Sequence of DPV Tulip virus X
Tulip virus X genomic RNA, complete genome.
ACC No: AB066288
Dated: 2007-12-15 | Length: 6056 | CRC: 832561629
ID AB066288; SV 1; linear; genomic RNA; STD; VRL; 6056 BP.
XX
AC AB066288;
XX
DT 28-SEP-2002 (Rel. 73, Created)
DT 15-DEC-2007 (Rel. 94, Last updated, Version 5)
XX
DE Tulip virus X genomic RNA, complete genome.
XX
KW .
XX
OS Tulip virus X
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6056
RA Namba S., Yamaji Y.;
RT ;
RL Submitted (18-JUL-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shigetou Namba The University of Tokyo, Graduate School of
RL Agricultural and Life Sciences, Department of Agricultural and
RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi,
RL Bunkyo-ku, Tokyo 113-8657, Japan
XX
RN [2]
RA Yamaji Y., Kagiwada S., Nakabayashi H., Ugaki M., Namba S.;
RT "Complete nucleotide sequence of Tulip virus X (TVX-J): borderline between
RT species and strains within the genus Potexvirus";
RL Arch. Virol. 107:833-837(2001).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6056
FT /organism="Tulip virus X"
FT /strain="J"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:167132"
FT CDS 96. .4181
FT /codon_start=1
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:Q8BF56"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="InterPro:IPR001788"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:Q8BF56"
FT /protein_id="BAC16785.1"
FT /translation="MSNLRNVFAQLTDPSLKAVIQDEAYRVMKKELTATRHSNPFAQSP
FT AAADTLELLGINSHPLAITPHTHAAAKAIESDLYEVTSHYLPKENPVTFLFMKPSKLRY
FT FHRGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSFITSLF
FT ARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQL
FT QWLTAGYLISESTTVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLP
FT SSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNY
FT FDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVL
FT LEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAACANQSLPLDNLSEDQLEALHV
FT LGSLRTDGESLPSPPKAPLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTPLPDPD
FT TLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVV
FT ITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLG
FT LSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERA
FT FVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLE
FT PATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVK
FT KAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNA
FT QSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLI
FT QDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEA
FT NLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGG
FT ERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRR
FT YRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKA
FT KFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDH
FT VAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLI
FT KDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSPEQAHLHQ
FT VTVRDLTKFGGSPFLNSD"
FT CDS 4183. .4875
FT /codon_start=1
FT /transl_table=1
FT /gene="tgb1"
FT /standard_name="triple gene block1"
FT /db_xref="GOA:Q8BF55"
FT /db_xref="InterPro:IPR000606"
FT /db_xref="UniProtKB/TrEMBL:Q8BF55"
FT /protein_id="BAC16786.1"
FT /translation="METILTALEKAGFTRTKLPLSKPLVIHAVAGAGKTTLIQSLLAEH
FT PNLSAQTAGVPQNPTLDGAYIRKLTIPESNKLNILDEYAALHPLKGSWDVVCADPLQHP
FT NTALRPHFLKTTSHRLCPATTGLISKLICPCSSSRPEPTKITVTGLFESPLFGTIISLD
FT DTCHKLLQAHGLQPHCPESVLGLEFPVVTVVSSLPLHEIVEKHRLYISLSRHTQELHVR
FT CPPPHPTH"
FT CDS 4841. .5170
FT /codon_start=1
FT /transl_table=1
FT /gene="tgb2"
FT /standard_name="triple gene block2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q8BF54"
FT /protein_id="BAC16787.1"
FT /translation="MSGAHHLTPPTNLGKPVLAVSVGLSLALLAYTATRSTLPHVGDTT
FT HSLPHGGRYVDGTKRIDYFRPHSPNSNPTYPFILLTILILSGLILLLSRRGPAPARCPC
FT CQRPH"
FT CDS 5007. .5291
FT /codon_start=1
FT /transl_table=1
FT /gene="tgb3"
FT /standard_name="triple gene block3"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q8BF53"
FT /protein_id="BAC16788.1"
FT /translation="MEPNASTTSDHTPRTPIRPIPSSSSQSSSYPDSFYFCLAAVLLLL
FT AVLAANALTNHHPCTVHINGHSTTLTGNCVITPELLTSLHPKLLSFQTP"
FT CDS 5303. .5926
FT /codon_start=1
FT /transl_table=1
FT /gene="cp"
FT /product="coat protein"
FT /db_xref="GOA:Q8BF52"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q8BF52"
FT /protein_id="BAC16789.1"
FT /translation="MALNTAPNPEALAAMTLEVSSPAVPTPAELDTIAAGLTTLGVPAD
FT SLISHALALVNACFDAGSSQFTTISGPSPTPTITLAQLAGVVKVSTTLRKFCRFYAKLI
FT WNARLSRNRPPAGFARAYVKTGQKWAGFDFFDGLLNPAALEPLGGLTREPTPDEITANE
FT TARSLGLFESRANSNNLATTSTQFTRGQLSNTSPTVQFLPSPED"
XX
SQ Sequence 6056 BP; 1502 A; 2233 C; 1226 G; 1093 T; 2 other;
ab066288 Length: 6056 15-DEC-2007 Type: N Check: 9858 ..
