Sequence of DPV Ryegrass mottle virus
Ryegrass mottle virus genes for P1, protease and RNA-dependent RNA polymerase, hypothetical protein, coat protein, complete cds.
ACC No: AB040446
Dated: 2003-07-07 | Length: 4210 | CRC: 680247548
!!NA_SEQUENCE 1.0
ID AB040446 standard; RNA; VRL; 4210 BP.
XX
AC AB040446;
XX
SV AB040446.1
XX
DT 03-OCT-2000 (Rel. 65, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 5)
XX
DE Ryegrass mottle virus genes for P1, protease and RNA-dependent RNA
DE polymerase, hypothetical protein, coat protein, complete cds.
XX
KW coat protein; P1; protease and RNA-dependent RNA polymerase.
XX
OS Ryegrass mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN [1]
RP 1-4210
RA Zhang F.Y., Toriyama S.;
RT ;
RL Submitted (21-MAR-2000) to the EMBL/GenBank/DDBJ databases.
RL Shigemitsu Toriyama, Tokyo University of Agriculture, Faculty of Applied
RL Bioscience; Sakuragaoka 1, Setagaya-ku, Tokyo 156-8502, Japan
RL (E-mail:torico@ nodai.ac.jp, Tel:81-3-5477-2537, Fax:81-3-5477-2668)
XX
RN [2]
RA Zhang F.Y., Toriyama S., Takahashi M.;
RT "Complete Nucleotide Sequence of Ryegrass Mottle Virus: A New Species of
RT the Genus Sobemovirus";
RL J. Gen. Plant Pathol. 67:63-68(2001).
XX
DR GOA; Q9E962.
DR GOA; Q9E963.
DR GOA; Q9E964.
DR SPTREMBL; Q9E962; Q9E962.
DR SPTREMBL; Q9E963; Q9E963.
DR SPTREMBL; Q9E964; Q9E964.
DR SPTREMBL; Q9E965; Q9E965.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4210
FT /country="Japan"
FT /db_xref="taxon:119910"
FT /mol_type="genomic RNA"
FT /organism="Ryegrass mottle virus"
FT CDS 100. .501
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9E965"
FT /transl_table=1
FT /gene="ORF1"
FT /product="P1"
FT /protein_id="BAB15933.1"
FT /translation="MPSVVIEVCSYDEETGDCELESTSKIFTSNFDGTYVLYTHSSGPK
FT YAGSTVTLVCPHCGVSEQATFPTRGLSSNWGHHGPHDLRLDCKARHWHGTCEVIPSSEQ
FT ESRVASDGVFEPGLTHITTTRGQSWTRHH"
FT CDS 643. .3486
FT /codon_start=1
FT /db_xref="GOA:Q9E964"
FT /db_xref="SPTREMBL:Q9E964"
FT /transl_table=1
FT /gene="ORF2"
FT /product="protease and RNA-dependent RNA polymerase"
FT /protein_id="BAB15934.1"
FT /translation="MYGSIVSMVVQAALAFLLSKDPESRTAVRGLLASLTGTALILGWQ
FT LLCVLRAWLATSLEKEPEAPKDSWIDLCGPPRFDPSKGVYGEVLIDGKQHRVVIQPDFW
FT PLLRSAINIDRDEAAVANSIVSSVAPGKEPGSLVCIQAKDGKVIGMGARVHCGPATVLV
FT TAGHVLKKGMIADLYLAKYSVSSKEGKRVLMDPTWKIEYGSLNKEADVISVQVPAAVWS
FT RLGGPPPACGSLLLKYQSSPMVGRLPGSYNPRKVLRLQMAICLWPIHAQPVQGGAGTPL
FT YAGSDIVAIHRRWEDIGVKNLATNLSIFHANCESSENGEQGAREIDAEEWISREVTPTD
FT VYIAGRGKYRVAGDEFSHSSYDPLAFSKYKKERGEMTWADMVEGDLDWDAREESTGNDI
FT PLNCQQAASKCSSPCVTCPESSGVTEKSSPQQACPSLTVEDRVSNLEKLLERVLTSSAE
FT TQSNISVISQTLVGLKEARKQKELVCSSRQADSAPQKPPTTSTARAENLSENTPGPSSE
FT PAFGGETWNSESLKEKIQEIAQRDIKRDSSPGVPLSLIGTTNGAVLDSSMTLVVEAVWA
FT RLEALSRIELSPDVTPPELIQLGLCDPVRLFIKQEPHPLRKVRTGRLRLISSVSLLDQL
FT VERVLFGFQNNLEISRWKQCPSKPGMGLTSKEQSDALWDELKFKSTLAPAAEADISGFD
FT WSVQHWELMADVEMRIRLGDFSNLAARAARNRFTCLSNSVFQLSDGTLISQGLPGLMKS
FT GSYCTSSSNSRIRCLMAKIIGSRWCIAMGDDSVEGWVDNAVEKYHALGHECKEYSACAR
FT TYVSGSGEQTLQTVNFCSHELSEGKCHLTTWSKTLFRFFHSTAPCIRSLEMELAGSPQW
