPKTQVHVDGAGDVVTAPHADWDRYQAYLDRVKRDYGGIGFGNRPLVKSVN
FT GYAHMPNSTDILGHRHPMFIVWQQINCYGHVVKGLETIDGMFGIGWHFDLVFRNMKRIH
FT EYLEGVGCVPYHKLKDFA"
XX
SQ Sequence 4486 BP; 1113 A; 1173 C; 1202 G; 998 T; 0 other;
AB033715 Length: 4486 July 15, 2003 09:15 Type: N Check: 3606 ..
1 acaagcctta ccagcttgta agcctttcgc tcaatactcg gcgtgcaaac
51 tgagatatag cgatttgtgc gtgcttcggc aacggtacct ttctgtgagg
101 tcaaacagac gtgccaccac acgttaaaat gtatcccctg gatttggtcg
151 ctttgatcaa gagggtccag gcgtggagcc cggaaaaatt gttcacctgg
201 ctgtgggacg tcagtgcacg atgcgttcgt gcattcgtca ggtggttctg
251 gaaggcagtt gactacactg gtgcatctcg tataatcgag cacagcttct
301 tcgagaagac cctcccacat gtgatggaag ctgaatacaa cctccgcttg
351 ctggatcaaa tggaggcgcg caacaacgcc ttcagaatgg ccagcaacgt
401 caagaccgac ggagacagtg actccgagag ttctgacgag gaagatgacg
451 aagagctgtt gcgcaagaac cttgagagag acatcttcgc tgatttgctc
501 aaagatgcca aggagcagta caagtcacat ttagaggaaa cgcgtgagct
551 cgaaattata caagcccggg tcaaggcaga caacgaggag gcagcacgta
601 tcgagtcgcg gtacaatcac cacaaggcgg tcgacgactg cttagaggtg
651 ctcgtgtacg aagcgaatga ggccaagaac ctccaacaaa ttagctacct
701 caagagcggc aaatacgaca agtgcgtcaa gactgtacgc cctggttgtt
751 ctgtcgcctt aataaagtca gccatcgata tgatccgcag ccggcacatg
801 gtaccagata gttcgttcaa ccgcatagac gaggcggcca ttagggcaac
851 agccctcgat tttgccgcgt cgtttaacat ggacgccaag accactcata
901 tcgttgtcac aggagttgta ggcatttgtt gtcttcccga cccaaaggac
951 atcgaaaaca tcaaggtggc gtatcatccc aaagccctgc agatgaggga
1001 cttggtgagt gatctgaggg cgagtttgcc ctcgttcact cccgcggatt
1051 tttaggtggc ccaatccgct tcctcccaac tgacacacca cataatcaat
1101 tgcagttggc tgaggtgagg gtggcggaga aacgggcgag tgtcgttccg
1151 aaggtgcgtt atgtgtacgg cctaccggcc ctctcggctg gcctgcacgt
1201 gaccattcat aggccttcgt tgcataacat gattgttagt ttagaacagc
1251 gtgtcttccg ggtcaagaag gatggagcat ttgtacgccc acctttgccg
1301 gttccaggcg cgtttaactc atgcattgca tttcgcattt tgtggctcgc
1351 aaagctgcat tccgaagggc ccgtgttgaa aagcacagtg gccgaagtgg
1401 tgcagtgtta tacagcggaa aaacggaaac tttatgaagc agcggcgcaa
1451 acattggcat ggaagccaat ctgtagaaga gactcacaca ttagagcttt
1501 cataaaggtt gagaagctgg aatcagatgt caaggatccc gtaccgcgga
1551 ccattcagcc gcgctcaagg aggtacaact tgtgcctcgg acaatacctg
1601 cgcttgaacg agaaaaggtt cacccgcacc attgacctcg tgtttggcga
1651 ggctacggtg atgagtgggt atgacaatgt cacacaagcc aggtacttgc
1701 gaagcaaatg ggattcctat cctgatccag ttgctatagg tttggacgcc
1751 tctagatttg accagcattg cagtcccgag gccttggaat ttgaacactc
1801 attttacacc aaggttttca atgatcccac attagacgaa ctgctttcgt
1851 ggcagcgagt caacaaaggg actgctgtag ttatgaccgg tgaatgtctg
1901 aaatacgagg tgaacggttg caggatgagc ggtgatataa acactagtct
1951 gggcaataaa ctgctgatgt gcgccatggt gtggacctac ttgcaagcac
2001 atgatattga tgcaaaactc gctaataacg gcgacgactg cgtcctcttc
2051 tgctctgccg gtagtgttgc caagatcatg agcacattgc ctggttgttt
2101 tctgaactgg ggctacacta tggaagtgga agatcctgtg cgcattttcg