1 gaaaatcaac caacccagaa aacaccaaac caaactcaaa tagacatact
51 cggccgtaaa aggttaccaa tttgctaaga agctaggtaa acgacatgtc
101 gaacttgaga aacgttttcg cccagctcac agacccctca ctcaaggccg
151 tcattcaaga cgaggcctac cgagtgatga agaaagagct taccgccacc
201 agacattcta accccttcgc acagagcccc gcggccgcag acaccctcga
251 actactaggt attaattcac acccacttgc cataacccca cacacccacg
301 ccgccgccaa ggctatcgag tcagacttgt acgaggtcac ctcccactac
351 cttcccaagg aaaaccctgt cacattcctg ttcatgaagc cctccaagct
401 gagatacttc cacagagggc cccagcacag tgacatcttc ctcaacgcct
451 acatcgaacc caaggatgtc ccccgctacc ccacggacac cgtcatcgaa
501 aacatctcag agatcacaac acccctagcg tttatgggag acacactgca
551 ctttctcgaa ccctctttca taaccagcct cttcgcacgc tccccaaaac
601 tgcagaccct ttacgccaca atggtgttgc cccccgaagc gctctataga
651 ctacgcagcc tctacccaga ggtctacacg cttacctact ccgacgatgg
701 attcatgtat atccccgggg gccatgccgg cgcttcatac taccacaagt
751 acgaccagct ccaatggctc accgccggct atctcatctc agagagcacc
801 actgtcactg cccaacggct agaaacaaag ggcgccaacc acctcttcat
851 cttccagagg ggccgctacc tcacccccga acgcaggacg ttcaccaccg
901 ccacctctta tgtgactgtg cccgagattt tcctaccctc cagcgccaac
951 gcccgcacac ccatcaccaa gactctggct atgcaaatct tcttctacat
1001 caagtccgtg aaggagtgtc gggaacgcga tctctgggcc aagttcagac
1051 aactgatcag cacaaaagag ctccaacact tccagccaga cgaggccaca
1101 ctactggtga actacttcga cttcgtcgcc aacctcgact ctgccacctg
1151 ccatgaggac atcctctccg gaagcctcct cacgcgactg cttcgcccgg
1201 ccagagttaa ctggcaagcc ttagtcaggt tcttcaaggg cagcccagac
1251 cacacgaaac tgatcaaggc tcttcagtgg caacccgtgc tgctggagtt
1301 caaagtgtcc accgtcctcg tccacaaaag gacgccgcca gggtttcgac
1351 accccctgtg ccgacccctg cccgtcaatg aggtggacgc gctcaccacc
1401 gccgcttgcg ccaaccaaag tctacctctc gacaaccttt cggaggacca
1451 gttggaggca ctgcatgtgc tgggctcctt acgcaccgac ggcgaatcgc
1501 tccccagccc gcctaaagct cctctggaga ccgggcccca cccgacaccc
1551 accatttccg cggcaggacc caccaaaact gtgccgactc ctaacgtcga
1601 agtgtccgcc aaccccctga ctggaacgcc cctcccagac cccgacaccc
1651 tcccctggaa ggcgtggttg cctcacctac gtgccctagg ctttgaagct
1701 tccgagattc agaccgaccc cagagaccac tcaaccatca tgcccatcac
1751 tgatatccag acgctcccac acgagacctt cgatgagtat gactccacct
1801 caagcccatt tgacaaggtt gtgataactc ttaagcaact caacagaagc
1851 cccacaccct ggacccccga ccgactgaga gcccgcgcct atgcctcgga
1901 catcaagaat tcccgcaccg ggaaagcact acacaaggag agccagaact
1951 ggaaagaaac ccaaacccgg ctcactgaaa cgtcggagac gcgactcggg
2001 ctctccgtca tccacggcgc gggaggctcc gggaaaagtc aggcccttca
