Sequence of DPV Soybean dwarf virus
Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein, strain:YS, isolate:IK00-1.
ACC No: AB076041
Dated: 2009-04-24 | Length: 1969 | CRC: 438140032
ID AB076041; SV 1; linear; genomic RNA; STD; VRL; 1969 BP.
XX
AC AB076041;
XX
DT 07-JAN-2003 (Rel. 74, Created)
DT 24-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein,
DE strain:YS, isolate:IK00-1.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-1969
RA Terauchi H., Kanematsu S., Hidaka S.;
RT ;
RL Submitted (12-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Seiji Kanematsu National Agricultural Research Center for Tohoku
RL region, Laboratory of Plant Disease Management; 4-Akahira,
RL Shimo-Kuriyagawa, Morioka, Iwate 020-0198, Japan
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RN [2]
RA Terauchi H., Honda K., Yamagishi N., Kanematsu S., Ishiguro K., Hidaka S.;
RT "The N-Terminal Region of the Readthrough Domain Is Closely Related to
RT Aphid Vector Specificity of Soybean dwarf virus";
RL Phytopathology 93:1560-1564(2003).
XX
DR RFAM; RF00434; BTE.
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FH Key Location/Qualifiers
FH
FT source 1. .1969
FT /organism="Soybean dwarf virus"
FT /strain="YS"
FT /isolate="IK00-1"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12049"
FT CDS <1. .254
FT /codon_start=3
FT /transl_table=1
FT /gene="ORF3"
FT /product="coat protein"
FT /db_xref="GOA:Q8B6L9"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8B6L9"
FT /protein_id="BAC54072.1"
FT /translation="STSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTRAINGL
FT EWHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK"
FT CDS <255. .1820
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF5"
FT /product="readthrough protein"
FT /note="This protein is translated by in-frame readthrough
FT of the ORF3 stop codon."
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8B6L8"
FT /protein_id="BAC54073.1"
FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLISAR
FT QSSDSISLYSIRSQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS
FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLT
FT INGDRFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME
FT FGMVSVVLDEHLEGARSSQYVRKTPRSGHVGVNRSHRLQDNFVPTEYVSDEDSSSNSSI
FT VSNRPSTPDNDSDAQFAESMKGKLPSQTKLPPKGFLSRLSTKEKKEISNSKPSNVEGLV
FT GPLVVAYGYPSQTGVYDAAREILQAKEAAENLAELERDLKEINKLEPPDVIVQEEIPDF
FT VPPSEKILKEDDPDYVPPIWQNADQAVLVSSYEPPDWSRPAYGSGDPPKKTGTLKGTLS
FT KLGGSLRSGESSLRGSLRKTQDQTDLDNKLSKLSVIQRSRYQRILNNLGKMRARAYIDG
FT LDLD"
XX
SQ Sequence 1969 BP; 601 A; 434 C; 460 G; 474 T; 0 other;
ab076041 Length: 1969 24-APR-2009 Type: N Check: 2612 ..
1 cttccacctc gtcaggctcc atcgcttatg agcttgaccc acactgcaag
51 tactccgaaa ttcaatcgct actcaataaa ttcagtatca caaagagcgg
101 ttcgaaacgt ttcccaacca gagctatcaa tggcctcgaa tggcatgata
151 ccagtgaaga tcaattcaag atccactata aggggaacgg agagtccaag
201 atcgcaggct ccttcaagat ctcgatcaat gtcttaacac agaatgctaa
251 ataggtagac ggagaaccgg gtccgaaacc aggtccagac ccagcacccc
301 agccaacacc aacacccgaa ccaacgccag ccaaacacga gagatttatc
351 gcgtacaccg gtacgttgtc cacgcttatt agcgcgcgac agtcttctga
401 cagtatctca ctctactcca ttcggagtca gagaattaga tacatcgaag
451 atgaaaattc cagttggaca aacatagatg caaaatggta ctcgcagaat
501 tctgttgagg ccattccaat gtttgtttat ccagtgcccg aaggtacttg
551 gtcaattgaa atatcttgtg aaggttacca ggcagcgtca agtacatcag
601 acccccatcg tggaaaatgc gatggcatga ttgcttacga cgacgattct
651 tcgaaggtgt ggaatgttgg tcagcagaat aacgtgacca ttaccaataa
701 taaggccgat aatgattgga aatatggtca ccctgatctc acgatcaatg
751 gtgacagatt cgatcagaat caagtagtcg agaaagatgg aatcatttca
801 ttccatttag taactactgg cccaaacgca agtttctttc tcgtcgctcc
851 agctgttaag aaaacagcta aatacaactt ttgtgtatca tacggagatt
901 ggacggatag agatatggag tttggaatgg tatcagtagt gctcgatgag
951 cacttggaag gtgcaaggag ttctcagtat gttaggaaaa cgccaagatc
1001 aggtcatgtt ggcgtcaatc gttctcaccg attgcaagac aatttcgtac
1051 cgacggaata tgtcagtgat gaagatagta gtagtaatag tagtatagtt
1101 agcaatcgac catcaactcc ggacaatgat agtgacgccc aatttgctga
1151 atctatgaaa ggtaagcttc cgtctcagac gaagctcccg cctaaagggt
1201 tcctatcacg gttaagcaca aaagagaaaa aagaaatctc caattctaaa
1251 ccctcgaatg tcgaaggtct ggttggtcct cttgttgtag cttatggata
1301 cccatctcaa acgggtgttt atgacgcagc aagagagata ctgcaagcta
1351 aagaagctgc agaaaacctg gcagaattag aaagggactt aaaggagatt
1401 aacaagcttg aaccaccgga tgtaattgtt caggaagaaa tccctgactt
1451 tgtgccgcca tcggagaaga tactaaagga agatgatcct gactatgtac
1501 ctccgatttg gcagaatgcc gaccaggctg tattggtctc aagttatgag
1551 cctccagact ggagtcggcc agcttatggg tcaggtgacc cacctaagaa
1601 gacaggaaca ctaaaaggta ctctctccaa attagggggt tccttaagga
1651 gtggtgaatc gtctcttaga ggtagcctcc gcaagacgca agatcaaact
1701 gatctagata acaagttatc caaactcagt gttatccaga gatcccggta
1751 ccagaggatt ctcaataacc tgggtaaaat gcgtgcgcga gcatatattg
1801 atggtttaga tttagattag tataatagaa gtaagtgtgc gctttccatc
1851 acattaggtc ggagccaacc ttggtgagtt gctgtcgtgg gatcctggga
1901 aacaggttcg gtgaacaaaa gccggtaatc tcgggcgttc gtcagacgcc
1951 gtcgtatcaa cacagtatg