Sequence of DPV Soybean dwarf virus
Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein, strain:YS, isolate:HN94-1.
ACC No: AB076040
Dated: 2009-04-24 | Length: 1911 | CRC: 394672617
ID AB076040; SV 1; linear; genomic RNA; STD; VRL; 1911 BP.
XX
AC AB076040;
XX
DT 07-JAN-2003 (Rel. 74, Created)
DT 24-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein,
DE strain:YS, isolate:HN94-1.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-1911
RA Terauchi H., Kanematsu S., Hidaka S.;
RT ;
RL Submitted (12-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Seiji Kanematsu National Agricultural Research Center for Tohoku
RL region, Laboratory of Plant Disease Management; 4-Akahira,
RL Shimo-Kuriyagawa, Morioka, Iwate 020-0198, Japan
XX
RN [2]
RA Terauchi H., Honda K., Yamagishi N., Kanematsu S., Ishiguro K., Hidaka S.;
RT "The N-Terminal Region of the Readthrough Domain Is Closely Related to
RT Aphid Vector Specificity of Soybean dwarf virus";
RL Phytopathology 93:1560-1564(2003).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1911
FT /organism="Soybean dwarf virus"
FT /strain="YS"
FT /isolate="HN94-1"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12049"
FT CDS <1. .254
FT /codon_start=3
FT /transl_table=1
FT /gene="ORF3"
FT /product="coat protein"
FT /db_xref="GOA:Q8B6M1"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8B6M1"
FT /protein_id="BAC54070.1"
FT /translation="STSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGL
FT EWHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK"
FT CDS <255. .1820
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF5"
FT /product="readthrough protein"
FT /note="This protein is translated by in-frame readthrough
FT of the ORF3 stop codon."
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8B6M0"
FT /protein_id="BAC54071.1"
FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLVSAR
FT QSSDSISLYSIRSQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS
FT CEGYQAVSSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLT
FT INGDKFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME
FT FGMVSVVLDEHLEGARSSQYVRKSPRSGHVGVNRSHRLQDNFVPTEYVSDEDSNSSSSI
FT VSNRPSTPDNDSDAQFAESIKGKLPSQTKLPPKGFLSRLSVKEKEEISNSKPSNVEGLV
FT GPLVAAYGYPSQTGVYDAAREILQAKEAAENLAELERDLKEINKLEPPDVIVQEEIPDF
FT VPPSEKTLKEDDPYYVPPIWQNADQAVLVSTYEPPDWSRPAYESGDPLKKTGTLKGTLS
FT KSGGSLRSGESSLRGSLRKTQDQTDLDNKLSKLSVIQRSQYQRILNNLGKTRARAYIDG
FT LDLD"
XX
SQ Sequence 1911 BP; 583 A; 414 C; 444 G; 470 T; 0 other;
ab076040 Length: 1911 24-APR-2009 Type: N Check: 7398 ..
1 cttccacctc gtcaggctcc atcgcttatg agcttgaccc acactgcaag
51 tactccgaaa ttcaatcgct actcaataaa ttcagtatca caaagagcgg
101 ttcgaaacgt ttcccaacca gagctatcaa tggcctcgaa tggcatgata
151 ccagtgaaga tcaattcaag atccactata aggggaacgg agagtccaag
201 atcgcaggct ccttcaagat ctcgatcaat gtcttaacgc agaatgctaa
251 ataggtagac ggagaaccgg gtccgaaacc aggtccagac ccagcacccc
301 agccaacacc aacacccgaa cctacgccag ccaaacacga gagatttatc
351 gcgtacaccg gtacgttgtc cacgcttgtt agcgcgcgac agtcttctga
401 cagtatctca ctctattcca tccggagtca gaggattaga tacatcgaag
451 atgaaaattc cagttggaca aacatagatg caaaatggta ctcgcagaat
501 tctgttgagg ccattccaat gtttgtttat ccagtgcccg aaggtacttg
551 gtcaattgaa atatcttgtg aaggttacca ggcagtgtca agtacatcag
601 acccccatcg tggaaaatgc gatggcatga ttgcttatga cgacgattct
651 tcgaaggtgt ggaatgttgg tcagcagaat aacgtaacca ttaccaataa
701 taaggccgat aatgattgga aatatggtca ccctgatctc acgatcaatg
751 gtgacaaatt cgatcaaaat caagtagtcg agaaagatgg aatcatttca
801 ttccatttag taactactgg cccaaacgca agtttctttc tcgtcgctcc
851 agctgttaag aaaacagcta aatacaactt ttgtgtgtca tatggagatt
901 ggacggatag agatatggag tttggaatgg tatcagtagt gctcgatgag
951 cacttggagg gagcaaggag ttctcagtat gttaggaaat cgccaagatc
1001 aggtcatgtt ggcgtcaatc gttctcaccg attgcaagac aatttcgtac
1051 cgacggaata tgtcagtgat gaagatagta atagtagtag tagtatagtt
1101 agtaatcgac catcaactcc ggataatgat agtgacgccc aatttgctga
1151 atctataaaa ggtaagcttc cgtctcagac gaagctcccg cctaaagggt
1201 tcctatcacg gttaagtgta aaagagaaag aagaaatctc taattctaaa
1251 ccttcgaatg tcgaaggtct ggttggtcct cttgttgcag cttatggata
1301 cccatctcaa acaggtgttt atgacgcagc aagagagata ctgcaagcta
1351 aagaagctgc agaaaacctg gcagaattag aaagggactt aaaggagatt
1401 aacaagcttg aaccgccgga tgtaattgtt caggaagaaa tccctgactt
1451 tgtgccgcca tcggagaaga cattaaagga agatgatcct tactatgtac
1501 ctccgatttg gcagaatgcc gaccaggctg tattggtctc aacttatgag
1551 cctccagact ggagtcggcc agcttatgag tcaggcgacc cacttaagaa
1601 gacaggaaca ctcaaaggta ctctctccaa atcagggggt tctttaagga
1651 gtggtgaatc gtctcttaga ggtagcctcc gcaagacgca agatcaaact
1701 gatctagata acaagttatc caaactcagt gttatccaga gatcccagta
1751 tcagaggatt ctcaataacc tggggaaaac gcgtgcgcga gcatatatcg
1801 atggtttaga tttagattaa tataatagaa gtaagtgtgc gctttccatc
1851 acattaggtc ggagccaacc ttggtgagtt gctgtcgtgg gatcctggga
1901 aacaggttcg g