Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:KYD81J.

ACC No: AB076434

Dated: 2003-07-07 | Length: 1086 | CRC: 96723164

                !!NA_SEQUENCE 1.0
ID   AB076434   standard; RNA; VRL; 1086 BP.
XX
AC   AB076434;
XX
SV   AB076434.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:KYD81J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX29.
DR   SPTREMBL; Q8JX29; Q8JX29.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="KYD81J"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX29"
FT                   /db_xref="SPTREMBL:Q8JX29"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02770.1"
FT                   /translation="MAAITFAPAITNAITNKPASTGMVQFGNFPPVPLRTTIATTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGPGSSAKATRQQLNIAPDANLREAAALEVAKPKPNAVL
FT                   RMHEGANRERALFLDWETSLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRVQQPIVLKWEPQLSTLSIGGGPAANVIEAEEVRTKWPLHKTPSMKKKTVFKACRMSN
FT                   QGIDMLMRSLIKVFKAKNATIEYTAKKSINIDFVRKERTKFARIQVAHMLGRRAQRDLL
FT                   TGVEENHFIDTLSGYSGNKRLISPGVVCAGWSGIIIRDGVLTQSQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
XX
SQ   Sequence 1086 BP; 343 A; 257 C; 283 G; 203 T; 0 other;

 AB076434  Length: 1086  July 15, 2003 09:14  Type: N  Check: 5437  ..

       1  atggcagcaa tcacattcgc accagcaatc accaacgcca tcaccaacaa
      51  accagcatcc accggaatgg tacaatttgg gaatttccca ccagtaccat
     101  tgcgaaccac catcgcaacc acagtcgcca ccccagtggc gcaacctaaa
     151  ctgtacacag tacagtttgg aagtcttgac ccagtagtcg tcaagggtgg
     201  accagggtcc tctgctaagg caacccgcca gcagcttaac atcgcaccag
     251  acgctaacct cagggaagcc gcagctttgg aggttgcaaa acccaagccg
     301  aatgccgtgt tgagaatgca cgagggggca aacagagagc gagcgctctt
     351  cttggactgg gaaaccagtt tgaaaagaag ctcgtatggc attgctgaaa
     401  acgagaaagt cgtgatgaca actcgtggtg tcagcaagat agtgcccaga
     451  agttcacggg cgatgaagca aaagcgcgcg agggagaggc gcagggtaca
     501  acaaccgatt gtgctaaaat gggagccaca actgagcaca ctctctattg
     551  gaggggggcc tgccgcaaat gtaattgagg cagaggaagt gcgcacaaag
     601  tggccactac acaaaacacc gtcaatgaag aaaaagacgg tgttcaaggc
     651  atgcagaatg agcaaccaag gaattgacat gctaatgcgt tccttgatca
     701  aggtcttcaa ggcgaagaac gccaccattg aatacactgc gaagaagtct
     751  atcaacatag actttgttag gaaggagcga acaaagttcg ccagaatcca
     801  ggtggcacat atgcttggta gaagagcgca acgtgacctg ttaactggag
     851  tggaggaaaa ccactttatt gacactctca gtggttactc aggtaacaag
     901  agactcataa gcccaggagt ggtttgtgct ggctggagtg gaataatcat
     951  tagagacgga gttctcactc aaagtcagag cagaagtccg tcacaagcct
    1001  ttgtgatcag aggcgaacat gaaggcaaat tgtatgatgc cagagtcaaa
    1051  gttacgaagg tcatgagtca caaaatcata cactat