Sequence of DPV Honeysuckle yellow vein virus
Tobacco leaf curl Kochi virus-[KK] DNA, complete genome, isolate: TLCV-KK.
ACC No: AB055009
Dated: 2009-01-13 | Length: 2760 | CRC: 624424235
ID AB055009; SV 1; linear; genomic DNA; STD; VRL; 2760 BP.
XX
AC AB055009;
XX
DT 22-MAR-2002 (Rel. 71, Created)
DT 13-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE Tobacco leaf curl Kochi virus-[KK] DNA, complete genome, isolate: TLCV-KK.
XX
KW .
XX
OS Tobacco leaf curl Kochi virus-[KK]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2760
RA Kitamura K., Ikegami M.;
RT ;
RL Submitted (25-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Masato Ikegami Tokyo University of Agriculture, Depertment of
RL Biosience, Faculty of Applied Biosience; 1-1-1 Sakuragaoka, Setagaya-ku,
RL Tokyo 156-8502, Japan
XX
RN [2]
RA Kitamura K., Murayama A., Ikegami M.;
RT "Evidence for recombination among isolates of Tobacco leaf curl Japan virus
RT and Honeysuckle yellow vein mosaic virus";
RL Arch. Virol. 149:1221-1229(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2760
FT /organism="Tobacco leaf curl Kochi virus-[KK]"
FT /host="Lycopersicon esculentum"
FT /strain="Kochi"
FT /isolate="TLCV-KK"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:223335"
FT CDS 137. .478
FT /codon_start=1
FT /transl_table=1
FT /gene="V2"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q8QXC1"
FT /protein_id="BAB86386.1"
FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTVGYDLLRDL
FT IGVIRAKSYVEASCRYRDFHSRLQGTAPSELRQPVCQPCECPHCPRHKQKEIMGSKAHV
FT SEAQDVQNV"
FT CDS 297. .1070
FT /codon_start=1
FT /transl_table=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:Q8QXC0"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q8QXC0"
FT /protein_id="BAB86387.1"
FT /translation="MSKRPADIGIFTPVSKVRRRLNFDSPYANRASVPIALATNKRRSW
FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEKKNDVGHSGTLLCVSDITRGNGLTH
FT RVGKRFCIKSVYIIGKIWMDENIKTKNHTNNVLFWLVRDRRSGSTPYGFQEAFNMFENE
FT PSTATVKQELRDRLQVLHRFSATVTGGQYASKEQAIIKRFWKLNHHVTYNHQEQAKYEN
FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN"
FT CDS complement(1067. .1471)
FT /codon_start=1
FT /transl_table=1
FT /gene="C3"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q8QXB9"
FT /protein_id="BAB86388.1"
FT /translation="MDSRTGATITAAQAWNGAYIWTVPNPLYFKITSHAQRPFNMEQDI
FT ITIQIQFNHNLRNQLEIHKCFLCFKIWTHLHPQTSHFLRVFKTQVLKYLDNLGVISINN
FT VIRAVDHVLYNVLEKTEYVQSSHDIKFKLY"
FT CDS complement(1212. .1619)
FT /codon_start=1
FT /transl_table=1
FT /gene="C2"
FT /db_xref="GOA:Q8QXB8"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q8QXB8"
FT /protein_id="BAB86389.1"
FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRQPRRRRIDINCGCSIYVAL
FT GCANHGFTHRGHHHCSSGMEWRVYLDSAKSPIFQNHEPRPTTIQHGTRHNNYTNTIQPQ
FT PQESTGDTQVLPLFQDLDSLTSSDFAFLEGI"
FT CDS complement(1519. .2607)
FT /codon_start=1
FT /transl_table=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q8QXB7"
FT /db_xref="HSSP:P27260"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q8QXB7"
FT /protein_id="BAB86390.1"
FT /translation="MAPPKRFRINSKNYFVTYPHCSLTKEEALTQIKALETPTNKLFIR
FT ICRELHEDGSPHLHILIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDIIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALCILREKAPKDFVLQFH
FT NLNSNLDRIFAPPLEEFISPFLSSSFDQVPEQLEEWAAENVRDSARPWRPMSIVIEGDS
FT RTGKTMWARSLSPRHNYLCGHLDLSPKIYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLDEDKNAALKAWAIKNATFVTLYGPL
FT YSGTHQGATQIREEETTTQEED"
FT CDS complement(2157. .2450)
FT /codon_start=1
FT /transl_table=1
FT /gene="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q8QXB6"
FT /protein_id="BAB86391.1"
FT /translation="MGALISTSSSNSRGNTNAQINDSSTSYPQPGQHISIQTFRELKAL
FT QMSRPTWKKTGTSLILEFSKSMEDRLEEVASLPTTHMPRQSTQDLSHRHSVY"
XX
SQ Sequence 2760 BP; 727 A; 546 C; 629 G; 858 T; 0 other;
ab055009 Length: 2760 13-JAN-2009 Type: N Check: 4254 ..
