Sequence of DPV Red clover necrotic mosaic virus
Red clover necrotic mosaic virus genes for 27 kDa protein, 57 kDa protein, 36 kDa coat protein, 88 kDa protein, complete cds.
ACC No: AB034916
Dated: 2006-06-04 | Length: 3890 | CRC: -349797427
ID AB034916 standard; genomic RNA; VRL; 3890 BP.
XX
AC AB034916;
XX
SV AB034916.1
XX
DT 16-NOV-1999 (Rel. 61, Created)
DT 04-JUN-2006 (Rel. 88, Last updated, Version 5)
XX
DE Red clover necrotic mosaic virus genes for 27 kDa protein, 57 kDa protein,
DE 36 kDa coat protein, 88 kDa protein, complete cds.
XX
KW .
XX
OS Red clover necrotic mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Dianthovirus.
XX
RN [1]
RP 1-3890
RA Mizumoto H., Hikichi Y., Okuno T.;
RT ;
RL Submitted (10-NOV-1999) to the EMBL/GenBank/DDBJ databases.
RL Tetsuro Okuno, Kochi University, Laboratory of Plant Pathology and
RL Biotechnology; Monobe 200, Nankoku, Kochi 783-8502, Japan
RL (E-mail:okuno@cc.kochi-u.ac.jp, Tel:+81-888-864-5196, Fax:+81-888-864-5219)
XX
RN [2]
RA Mizumoto H., Hikichi Y., Okuno T.;
RT "Red clover necrotic mosaic virus Canadian strain (RCNMV-Can) RNA1";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3890
FT /organism="Red clover necrotic mosaic virus"
FT /segment="1"
FT /strain="RCNMV-Can"
FT /mol_type="genomic RNA"
FT /note="Canadian strain"
FT /db_xref="taxon:12267"
FT CDS join(124. .831,834. .2426)
FT /codon_start=1
FT /transl_table=1
FT /ribosomal_slippage
FT /product="88 kDa protein"
FT /note="-1 ribosome frameshifting"
FT /db_xref="GOA:Q9QMG1"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProtKB/TrEMBL:Q9QMG1"
FT /protein_id="BAA86872.1"
FT /translation="MGFVNFSLFDVDKLMVWVSKFNPGKILSAICNLGIDCWNRFRKWY
FT FGLNFDAHMWAVDAFMPLMPHYTEQMERVVGDLCSETLESKLEDCLELDTSVNQYFDEE
FT VYKEDDKGVMKLQRSAARKHIKRVRPGMMTAAIKAVETRIRNRHAIFGDNMGLIDEAAV
FT RATASDICGEFKINEHHTRTLVYTAAYLSMTPDQKSLDSVKLAYNPKSQARRTLVTAVR
FT ENKAVAGFKSLEDFGGPLSFPVEDAPYPILGIPEIRVAEKRASRVMRSKRVVGLPAVSA
FT GLKVCVHQTSLHNMIVSLERRVFRVKNAAGELVVPPKPIQNAFDSISYFREEWLRKLSH
FT KGQVLKSSIDDVVACYSSEKRKLYQKAADSLEKKPVQWRDSKVQAFIKVEKLECDTKDP
FT VPRTIQPRSKRYNLCIGQYLRLNEKKMLDSIDDVFKEKTVLSGLDNRAQGRAIAHKWRK
FT YQNPIGIGLDASRFDQHCSVDALKFEHTFYKACFPGDQQLEQLLKWQLSNTGSALLPTG
FT ELVRYRTKGCRMSGDINTGLGNKILMCSMVHAFLKEAGVRASLANNGDDCVLFCEKGDY
FT DEINRNLEQWFLCRGFEMTVEKPVDVLEKVAFCRSQPVCIATQWAMVRQLGSLSRDCFS
FT TQDWLNPKTFKDAMNALGQCNGIINDGVPIHMAQAKLMHKIGGNRKFNLDALHKQMEYS
FT WRDRLGKRTNLLWSEVEDATRLSYFKAFGIEPYIQKIVEEYFSQVEITCEGRSTNVLPA
FT HYSRIHKDLIKSR"
FT CDS 124. .834
FT /codon_start=1
FT /transl_table=1
FT /product="27 kDa protein"
FT /db_xref="UniProtKB/TrEMBL:Q9QMG0"
FT /protein_id="BAA86873.1"
FT /translation="MGFVNFSLFDVDKLMVWVSKFNPGKILSAICNLGIDCWNRFRKWY
FT FGLNFDAHMWAVDAFMPLMPHYTEQMERVVGDLCSETLESKLEDCLELDTSVNQYFDEE
FT VYKEDDKGVMKLQRSAARKHIKRVRPGMMTAAIKAVETRIRNRHAIFGDNMGLIDEAAV
FT RATASDICGEFKINEHHTRTLVYTAAYLSMTPDQKSLDSVKLAYNPKSQARRTLVTAVR
FT ENKAVAGFKSLEDF"
FT CDS 927. .2426
FT /codon_start=1
FT /transl_table=1
FT /product="57 kDa protein"