2051 aaccatgctc cgcaatcacc ccgaccttcc agtcgaagtt gtgctgccta
2101 ccaacgaact ccgcrtagac tggctgcgta agctaccgca caaccccccg
2151 gaacaattcc gcactttcga gcgggccttc gtttcctcca cagcccccgt
2201 ggttatcttc gacgactatg gcaaactccc acagggtttc ctcgaagctt
2251 tcgcgctctg ccgccccggg ctgaaacttg ccatcctcac cggagacccc
2301 aggcagtcca cccaccacga atccaacgag caggcaatga tagcgcagtt
2351 ggaacccgcc acaaaaatct tcagcgccct ctgtaggtac tacatcaatg
2401 ccacccatag gaacgtgaaa gaactggcca acaagcttgg ggtgtattcc
2451 tcaaaccctt ccccactcca cgtatcctat gggtttcgac ctgaacccgg
2501 actacacctc ctcgtcccat cattggtgaa gaaagcggcg ttcgccgacg
2551 ccgggcacaa agtttccaca tatgccgggt gtcaaggcat cacagcgccc
2601 aaagttcaaa tcctcctcga cagcgacacc accatgtgct cttccgaggt
2651 cctctacaca gccctctccc gcgccgtgga ctccatccac ttcatcaact
2701 cgaacgcaca gtccagcgcc ttctgggaaa aactggaagc cacgccctac
2751 ctgaagacct tcctctccct ggtcagagag cacaagctgg aagagttcac
2801 tgctgtggag gacccaccac aagaggtagc gccccccgtg actcacttcc
2851 ccgtggaaaa cgcgtcacac acgttgggcc tcatccagga ctccctggcc
2901 gacaagtacg acagagaaat cctcaacacc aaccacggct tcaccaactg
2951 cgtccaaacc gaggatctca ccgtccaact cttctcccac cagcaagcca
3001 aagacgaagc cctcctgtgg gagaccatcg acgcccgctt acggctctcc
3051 accccagaag ctaacctggc tgagttccac gccaagaagg acctcggcga
3101 tgtcctctgg gaaaactacc accgggctat gaaactcccg aaagagcagc
3151 cagatttctc gccagaactg tgggagaggt gcgccgccga agtgcagcaa
3201 acgtatcttt ccaagtccct ccaacagatc aaaggaggtg aaaggcggca
3251 gtccccagat ttccccgaga acaagatcct catcttcctc aaatctcagt
3301 gggtgaagaa gatggaaaaa ctaggcgcgc ccaaaatcaa gccgggccaa
3351 accatcgcct ctttccaaca agcggcagtc atgctctatg gcaccatggc
3401 cagatacatg cggaggtaca gggatgccct cggccccaac aacatcatga
3451 ttaactgtga gaggactccc gcggacctga gtcgctgggt tcgcaaccat
3501 tgggacttca ccaagccctm ctacgccaac gacttcaccg ccttcgacca
3551 gtcacaagat ggagccatgc tgcagttcga gatcctcaaa gccaagttct
3601 tcaacctccc cgagtgggtc atagaggggt acttggacat caaactcaca
3651 ccccagatct tcaccggtac gctcgcaatc atgcggctca ccggcgaagg
3701 gcccaccttc gatgccaaca ctgagtgcaa tatcgcttac acgcacaccc
3751 gcttccacat cccggaccac gtcgcccaac tctacgctgg cgacgattgc
3801 gccattgccg aagtgtgtca ggaaaaaccc tccttcgcac tcctcaaaaa
3851 ccgcatcgcc ctgcaagcca aacccgccta tgcaccacag acgcgaggtg
3901 cctgggcgga attctgcggc tacctgatca cccctaaagg ccttatcaaa
3951 gatcccctaa agcttcacag ctccctagag ttggccaaag ccctacgtaa
4001 acaagggcgc aaggacgcca taaccaacgt cgtggcgaat tacagcctgg
