Sequence of DPV Cocksfoot mottle virus
Cocksfoot mottle virus genes for P1, protease, RNA-dependent RNA polymerase, coat protein, complete cds.
ACC No: AB040447
Dated: 2003-07-07 | Length: 4083 | CRC: -2093577467
!!NA_SEQUENCE 1.0
ID AB040447 standard; RNA; VRL; 4083 BP.
XX
AC AB040447;
XX
SV AB040447.1
XX
DT 03-OCT-2000 (Rel. 65, Created)
DT 07-JUL-2003 (Rel. 76, Last updated, Version 3)
XX
DE Cocksfoot mottle virus genes for P1, protease, RNA-dependent RNA
DE polymerase, coat protein, complete cds.
XX
KW coat protein; P1; protease; RNA-dependent RNA polymerase.
XX
OS Cocksfoot mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN [1]
RP 1-4083
RA Zhang F.Y., Toriyama S.;
RT ;
RL Submitted (21-MAR-2000) to the EMBL/GenBank/DDBJ databases.
RL Shigemitsu Toriyama, Tokyo University of Agriculture, Faculty of Applied
RL Bioscience; Sakuragaoka 1, Setagaya-ku, Tokyo 156-8502, Japan
RL (E-mail:torico@ nodai.ac.jp, Tel:81-3-5477-2537, Fax:81-3-5477-2668)
XX
RN [2]
RA Zhang F.Y., Toriyama S.;
RT "Nucleotide sequence and genome organization of cocksfoot mottle
RT virus/Japanese isolate";
RL Unpublished.
XX
DR GOA; Q9E958.
DR GOA; Q9E959.
DR GOA; Q9E960.
DR SPTREMBL; Q9E958; Q9E958.
DR SPTREMBL; Q9E959; Q9E959.
DR SPTREMBL; Q9E960; Q9E960.
DR SPTREMBL; Q9E961; Q9E961.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4083
FT /country="Japan"
FT /db_xref="taxon:40979"
FT /mol_type="genomic RNA"
FT /organism="Cocksfoot mottle virus"
FT CDS 71. .397
FT /codon_start=1
FT /db_xref="SPTREMBL:Q9E961"
FT /transl_table=1
FT /gene="ORF1"
FT /product="P1"
FT /protein_id="BAB15937.1"
FT /translation="MCEPPPGFITVQCYTSDDLLTGDSTIVKSIPVRSCFFRQGVEVVL
FT FRCESNKHRWSKIRGPVNLTVHCDICEFRETVEIPSLPKGFKVSSDFSYSVTWNCCYSR
FT GRTE"
FT CDS 430. .2136
FT /codon_start=1
FT /db_xref="GOA:Q9E960"
FT /db_xref="SPTREMBL:Q9E960"
FT /transl_table=1
FT /gene="ORF2a"
FT /product="protease"
FT /protein_id="BAB15938.1"
FT /translation="MGCSVVGNCKSVMLMSRMSWSKLALLISVAMAAAMTDSPPTLICM
FT GILVSVVLNWIVCAVCEEASELILGVSLEATRPSPARVIGEPVFDPRYGYVAPAIYDGK
FT SFDVILPISALSSASTRKETVEMAVENSRLQPLESSQTPKSLVALYSQDLLSGWGSRIK
FT GPDGQEYLLTALHVWETNISHLCKDGKKVPISGCPIVASSADSDLDFVLVSVPKNAWSV
FT LGVGVARLELLKRRTVVTVYGGLDSKTTYCATGVAELENPFRIVTKVTTTGGWSGSPLY
FT HKDAIVGLHLGARPSAGVNRACNVAMAFRVVRKFVTVENSELYPDQSSGPARELDAETY
FT TERLEQGVAFTEYNISGITVKTSDREWTTTEALRVARYKPLGGGKAWGDSDDEDTQETA
FT IRPLNYQRAGSLRGSPPLANLSSTRATSGVTKESSIPAACLSDPLESRVAGLEKLCAER
FT FTEMFELLRQSSQNSKSSPGQAADQKQKSDRSSSKPAGLRESKRPSICNWQSLTSKPST
FT RGPDPAPASAESPGVVRTSSQKSKRSRTRGKSTSKQVPASPSPKSGSATSK"
FT CDS 1743. .3257
FT /codon_start=1
FT /db_xref="GOA:Q9E959"
FT /db_xref="SPTREMBL:Q9E959"
FT /transl_table=1
FT /gene="ORF2b"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="BAB15939.1"
FT /translation="MPFRSAGKSSCRFREAVCRAVHRDVRAAETEFPELKELAWPSRGS
FT KAEIGSLLFQAGRFERVEAPVNLQLAITNLQAQYPRSRPRSCFRREPWCREDFVAEIEK
FT IAHSGEINLKASPGVPLAEIGVSNQQVIDVAWPLVCEAVVERLHALASVDPRHDDWSPE