2151 agaggaccgt gttttgtcgg tcgcaacccg tgtgcgtaga tggcacgtgg
2201 gcaatgatcc gtcaactcgg gtctttgtca cgcgattgct tttccacaca
2251 cgactggtca aatgaaatga cgttcaggga caatatgaat gctataggac
2301 agtgtaatgg tattatcaac gacggagttc ctgtccacat ggagcaagca
2351 aaagcgatgt ggagggctgg cggcagtcgc aatttcaatg ttgaaacatt
2401 gcgtagccag attgagtaca gttggcgaga acggttgggg aatagagata
2451 ggctgctttg gagcccagtg gttccaagca cacgtttgtc ctacttcctt
2501 gctttcggca tcgaaccttg tgtgcaagag gcggttgagg catatctggc
2551 cagggtgtcc ctttcggccg ggggacaaac cttaccaggt ttgccgcgcc
2601 attactcacg cattcacaag gatttattac gatgtcgaac cgccaacttc
2651 ttcgccagtt aaacgccatg aaccttgggc aacccgctcc cgctcgcaga
2701 cgccgtaggc gtcagcaacc gagagtggtg gttgtccaac aggcgccccc
2751 gcccccccct aggaggcggc gacgcaacag gcgtaacacc tccgcacctg
2801 accgctacgt tgggctgggt ctcagtccag cagagaggag cttgttacgt
2851 ggaactcaaa actccaaagt catcatcacc gttgaagatt caactgaaca
2901 tattactgtc acctctgatc gcgtaggtca ggaacccatg ctacttggta
2951 aatggatgcg ttccaccttc gagagggcac gcgtcgccgc tatcgaaata
3001 cgcactcaaa gtgtcactcc taatggagag cctaatgacg attccgcagc
3051 tagatttgtc tggcagatgg gcagtcaaga cctcttctgt gagtggcacc
3101 atgagcatat agtggccaac actggcccga aagacgacga cgtgtggttc
3151 tttcaacctc ctgccgatgt ggcggcgctt gaggagcaca tagacacctc
3201 gcgcttggtg gttgaaggca ctttccagct tcacctgagg attcattatc
3251 gccaaccggc acagtttagg gtcggcaccc ttcacggtgg gtacacccgt
3301 gaccccaaca cgtggatgga taacgacaac aagaccatta cggccactgg
3351 ccggtgagac aaaccatacc aggtttgaag catggagacc tcacgtactt
3401 acaaccttga ggcgcacaag agcaaggact gcgaatgtga agtttccgtg
3451 tcgcaccact cgacgcacgc taagagtggg aagaaacaag cgagcaaacg
3501 tgcaagtggc agcaagtcat cccagacctc tgtttccacg aacactaaca
3551 ttgcatcacg gcgtcaacct ggcaaacaaa tggtcgttcc agatcatgat
3601 gccagccttg acgctgtcgt ccctcagctg gagactcttg agatttctca
3651 ggtcgcctct agggactcta accggcgccg tggttcacgc cgcagcgcca
3701 cgcccccgag tgacgacggc cttgatacct tcagcgacac cagatctgaa
3751 accagacaca ctgagggcaa ctgggcccag caccccaacg cgggcagctg
3801 gtcccagtta tcgctgaacg aacaacacta tgaggtggct acaggcactc
3851 ctgtcatgcc gcccaaccca gggcccaccc aaccccgcac tcgtttgccc
3901 aagacccaag ttcacgtgga cggggctggt gatgttgtca ccgcccctca
3951 cgctgattgg gacaggtacc aagcttatct tgatcgagtc aagcgggatt
4001 acggtggaat cgggtttgga aacagacccc tcgtcaagtc ggtgaatggg
4051 tatgcccaca tgcccaactc caccgacata ctcgggcaca gacacccaat
4101 gttcattgtc tggcagcaga tcaactgtta tggacatgtc gtcaagggat
4151 tagagaccat cgacggtatg tttggcatcg ggtggcactt tgacttagtc
4201 tttcgcaaca tgaaacgcat tcacgagtac cttgagggtg taggctgtgt
4251 gccttaccac aaactcaagg actttgctta gagccaacgg gcgctatcct
4301 cggcgcccta ataacctaag cgttggtaaa cgtgtggtca cgcatggtgg
4351 tacggctctt cggagatgcg tagcttgcag cgtacacctt ggctggttac
4401 ctaggtgtat ggcgatcacg tgaacccaac actaaaaatt aggctttgta
4451 gacctccagc gccagagtat aacggctaag cacccc