FT /db_xref="GOA:Q9QMF9"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProtKB/TrEMBL:Q9QMF9"
FT /protein_id="BAA86874.1"
FT /translation="MRSKRVVGLPAVSAGLKVCVHQTSLHNMIVSLERRVFRVKNAAGE
FT LVVPPKPIQNAFDSISYFREEWLRKLSHKGQVLKSSIDDVVACYSSEKRKLYQKAADSL
FT EKKPVQWRDSKVQAFIKVEKLECDTKDPVPRTIQPRSKRYNLCIGQYLRLNEKKMLDSI
FT DDVFKEKTVLSGLDNRAQGRAIAHKWRKYQNPIGIGLDASRFDQHCSVDALKFEHTFYK
FT ACFPGDQQLEQLLKWQLSNTGSALLPTGELVRYRTKGCRMSGDINTGLGNKILMCSMVH
FT AFLKEAGVRASLANNGDDCVLFCEKGDYDEINRNLEQWFLCRGFEMTVEKPVDVLEKVA
FT FCRSQPVCIATQWAMVRQLGSLSRDCFSTQDWLNPKTFKDAMNALGQCNGIINDGVPIH
FT MAQAKLMHKIGGNRKFNLDALHKQMEYSWRDRLGKRTNLLWSEVEDATRLSYFKAFGIE
FT PYIQKIVEEYFSQVEITCEGRSTNVLPAHYSRIHKDLIKSR"
FT CDS 2428. .3444
FT /codon_start=1
FT /transl_table=1
FT /product="36 kDa coat protein"
FT /db_xref="GOA:Q9QMF8"
FT /db_xref="HSSP:P11795"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:Q9QMF8"
FT /protein_id="BAA86875.1"
FT /translation="MSSKAPKKSKSRSQPRNRIPNTSIKTVAIPFAKTQIIKTVNPPQR
FT PAKALMHTQLVLSVVGTTQLRVNNGKSIQRFRLNPSNPALFPTIAYEAANYDMYRLKKM
FT TLRYVPIVTVQNSGRVSMVWDADSRDSAPQSRQETSAYSRSVSTAVYEKCSLTIPADNQ
FT WRFIADNTAVDRKLIDFGQLLFVTHSGSEGVEIGDVFFECEVEFKGPQPTATVIQKGVA
FT DVGGALSSEGPSYLMSSDLVVTPSGFGMNLDVAGTYLLTLVVAATASGNITVAGNSTLV
FT GEARAAYSSGNYIATLVFTSTGVLSATPSIQFTGSSGVTRVQLNLARCKPANTYVTG"
XX
SQ Sequence 3890 BP; 1120 A; 857 C; 955 G; 958 T; 0 other;
ab034916 Length: 3890 04-JUN-2006 Type: N Check: 4519 ..
1 gaacaaacgt tttaccggtt tgtaaattgg aattctcgaa ttcgccagtc
51 gccttcttcg tatcaaggat ctggaatttg aacggtatct ttatcatttt
101 aatttctact tttcgtacca gtcatgggtt ttgtcaactt ttcgcttttt
151 gatgtggaca aattgatggt atgggtgagc aaattcaatc caggcaagat
201 attgtccgct atttgcaact tgggtataga ctgctggaac cgttttcgca
251 aatggtactt cggtctcaac tttgatgcac atatgtgggc tgtcgatgcc
301 tttatgccac tcatgccaca ttacacggag cagatggaac gcgtagtcgg
351 cgacctctgc agcgaaaccc tagaatccaa attagaagac tgtctggaat
401 tggacacttc cgtcaaccag tattttgacg aagaagtgta caaagaggat
451 gacaagggcg tgatgaaact ccaaaggagt gctgccagga agcacattaa
501 acgtgtgcga ccaggtatga tgacagcagc cataaaagct gttgagacga
551 ggatcagaaa ccgccatgcc attttcggag ataacatggg attgatagac
601 gaagctgcag ttagagcaac tgccagtgat atctgtggag agttcaaaat
651 aaatgaacac cacacgagga cattggtata caccgcagca tatctttcca
701 tgacacctga ccagaagtcc ctagacagtg tcaagctcgc ctataatcca
751 aagagtcaag ccagaaggac tttagtgaca gccgttcgtg agaacaaagc
801 tgttgctggg ttcaaatccc ttgaggattt ttaggcggtc cactcagctt
851 tccggttgaa gatgccccat atcctatttt aggcatcccg gaaatcaggg
901 tagctgagaa gcgggccagt agagtcatga gaagtaagag agtcgtaggt
951 ttacctgctg ttagtgcggg tctaaaggtt tgcgtccatc aaacctccct
1001 acataatatg atagttagtc tcgaacgcag agtgttccgt gtaaagaacg
1051 ctgcgggaga gttagtagtg cctcccaaac caatccaaaa tgcatttgac
1101 tccatttcct acttccgcga agagtggttg aggaaattgt ctcataaggg
1151 tcaagtgctc aaatcctcca tagatgacgt tgttgcttgc tattcttctg
1201 aaaagaggaa attgtatcaa aaagcggctg actctctgga gaagaaacct
1251 gtccaatgga gagattccaa ggtgcaagca ttcatcaagg tagaaaaact
1301 tgaatgtgac actaaggatc ccgtgccccg cacgattcaa cctcgatcca
1351 agagatataa tctttgcata ggacaatatc tcaggttgaa tgaaaagaag