1 accggatggc cgcccgaaat ttcgtggtgg tccccccctg tcggccaatg
51 agatttgtgc cttgaatgct atataagtgg atgttgacat caccttttgt
101 ctttatatac gtcagcccta attttaaagg gtaaagatgt gggatccttt
151 acttaacgat ttccctgaaa ccgttcacgg ttttcgttgt atgctagcgg
201 ttaaatatct tctacttgtt gaggctacat actctccgga tacggtaggt
251 tacgatttgc ttcgtgatct cataggtgtg attcgtgcga agagctatgt
301 cgaagcgtcc tgcagatata gggattttca ctcccgtctc caaggtacgg
351 cgccgtctga acttcgacag cccgtatgcc aaccgtgcga gtgtccccat
401 tgccctcgcc acaaacaaaa ggagatcatg ggctcaaagg cccatgtatc
451 ggaagcccag gatgtacaga atgtatagaa gtcctgatgt gcctaagggg
501 tgtgaaggtc catgtaaggt ccagtcgtat gagaagaaaa atgatgttgg
551 tcattctggt actttgctct gtgtctctga tatcacccgt ggtaatgggc
601 ttactcatcg tgttgggaag agattttgta taaaatctgt ttatattatt
651 ggtaaaatat ggatggatga aaatattaag accaagaatc acactaacaa
701 cgtgttgttt tggttagtta gagatagacg ttctggttca acgccttatg
751 gatttcaaga ggcattcaat atgtttgaga atgaacccag tactgccact
801 gttaaacaag aattaagaga tcgcttgcag gttctacata ggttcagtgc
851 aactgtaact ggtggacagt atgcgtctaa ggaacaagca atcatcaaga
901 ggttctggaa gctgaatcat catgtcactt acaatcatca agagcaggct
951 aaatatgaga atcatactga aaatgctttg ttattgtata tggcttgtac
1001 acatgccagt aatccagtgt atgctacatt aaaaatcaga gtgtatttct
1051 acgattcagt acaaaattaa taaagcttga attttatatc atgagatgat
1101 tgtacatact ctgttttctc taatacatta tacaatacat gatcaactgc
1151 cctaattaca ttgttaattg aaattacacc caaattatct aaatacttca
1201 acacttgtgt cttaaatacc ctcaagaaat gcgaagtctg aggatgtaag
1251 tgagtccaaa tcttgaaaca gaggaagcac ttgtgtatct ccagttgatt
1301 cctgaggttg tggttgaatt gtatttgtat agttattatg tcttgttcca
1351 tgttgaatgg tcgttgggcg tggctcgtga ttttgaaata taggggattt
1401 ggcactgtcc agatatacgc gccattccat gcctgagctg cagtgatggt
1451 ggcccctgtg cgtgaatcca tgatttgcac agcctaatgc gacgtagata
1501 gaacacccgc agtttatgtc aatcctcctc ctgcgtggtt gtctcctctt
1551 ctctgatctg tgtcgcacct tgatgggtac ctgagtagag tgggccgtag
1601 agggtgacga aggttgcatt tttaattgcc caggccttta gggcagcatt
1651 cttgtcctcg tctaaatact cggtgtatga tgacgttggg cctggattgc
1701 agaggaagat tgttgggata ccacctttaa tttgaattgg tttcccgtac
1751 ttggtgttgc tttgccagtc cctctgggcc cccatgaatt ccttaaagtg
1801 ctttaggtag tggggatcca cgtcatcaat gacgttgtac caggcctcgt
1851 tgctgtaaat cttggggctt aagtcaagat ggccgcaaag gtaattatga
1901 cgtggactaa gagatctggc ccacatagtt ttccctgtcc tgctatcacc
1951 ctctatcaca atactcatgg gcctccatgg ccgcgcagaa tccctgacgt
2001 tctcggcagc ccattcctca agttgctccg gaacttgatc aaaagaagac
2051 gataaaaaag gagaaataaa ttcctccaac ggaggagcaa aaatcctatc
2101 taaattacta tttaaattat gaaattgtaa aacaaaatct ttgggagctt
2151 tctcccttaa tatacagagt gccgatgact tagatcctga gttgattgcc
2201 tcggcatatg cgtcgttggc agactggcaa cctcctctag ccgatcttcc
2251 atcgatttgg aaaactccaa aatcaatgat gtccccgtct ttttccatgt
2301 aggtcttgac atctgaagag cttttagctc cctgaatgtt tggatggaaa
2351 tgtgctgacc tggttgggga tacgaggtcg aagaatcgtt gatttgtgca
2401 ttggtatttc ccctcgaatt ggatgaggat gtggagatga gggctcccat
2451 cttcgtgaag ctctctgcaa attctgatga ataatttatt tgttggagtt
2501 tctagggctt taatttgggt aagagcttcc tctttagtga gcgagcagtg
2551 tgggtatgta acgaaataat ttttgctgtt tattctaaaa cgtttcggtg
2601 gagccatatt tacaaatatg cccttgtaca ccgattggga gagaaaacct
2651 ttgtgctatg aatcggtgta ttggtgtaca ttatatagtc ctctatcttt
2701 ttaattttga attttaaaat tcaaaattca aattggtaaa gcggccatcc
2751 gtataatatt