FT ELVKRGLCDPVRLFVKQEPHSRQKIEQGRFRLISSVSLVDQLVERMLFGPQNTTEIALW
FT HSNPSKPGMGLSKASQVALLWEDLARTNQTHPGAMADISGFDWSVQDWELWADVSMRIE
FT LGSFPALMAKAAISRFYCLMNATFQLTNGELLTQELPGLMKSGSYCTSSSNSRIRCLMA
FT ELIGSPWCIAMGDDSVEGWVDDAPRKYSALGHLCKEYEACPVLPDGDLKEVSFCSHLIS
FT KGRAELETWPKCLFRYLSGPHDVESLEMELSSSRRWGQIVRYLRRIGRVSENDGEERSS
FT SESPATTKTQGSAAAWGPPQEAWPVDGASLSTFEPSSSGWFHLEGW"
FT CDS 3097. .3858
FT /codon_start=1
FT /db_xref="GOA:Q9E958"
FT /db_xref="SPTREMBL:Q9E958"
FT /transl_table=1
FT /gene="ORF4"
FT /product="coat protein"
FT /protein_id="BAB15940.1"
FT /translation="MVRKGAAAKAPQQPKPKAQQQPGGRRRRRGRSMEPVSRPLNPPAA
FT VGSTLKAGRGRTAGVSDWFDTGMITSYLGGFQRTAGTTDSQVFIVSPAALDRVGTIAKA
FT YALWRPKHWEIVYLPRCSTQTDGSIEMGFLLDYADSVPTNTRTMASSTSFTTSNVWGGG
FT DGSSLLHTSMKSMGNAVTSALPCDEFSNKWFKLSWSTPEESENAHLTDTYVPARFVVRS
FT DFPVVTADQPGHLWLRSRILLKGSVSPSTNL"
XX
SQ Sequence 4083 BP; 929 A; 1041 C; 1143 G; 970 T; 0 other;
AB040447 Length: 4083 July 15, 2003 09:12 Type: N Check: 8369 ..
1 gataatagtg cgaagaaaga cacactgtta tcgtttcccc tcccgaatca
51 gaggttgaga agtagcttag atgtgcgaac ctccccctgg ttttataacc
101 gttcagtgct acactagcga cgatttgttg acaggcgatt ctacgatcgt
151 caagtccatt cccgtccgct cgtgcttctt ccgccaaggc gtcgaagttg
201 ttctgttccg gtgtgagtct aacaaacatc gctggtcgaa gatcagaggt
251 cctgtgaact taacagttca ttgtgatatc tgtgaattcc gcgagactgt
301 tgagattcca tctctgccca aaggctttaa agtatcgagc gatttctctt
351 acagtgtaac gtggaattgc tgctacagcc gtggcaggac agagtagcac
401 agaggttagt tggttgaggg tgaccaagaa tgggttgttc tgttgttgga
451 aactgcaagt ccgtgatgtt gatgagcagg atgagctggt caaagctagc
501 tctcctcata tccgtcgcaa tggcggcagc catgacagac tccccaccca
551 ctctgatatg tatggggatc ctagtgagcg tggtgctcaa ctggatcgtc
601 tgcgcagtat gcgaagaagc ttcagagcta attctgggcg tttccttgga
651 agcgactcgt cctagtcccg cacgggttat aggagagccg gtctttgacc
701 cccggtacgg ctatgtcgct cctgctatct atgatggcaa atcgttcgat
751 gtgatcctgc ccatttccgc tctgtcctcc gcttcaacaa ggaaggagac
801 agtggagatg gcagttgaga actcacgact acagcctcta gagagcagtc
851 aaacgccgaa gtccctagtg gctttgtact cgcaagacct gctatcaggt
901 tggggttctc ggattaaagg ccctgatggc caggaatatc ttttgacagc
951 cctgcatgtg tgggagacca acatctctca cctgtgtaag gatggaaaga
1001 aggtaccgat aagcggatgc ccaatcgttg cgagctctgc tgactcggac
1051 ttggactttg tccttgtgtc cgtgccgaag aacgcttggt ctgttttagg
1101 cgtcggtgtg gctcgtttgg aattgctcaa acgccggacc gtcgtaacag
1151 tctatggagg cctagactca aagaccacct actgtgccac tggtgtggcg
1201 gagttggaaa accccttccg catagtcacg aaagtgacga caacgggagg
1251 gtggtcaggc tctccactct accacaagga cgcgatcgtc gggttgcact
1301 tgggtgcgag accatctgcg ggggtcaata gagcgtgtaa cgtagctatg
1351 gccttcaggg ttgtgcggaa atttgtcact gtcgagaaca gtgagttata
1401 tcccgaccaa agcagtggcc ccgcccgaga gctcgatgct gagacgtata
1451 cggaaaggtt ggagcaagga gttgctttca ctgagtacaa tatatctggc
1501 attacggtga aaacctccga ccgagagtgg actacaactg aggcgttgcg
1551 tgtcgcaaga tacaaaccct tgggtggagg aaaagcatgg ggtgatagtg
1601 atgacgagga cacccaggaa actgcaatcc ggcctttaaa ctaccagcgg