FT PKIYRYLRRVGLAPDKDGKEEGQIGQPSNRFEGEIPEETTEKQRPTTHQTGYTGFSAGR
FT DGDPDYLSGTPSCNSVW"
FT CDS 1890. .2423
FT /codon_start=1
FT /db_xref="GOA:Q9E963"
FT /db_xref="SPTREMBL:Q9E963"
FT /transl_table=1
FT /gene="ORF3"
FT /product="hypothetical protein"
FT /protein_id="BAB15935.1"
FT /translation="MSGIVWSDGEILTTTGMPLIDCGRSRVKFRETARTSTNELCRNAE
FT QHFGDLADLSWPERGSKAERVSLLFQAGRFRPTEAPDNLDSACRELEREYPRSKQRACL
FT WGGNLELRKPQRKDPRNRAKGHQAGLQSRGPPQLDWNYKWGSPGLLHDLGCGGCLGATR
FT GPFPNRTKPRCDSS"
FT CDS 3305. .4012
FT /codon_start=1
FT /db_xref="GOA:Q9E962"
FT /db_xref="SPTREMBL:Q9E962"
FT /transl_table=1
FT /gene="ORF4"
FT /product="coat protein"
FT /protein_id="BAB15936.1"
FT /translation="MARKKGKSASQVIVLKEKSRKKRQKSRGQQPTRQVTPVSAPAAMG
FT TQITYRGPQVVTQYGDITPAKNSGSLVRVTSSATAGTEVSGTVLFNVRNATELPWLSGQ
FT GSRYSKYRVRYAHFTWEPIVGSNTNGEVAMAMLYDVADVTSITIERLMQTRGGTWGPIW
FT SPTRKRLSYDPEHASLPWYLSGVSSGAAAGNIQTPFQIAWAAQSSLVSTTLGRIMAEYL
FT VELTDPVDVTINQ"
XX
SQ Sequence 4210 BP; 1024 A; 1061 C; 1192 G; 933 T; 0 other;
AB040446 Length: 4210 July 15, 2003 09:12 Type: N Check: 2192 ..
1 acaaatagag ttattaaatt aactctattg aacccgttat ccggtgatat
51 aggacatctg tgaactaaca tcacaataat cagttagccc cctcgattta
101 tgccttcagt ggttatcgag gtttgctcat acgacgagga gacaggagat
151 tgtgaacttg agagtacgtc gaagatattc accagtaact tcgacgggac
201 ttacgtccta tatactcaca gttccgggcc gaaatacgcc ggatcaactg
251 tcacactcgt ctgccctcac tgcggggtga gtgaacaagc gacgttcccg
301 accagaggcc tttcaagcaa ctggggtcac cacgggccgc acgacttacg
351 acttgattgt aaggcgcggc actggcacgg aacgtgcgag gtcattccct
401 cctctgagca agagtcgcgt gtagcgtctg acggggtttt cgaaccaggt
451 ctaacgcaca tcaccacgac tcgagggcag tcttggacta gacatcatta
501 gtccctccca gttctcgctg ggagtcccgc agcctggcta cgggaaatat
551 cggtggggtt gatcagacct acacctcttc gagaaaagcg ctcttcgagt
601 actccctcgg cagactattc tgttgcgtct cccatagtga agatgtacgg
651 gtcaatagta agcatggtgg ttcaggcggc gctcgctttc ctactgtcca
701 aggacccaga gtccaggact gcggtgagag ggctgctagc atcactaacg
751 gggacggctc tgatcctggg gtggcaactg ctgtgcgtct tgcgcgcttg
801 gctagcaacc tctctggaaa aggaaccgga agctccgaaa gactcctgga
851 ttgatctgtg tggtccgcca cgctttgatc catcgaaagg agtttatgga
901 gaggtgctca tcgatgggaa gcagcatcgg gttgtgatcc aacccgattt
951 ctggcctctt ttacggtctg cgataaatat agatcgtgat gaggctgctg
1001 tggctaattc catcgtctct tcggtggcac cggggaaaga gccaggctct
1051 ctagtttgca tccaagcaaa ggatggcaaa gtgattggga tgggggctcg
1101 agtccactgc ggacccgcca ctgtcctcgt caccgccggt catgttctga
1151 agaagggcat gattgcagac ttatacctgg cgaagtactc tgtgtcgagt
1201 aaagagggaa agcgtgtcct gatggacccg acctggaaga ttgaatacgg
1251 ctccctgaac aaggaggctg atgtgatatc ggtacaggtc cccgcggctg
1301 tgtggtctcg ccttggtgga ccgccgcccg cgtgcggaag cctactgtta
1351 aagtaccagt cctcgcctat ggtggggagg cttccgggct cctacaatcc
1401 tcgcaaggtt ttgcgactcc agatggcaat atgtctgtgg cccattcatg
1451 ctcaacccgt ccagggtgga gcggggacac ccctgtacgc agggtcagac
1501 attgttgcca ttcaccgaag atgggaggat ataggcgtca agaatttggc
1551 gacgaacctc tccattttcc atgcaaactg tgaatccagt gaaaacggag
1601 agcagggagc gcgcgagatc gacgctgagg aatggatatc tcgagaggta
1651 actccgacgg acgtgtacat tgcaggccga gggaaataca gagttgctgg
