Sequence of DPV Soybean dwarf virus
Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein, strain:YS, isolate:II00-2.
ACC No: AB076044
Dated: 2009-04-24 | Length: 1972 | CRC: 479224097
ID AB076044; SV 1; linear; genomic RNA; STD; VRL; 1972 BP.
XX
AC AB076044;
XX
DT 07-JAN-2003 (Rel. 74, Created)
DT 24-APR-2009 (Rel. 100, Last updated, Version 3)
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DE Soybean dwarf virus ORF3, ORF5 genes for coat protein, readthrough protein,
DE strain:YS, isolate:II00-2.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-1972
RA Terauchi H., Kanematsu S., Hidaka S.;
RT ;
RL Submitted (12-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL Contact:Seiji Kanematsu National Agricultural Research Center for Tohoku
RL region, Laboratory of Plant Disease Management; 4-Akahira,
RL Shimo-Kuriyagawa, Morioka, Iwate 020-0198, Japan
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RN [2]
RA Terauchi H., Honda K., Yamagishi N., Kanematsu S., Ishiguro K., Hidaka S.;
RT "The N-Terminal Region of the Readthrough Domain Is Closely Related to
RT Aphid Vector Specificity of Soybean dwarf virus";
RL Phytopathology 93:1560-1564(2003).
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FH Key Location/Qualifiers
FH
FT source 1. .1972
FT /organism="Soybean dwarf virus"
FT /strain="YS"
FT /isolate="II00-2"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12049"
FT CDS <1. .254
FT /codon_start=3
FT /transl_table=1
FT /gene="ORF3"
FT /product="coat protein"
FT /db_xref="GOA:Q8B6L3"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q8B6L3"
FT /protein_id="BAC54078.1"
FT /translation="STSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPIRAINGL
FT EWHDTSEDQFKIHYKGNGESKIAGSFKISINVLTQNAK"
FT CDS <255. .1823
FT /codon_start=1
FT /transl_table=1
FT /gene="ORF5"
FT /product="readthrough protein"
FT /note="This protein is translated by in-frame readthrough
FT of the ORF3 stop codon."
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:Q8B6L2"
FT /protein_id="BAC54079.1"
FT /translation="VDGEPGPKPGPDPAPQPTPTPEPTPAKHERFIAYTGTLSTLISAR
FT QSSDSISLYSIRSQRIRYIEDENSSWTNIDAKWYSQNSVEAIPMFVYPVPEGTWSIEIS
FT CEGYQAASSTSDPHRGKCDGMIAYDDDSSKVWNVGQQNNVTITNNKADNDWKYGHPDLT
FT INGDKFDQNQVVEKDGIISFHLVTTGPNASFFLVAPAVKKTAKYNFCVSYGDWTDRDME
FT FGMVSVVLDEHLEGARSSQYVRKTPRSGHVGVNRSHRLQDSSTPVEYVSDEDSSSSNSS
FT IVSNRPSAPDNDSEAQFAESLKGKLPTQSKLPPKGFLSRLSAREKEEISSSKPSNVDRQ
FT VGPLVAAYGYPSQTGVYDAAREILRAKEAAENLAELERDLKEINKLEPPDVIVQEEIPD
FT FVPPSEKILKEDDPDYVSPIWQNADQAVLVSSYEPRDWSRPTYESGDPPKKAGTLKGTL
FT SKLGGSLRSGESSLRGSLRKTQDQTDLDNKLSKLSVVQRSQYQRILNSMGKTRARAYID
FT GLDLA"
XX
SQ Sequence 1972 BP; 588 A; 434 C; 472 G; 478 T; 0 other;
ab076044 Length: 1972 24-APR-2009 Type: N Check: 4553 ..
1 cttccacctc gtcaggctcc atcgcttatg agcttgaccc acactgcaag
51 tactccgaaa ttcaatcgct actcaacaag ttcagtatca caaagagcgg
101 ttcgaaacgt ttcccaatca gagctatcaa tggcctcgaa tggcatgata
151 ccagtgaaga tcaattcaag atccactata aggggaacgg agagtccaag
201 atcgcaggct ccttcaagat ctctatcaat gtcttgacgc agaatgctaa
251 ataggtagac ggagaaccgg gtccgaaacc aggtccagac ccagcacccc
301 agccaacacc aacacccgaa ccaacgccag ccaaacacga gagatttatc
351 gcgtacaccg gtacgttgtc cacgcttatt agcgcgcgac agtcttctga
401 tagtatctca ctctactcca tccggagtca gagaattaga tacattgaag
451 atgagaattc cagttggaca aacatagatg caaaatggta ctcgcagaat
501 tctgttgagg ccattccaat gtttgtttat ccagtacccg aaggtacttg
551 gtcaattgag atatcttgtg aaggttacca ggcagcgtca agtacatcag
601 acccccatcg tggaaaatgc gatggcatga ttgcttacga cgacgattct
651 tcgaaggtgt ggaatgttgg tcagcagaat aacgtaacca ttaccaataa
701 taaggccgat aatgattgga aatatggtca ccctgatctc acgatcaatg
751 gtgacaaatt cgatcagaat caagtagtcg agaaagatgg aatcatttca
801 ttccatttag taactactgg cccaaatgca agtttctttc tcgtcgctcc
851 agctgttaag aaaacggcta aatacaactt ttgtgtatca tatggagatt
901 ggacggatag agatatggag ttcggaatgg tatcagtagt gctcgatgag
951 cacttggaag gtgcaaggag ttctcagtat gttaggaaaa cgccaagatc
1001 aggtcatgtt ggcgtcaatc gctctcaccg attgcaagac agttccacac
1051 cggtggaata tgtcagtgat gaagatagta gtagtagtaa tagtagtata
1101 gttagtaatc gaccatcagc tccggataat gacagtgaag cccagtttgc
1151 tgaatcactt aagggcaagc ttccaaccca atcgaagctt ccacccaaag
1201 ggtttctatc acggttgagc gcaagggaaa aagaagagat ttctagttca
1251 aagccctcca atgttgatcg ccaggttggc cctcttgttg ctgcttatgg
1301 atacccgtct cagacaggtg tttatgacgc agcaagagag atactgcgag
1351 ctaaagaagc tgcagagaac ctggcagaat tagaaaggga tttaaaggag
1401 attaacaagc tcgaaccacc ggatgtaatt gttcaggaag aaatccctga
1451 ctttgtgccg ccatcggaga agatattaaa ggaagatgat cctgactatg
1501 tatctccgat ttggcagaat gccgaccagg ctgtgttggt ctcaagttat
1551 gagcctcgag actggagtcg gccaacttat gagtcgggtg acccacctaa
1601 gaaggcagga acactcaaag gtactctctc caaattaggg ggttctttaa
1651 ggagtggtga atcgtctctt agaggtagcc tccgcaagac gcaagatcaa
1701 actgatctag ataacaagtt atccaaactc agtgttgtcc agagatccca
1751 gtaccaaagg attctcaaca gcatgggtaa gacgcgtgcg cgagcatata
1801 ttgatggttt agatttagct tagtataata gaagtaagtg tacgctttcc
1851 atcacattag gtcggagcca accttggtga gttgctgtcg tgggatcctg
1901 ggaaacaggt tcggtgaata aaaagccggt aatctcgggc gttcgtcaga
1951 cgccgtcgta tcaacacagt at