1651 gcgggctccc tacggggcag tccgcccttg gccaacttat cgagtacgcg
1701 ggctacgtct ggcgtgacga aggaatcatc aattccagcg gcatgccttt
1751 ccgatccgct ggaaagtcga gttgccggtt tagagaagct gtgtgcagag
1801 cggttcacag agatgttcga gctgctgaga cagagttccc agaactcaaa
1851 gagctcgcct ggccaagccg cggatcaaaa gcagaaatcg gatcgctcct
1901 cttccaagcc ggcaggtttg agagagtcga agcgcccgtc aatctgcaat
1951 tggcaatcac taacctccaa gcccagtacc cgaggtccag accccgctcc
2001 tgcttccgca gagagccctg gtgtcgtgag gacttcgtcg cagaaatcga
2051 aaagatcgcg cactcggggg aaatcaacct caaagcaagt cccggcgtcc
2101 ccctcgccga aatcggggtc agcaaccagc aagtaattga cgtggcctgg
2151 cccttggtgt gtgaggctgt ggtggaaagg ctccatgcct tggcatccgt
2201 agacccgcgc cacgacgact ggtctccaga agaactcgtg aaaagaggat
2251 tgtgtgatcc agtgcgactt ttcgtcaaac aggaacctca ttctcggcag
2301 aagattgaac aaggtcgctt ccgacttatc tcttccgtct cactcgtaga
2351 tcaactggta gaacgcatgc ttttcggacc ccagaatact acagaaattg
2401 ctctgtggca ttcaaatccc tctaaacccg ggatgggtct gtcgaaagct
2451 agccaagtcg cgctgttatg ggaggatttg gcgcgtacga accagaccca
2501 cccgggtgcc atggctgaca tctcagggtt tgactggtcc gttcaggatt
2551 gggaactctg ggctgacgta tctatgagga ttgagctagg ctcgtttcca
2601 gcgttgatgg cgaaggcagc tatatcgcgg ttttactgct tgatgaatgc
2651 taccttccaa ttaacgaatg gagagctctt gacccaggaa ctgcccggtc
2701 tcatgaagtc cgggtcgtac tgtacctcca gctccaactc ccgcattcgc
2751 tgccttatgg ctgagctcat cggctcgcct tggtgtatcg caatgggaga
2801 tgattctgtt gagggttggg ttgatgacgc tcccaggaaa tattcagcac
2851 taggccatct ctgcaaagag tatgaagcgt gtccggtgct ccccgatgga
2901 gatttgaagg aggtgagctt ttgctcccat ctcatctcta agggtcgagc
2951 agagctggag acgtggccca agtgtctgtt tcgatatctc agtggaccac
3001 atgatgtgga aagcttggag atggagctaa gctcttctcg ccgctggggc
3051 cagatcgtca gatacctccg ccggattggc cgggtctccg aaaatgatgg
3101 tgaggaaagg agcagcagcg aaagccccgc aacaaccaaa acccaaggct
3151 cagcagcagc ctgggggccg ccgcaggagg cgtggccggt cgatggagcc
3201 agtctctcga cctttgaacc ctccagcagc ggttggttcc accttgaagg
3251 ctggtagagg caggactgct ggtgtgagtg actggtttga caccggcatg
3301 atcaccagtt acctaggtgg ttttcagcgc acagctggaa ctaccgactc
3351 ccaggtattc attgtgtcac ctgctgcatt ggaccgtgtt ggaaccatag
3401 ctaaggcgta cgcgttgtgg agacctaagc attgggaaat cgtgtatctc
3451 cccagatgtt ctactcagac agatgggtcg attgaaatgg gatttctctt
3501 agattatgca gatagcgtcc caaccaacac ccgaactatg gcctcctcta
3551 cctccttcac gacttcaaac gtgtggggag gcggagatgg cagcagtttg
3601 ttgcacacgt ccatgaagtc catgggcaac gctgttacga gtgctcttcc
3651 ttgtgatgag ttctcgaaca agtggtttaa gttatcttgg agcactcctg
3701 aggaatcgga gaacgcccat ttgactgata cctatgttcc ggcgcgcttc
3751 gtggtgaggt ctgacttccc ggtagtcaca gctgaccaac ctggtcatct
3801 ttggctccgg tccaggatct tactcaaggg atcggtttcc ccttctacaa
3851 atttgtagtt aagtaccgca gggatgacaa acctgtatag cagtgtccgc
3901 gcttggtgga gtcgcgctcg tccacttgga aatctaactc caaagctttg
3951 cttgaagatt gacggattgg tattatctcc gtaagtatac cgaccactgg
4001 ctgggctcgt cacccctcct ttgtgtctca caaacgacga atctgcgctc
4051 ggcaaatgac aggatcatgg ccggggcagg tgc