1401 atgttggatt ccatagacga tgtcttcaaa gagaagaccg tcttgtcagg
1451 tttggataac agggctcaag ggagagccat cgcccacaag tggcgcaaat
1501 accagaaccc catagggatc gggctagatg cgagtagatt cgatcagcat
1551 tgtagcgtgg atgccctcaa atttgaacac accttttata aagcgtgttt
1601 tcctggggat caacagttgg aacaactatt gaaatggcaa ttatccaaca
1651 ctggatcggc cctattacca actggagaac tggttagata ccgtaccaaa
1701 gggtgtcgca tgagcggcga tataaacaca ggccttggga acaagattct
1751 catgtgcagc atggtacacg cattcctgaa agaggcggga gtgcgggctt
1801 cgttagccaa taatggtgac gattgtgtcc ttttctgtga gaagggagac
1851 tatgatgaga taaaccgcaa tcttgagcaa tggttcctgt gcaggggttt
1901 cgaaatgacc gtcgaaaaac ctgtcgatgt actcgagaag gtggcgttct
1951 gtcgtagtca accagtttgc attgccacgc aatgggctat ggtaaggcaa
2001 ttgggaagtt tgtctagaga ctgtttttca acacaggatt ggttaaaccc
2051 aaagacattc aaagatgcaa tgaacgcgtt ggggcaatgt aacggaatca
2101 tcaatgatgg agttccaata catatggctc aggcgaaatt aatgcataaa
2151 atcggtggaa accggaagtt caatctagat gcactccaca agcaaatgga
2201 gtacagttgg agagatcgtc tcggtaaaag aacgaatctt ttgtggagtg
2251 aggtagagga tgctacgaga ttgtcatact ttaaagcatt cggcatagaa
2301 ccttacattc agaaaatagt ggaggagtac ttctcacaag tggaaatcac
2351 ttgtgagggg cgatcaacaa acgtattacc tgcacactat tctagaatcc
2401 acaaagattt aatcaaatcc cgatagtatg tcttcgaaag ctcccaagaa
2451 atccaaatca cggtcccagc ccaggaaccg gatcccaaac accagtatca
2501 aaactgtagc catcccattt gccaagacgc aaatcatcaa gaccgtgaac
2551 cctccacaaa ggccagctaa agctttaatg cacacccagc tggtactaag
2601 tgttgttgga acgactcaac tgcgtgtgaa caacggcaag tccattcaga
2651 ggttcagatt gaacccaagt aacccagctc tattccccac catagcctat
2701 gaagccgcaa attatgacat gtatcgtctg aagaaaatga cactccgtta
2751 tgtcccgatc gtgaccgtgc aaaattccgg acgcgtatca atggtttggg
2801 atgccgactc tcgggattcg gctccccaat cacgacagga gacatctgct
2851 tattctcgat ctgtctcgac tgccgtgtac gagaaatgct cgttgacgat
2901 tccggctgat aatcaatggc gattcatagc tgacaacaca gccgttgata
2951 gaaaactgat cgactttggc cagttgttgt ttgtcaccca ctccgggagt
3001 gagggagtag aaattggtga tgtgttcttc gagtgtgaag tagaatttaa
3051 aggaccccaa cccaccgcaa cagtcatcca gaagggtgta gctgacgttg
3101 gcggggcact ctcctcagaa ggaccgtctt acttaatgtc ctcggactta
3151 gtcgtcaccc cgtcgggttt cggtatgaac ttggatgtag cagggactta
3201 tctgctaacg ttggtggttg cagcaactgc tagcggaaac atcacagtag
3251 ccggcaattc aacattggtg ggtgaggcaa gggcagcata cagcagcggc
3301 aactacatcg ccactctggt atttactagt accggcgtct tgtcggcgac
3351 acctagtata cagtttacag gatcctccgg agttacacgg gttcaattga
3401 acctcgccag atgtaaaccg gcgaatacct acgtcactgg ttagttggtt
3451 aattggttag cgcagcctcc atccgagttg caagagagga agacgcagtc
3501 tcgccgaccc tgttggcaaa cagtaaaatt gcaaaaaata gagtgttagg
3551 agtagttccc atacccttgg ggacaagaac ctattatgga gaaacgaact
3601 ggcatcggac cctgggaaac aggcatctag cgtattaata ggtcgctaga
3651 agacgggcag gcttcaccac taggtaacct gccgccgaga gggaaaacct
3701 ctgtgtggtt gtgcgcacgt cgttgtcgga agaagttcac catagtagtt
3751 atttcctttt cttttaggta gaagcacttg ctccagaggg cgcatacctc
3801 tggttaaaca aaattgtccc ctgagagtag aaaactcagg ttaataaaac
3851 aggagaatat ttacctagtt gtataacggc taggtacccc