4051 atgctaaaat ggcctactcc ttaggggacg atctccaaga cctcctctcc
4101 cctgaacaag cacacctcca ccaagttacg gttcgtgact tgactaagtt
4151 tggaggttca cctttcctca actccgatta gaatggaaac catacttaca
4201 gccttagaga aagccgggtt cacacgtacc aaactccctc tctccaaacc
4251 gttagttatc cacgccgtag ctggcgccgg gaaaaccaca ctaattcaaa
4301 gcctactcgc agaacacccc aacctgtccg cccaaaccgc aggcgttccc
4351 caaaacccaa cccttgacgg cgcctacatt agaaagctaa ccatccccga
4401 gtctaacaaa ctaaacatct tagacgagta cgcggcactc caccccctta
4451 aggggtcctg ggacgttgtc tgcgcggacc ctctccagca ccccaacacc
4501 gcactaaggc cccacttcct caagaccacc agccacaggc tctgcccagc
4551 cacgaccgga ctgatttcca aactcatctg cccctgcagc tcctcccgcc
4601 cggaaccgac aaaaataaca gtgactggcc tgtttgaaag ccccctcttc
4651 ggcaccatta tctccttgga cgacacctgc cacaagctac tacaagccca
4701 cggcctccaa ccccattgcc cagagagtgt cctgggccta gagttccctg
4751 ttgtcaccgt cgtctccagc ctacccctac acgagatcgt ggaaaaacac
4801 cgcctgtaca tcagcctctc acgacacaca caagagctcc atgtccggtg
4851 cccaccacct caccccaccc actaacctag gaaagccggt cttagcagtc
4901 tccgtcggcc tctccctcgc actcctcgcc tacaccgcca ctagatccac
4951 tctcccacac gtgggtgaca ccacccactc gctcccccac ggcggtcgct
5001 acgttgatgg aaccaaacgc atcgactact tccgaccaca ctccccgaac
5051 tccaatccga cctatccctt catcctcctc acaatcctca tcctatccgg
5101 actcattcta cttctgtctc gccgcggtcc tgctcctgct cgctgtcctt
5151 gctgccaacg ccctcactaa ccaccacccc tgcacggttc acatcaacgg
5201 tcactcaaca accctgacag gcaactgcgt cataacgccc gaacttctaa
5251 caagccttca ccctaaactg ttaagtttcc aaacaccttg aactaactaa
5301 ccatggccct caacaccgca ccaaaccccg aagccctagc cgccatgacc
5351 ctagaagtta gctctcccgc cgttcccaca cccgcagaac tcgacacaat
5401 cgccgctggc ctcaccaccc tcggagttcc cgcggactcc cttatctccc
5451 acgcccttgc cctcgtcaac gcttgcttcg acgcaggttc ctcacagttc
5501 acaaccatca gcggccccag ccccaccccc accattaccc tcgcccagct
5551 agcaggcgtc gtcaaagtct caaccactct ccgaaaattc tgccgcttct
5601 acgccaagct tatctggaac gcacgtctca gccgcaaccg gccgcccgca
5651 gggttcgctc gcgcctacgt caaaaccggc caaaagtggg ccggtttcga
5701 cttcttcgac ggcctcctca acccggccgc cctagagccc ctcggcggcc
5751 tcacccgtga acccaccccc gacgaaataa cagccaacga aaccgcgcgc
5801 tcccttggcc tcttcgaatc aagagctaac tctaacaacc tggccaccac
5851 gtccacccag ttcacccgtg gccagctctc taacacctcc cccacagtcc
5901 agttcctccc aagcccggag gattaaaccc tacagctgcg aacccaggaa
5951 cagctataaa aagtcctggt cttaccaaac ctaaccatct cgcaccccgg
6001 cgtacctttt gccctttaaa taaaagccct acaaccagtg aaagtctggt
6051 ggggcc