Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:59J.

ACC No: AB076409

Dated: 2003-07-07 | Length: 1086 | CRC: 1208451216

                !!NA_SEQUENCE 1.0
ID   AB076409   standard; RNA; VRL; 1086 BP.
XX
AC   AB076409;
XX
SV   AB076409.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:59J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX54.
DR   SPTREMBL; Q8JX54; Q8JX54.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="59J"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX54"
FT                   /db_xref="SPTREMBL:Q8JX54"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02745.1"
FT                   /translation="MAAVTFATAITNTTASKPALTGMIQFGNFPPVPLRSTTVTTVATS
FT                   VAQPKLHTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEARTKWPLHKTPSMKRKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFLKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSNYSGDRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
XX
SQ   Sequence 1086 BP; 347 A; 233 C; 292 G; 214 T; 0 other;

 AB076409  Length: 1086  July 15, 2003 09:13  Type: N  Check: 1648  ..

       1  atggcagcag ttacatttgc aaccgcaatc actaacacca ccgcaagcaa
      51  accagcactc accggaatga tacagtttgg gaatttccca ccagtaccat
     101  tgcgatccac caccgtcacc acagtcgcca cttcagtggc gcaacctaaa
     151  ctgcacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagacca
     301  aacgccgtgt tgaggatgca cgaggaagca aacaaggaga gggcactctt
     351  tttggactgg gaggctagtt tgaagagaag ctcatatgga attgctgaga
     401  acgagaaagt tgtaatgaca actcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggaaagac gtagagcgca
     501  acaaccaatc atactaaagt gggagcctaa attgagcggg atctcaattg
     551  gaggagggct ctccgcgagc gcgatcgaag tggaagaagc ccgcacaaag
     601  tggccgcttc acaagacacc gtcaatgaag aggaagacgg tgcacagaag
     651  atgcaagatg aatgatcaag gaattgacat gttaatgcgt tctttgatta
     701  aaatctttaa ggcgaagagt gcgaatattg agttcattgg aaggaagtcc
     751  attaaagtgg atttcttaaa gaaagagcaa acgaagtttg ccagagtaca
     801  agtagtgcat ttgctcggaa agcgagcaca acgcgacctg ttgactggtg
     851  cagaagagaa ccacttcatt gacaccctaa gcaactactc aggagatagg
     901  aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat
     951  cagaaacggc attttgactc agaagcagag cagaagtcct tcgcaagcct
    1001  ttgtgattcg aggggaacat gaagggaagt tgtatgacgc cagagttaag
    1051  gtcacaaagg tgatgagcca caaaatcata cactat