1701 agatgaattc tcccactcaa gttatgatcc tctggctttc tctaagtaca
1751 agaaggagag aggtgagatg acgtgggctg atatggtgga aggcgatctt
1801 gattgggacg cccgtgaaga atccacagga aatgatattc ctttaaactg
1851 ccagcaggcg gcgagcaagt gctcgtcgcc gtgcgtgaca tgtccggaat
1901 cgtctggagt gacggagaaa tcctcaccac aacaggcatg cccctcattg
1951 actgtggaag atcgcgtgtc aaatttagag aaactgctag aacgagtact
2001 aacgagctct gccgaaacgc agagcaacat ttcggtgatc tcgcagacct
2051 tagttggcct gaaagaggct cgaaagcaga aagagttagt ttgctcttcc
2101 aggcaggcag attccgcccc acagaagccc ccgacaacct cgacagcgcg
2151 tgccgagaac ttgagcgaga atacccccgg tccaagcagc gagcctgcct
2201 ttggggggga aacttggaac tcagaaagcc tcaaagaaaa gatccaagaa
2251 atcgcgcaaa gggacatcaa gcgggactcc agtccagggg tccccctcag
2301 cttgattgga actacaaatg gggcagtcct ggactcctcc atgaccttgg
2351 ttgtggaggc tgtctgggcg cgactcgagg ccctttcccg aatagaacta
2401 agccccgatg tgactcctcc tgagttgata caactaggtc tttgcgaccc
2451 agtgcgtctc ttcataaaac aggagcccca tccactcagg aaagttcgga
2501 ctggcaggtt gaggctgatt tcatcggtat ccctgttgga ccaactggtt
2551 gagagggttc ttttcggttt tcagaataac ctcgagataa gccgatggaa
2601 gcagtgtcca tcgaaacccg gaatgggtct cacttctaag gagcaatccg
2651 atgcgttgtg ggacgagctg aagttcaagt ccaccctagc ccccgcggct
2701 gaggcggaca tatcgggatt cgattggtca gtgcaacatt gggagctaat
2751 ggcggatgtc gaaatgagaa ttcgactcgg agacttcagc aaccttgctg
2801 caagggctgc taggaacagg tttacttgtt tgtcgaactc ggttttccaa
2851 ctgagtgatg gcaccctgat ttctcaggga ctaccaggcc taatgaagtc
2901 cgggtcttat tgcacttcga gctcaaattc acggataaga tgcctaatgg
2951 cgaagatcat cggctcacga tggtgtatag ccatgggtga tgattccgtg
3001 gagggttggg ttgacaatgc tgtagaaaag tatcatgcac ttggtcatga
3051 gtgtaaagaa tactcagcat gcgcccggac atacgtgagc gggagcggag
3101 aacaaaccct tcaaacggtt aatttctgct cgcacgagtt gtccgagggt
3151 aagtgtcatc ttacgacctg gagcaaaacg cttttccgat tcttccatag
3201 tacggctccg tgcattagga gtctggaaat ggaattagcg ggcagccccc
3251 agtggcccaa aatctatcgg tacctgcgtc gggtgggctt agcgcccgac
3301 aaagatggca aggaagaagg gcaaatcggc cagccaagta atcgttttga
3351 aggagaaatc ccggaagaaa cgacagaaaa gcagaggcca acaacccacc
3401 agacaggtta caccggtttc agcgccggcc gcgatgggga cccagattac
3451 ttatcgggga ccccaagttg taactcagta tggtgacatc acccccgcca
3501 agaactctgg ctctttagta cgcgtcacat ccagtgccac cgccggcacg
3551 gaggtgagcg gcacggtgct ctttaacgta cgcaatgcga ctgagctacc
3601 gtggctatct gggcaagggt cccgctattc gaagtacagg gtgaggtatg
3651 cacacttcac ctgggaacca attgtgggat ccaacaccaa tggcgaggta
3701 gccatggcta tgctgtatga tgttgctgat gtgactagca tcactatcga
3751 gcgactgatg cagacgagag gtggaacttg gggacctatc tggtctccga
3801 ctaggaagcg gctcagttat gaccctgagc acgcttctct accttggtac
3851 ctaagtggag tctcctcagg cgccgcggca ggtaatatcc agactccctt
3901 ccagatagct tgggctgccc aatcttcatt ggttagcaca acgctaggca
3951 gaataatggc tgagtacttg gtggagttga ccgatccggt tgatgtcaca
4001 atcaaccagt gagacctgag ctcaaggtta acgagcgacc cttgggctgg
4051 gggtatataa atacgcaatg ccacttcggt gacaggcgcc gggcagccgc
4101 ctacatgggg gttaatccag agtccctgaa gactataaac tcgaagtccc
4151 agatgactct aaactcgtga actgtcggca cacctagcgt aggggcccgg
4201 gggttttcgt