Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:ED71J.

ACC No: AB076430

Dated: 2003-07-07 | Length: 1086 | CRC: 817679336

                !!NA_SEQUENCE 1.0
ID   AB076430   standard; RNA; VRL; 1086 BP.
XX
AC   AB076430;
XX
SV   AB076430.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:ED71J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX33.
DR   SPTREMBL; Q8JX33; Q8JX33.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ED71J"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX33"
FT                   /db_xref="SPTREMBL:Q8JX33"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02766.1"
FT                   /translation="MAAVTFATAITNTTTSKPALTGMVQFGNFPPVPLRSTTVTTVAAS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRGSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKKTVHRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVVHLLGKRAQRDLL
FT                   TGAEENHFIDTLSNYSGNRKIINPGVVCAGWSGIVIRNGNLTQKRSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
XX
SQ   Sequence 1086 BP; 347 A; 229 C; 294 G; 216 T; 0 other;

 AB076430  Length: 1086  July 15, 2003 09:14  Type: N  Check: 1882  ..

       1  atggcagcag ttacatttgc aaccgcaatc actaacacca ccacaagcaa
      51  accagcactc accggaatgg tacagtttgg gaatttccca ccagtgccat
     101  tgcgatccac caccgtcacc acagtcgccg cttcagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagacca
     301  aacgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggctagtt tgaagagagg ctcatatgga attgctgaga
     401  acgagaaagt tgtaatgaca actcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggaaagac gtagagcgca
     501  acaaccaatc atactaaagt gggagcctaa attgagcggg atctcaattg
     551  gaggagggct ctccgcgagc gcgatcgaag tggaagaagt ccgcacaaag
     601  tggccgcttc acaagacacc gtcaatgaag aagaagacgg tgcatagaag
     651  atgcaagatg aatgatcaag gaattgacat gttaatgcgt tctttgatta
     701  aaatctttaa ggcgaagagt gcgaacattg agttcattgg aaggaagtcc
     751  attaaagtgg atttcgtaaa gaaagagcaa acgaagtttg ccagagtaca
     801  agtagtgcac ttactcggaa agcgagcaca acgcgacctg ttgactggtg
     851  cagaagagaa ccactttatt gataccctaa gcaactactc aggaaatagg
     901  aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgttat
     951  cagaaatggc aatttgactc agaagcggag cagaagtcct tcgcaagcct
    1001  ttgtgattcg aggggaacat gaagggaagt tgtatgacgc cagggttaag
    1051  gtcacaaagg tgatgagcca caaaatcata cactat