Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:CZE1.

ACC No: AB076449

Dated: 2003-07-07 | Length: 1086 | CRC: 2044432020

                !!NA_SEQUENCE 1.0
ID   AB076449   standard; RNA; VRL; 1086 BP.
XX
AC   AB076449;
XX
SV   AB076449.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:CZE1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JX14.
DR   SPTREMBL; Q8JX14; Q8JX14.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CZE1"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JX14"
FT                   /db_xref="SPTREMBL:Q8JX14"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02785.1"
FT                   /translation="MAAVTFAPAITNATTSKSASTGMVQFGSFPPVPLRSTVAITAATP
FT                   VAQPRLYTVQFGSLDPVVVKGGAGSSAKATRQQPSIEIEASLREAAALEVAKPKPNAVV
FT                   RMHEEMNKERALFLDWEASLQRCSYGIAENEKVVMTTRGASKIVLRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKPSDLSIGGGPSAKTIEAEEIRTKWPLHKTPSMKRKTIHKPCRMNK
FT                   QGIDMLMCSLIKIFKAKNANIEYTGRKSIKVDFIRKEKMRFARVQVEHLLGRRAQRDLS
FT                   TGGEENHFIDILSCYSGSKKAIKPGVICAGWSGVVVRYGALTQKRSRSPSEAFVVRGEH
FT                   EGKLYDARIKVTKTMSHKIIHF"
XX
SQ   Sequence 1086 BP; 356 A; 245 C; 288 G; 197 T; 0 other;

 AB076449  Length: 1086  July 15, 2003 09:14  Type: N  Check: 2517  ..

       1  atggcagcag taacattcgc accagcaatc accaacgcca ccaccagcaa
      51  atcagcatcc accggaatgg tgcaatttgg gagtttccca ccagtaccat
     101  tacgatccac cgtcgctatc acagccgcca ccccagtggc gcaacctagg
     151  ctgtacacag tacagtttgg aagccttgac ccagtagtcg tcaagggcgg
     201  agcagggtcc tctgctaagg caacccgcca gcagcctagc attgaaatag
     251  aagctagcct cagggaagcc gcagctttgg aggttgcaaa acccaaaccg
     301  aatgccgtgg tgaggatgca cgaagaaatg aacaaggaga gagcactttt
     351  tctggactgg gaagccagct tacaaagatg ttcgtatggc atcgccgaga
     401  acgagaaagt cgtgatgaca actagaggag ccagcaagat agtgctcaga
     451  agttcaaggg caatgaaaca gaagcgtgca agagaaagac gcagggcgca
     501  acagccaata atcttgaaat gggagccgaa accgagtgat ctctctattg
     551  ggggaggacc ctctgcaaag acgattgaag cggaggaaat ccgcaccaag
     601  tggccactac acaagacacc atcaatgaag aggaagacga tacacaagcc
     651  gtgtaggatg aacaagcaag gaattgacat gttaatgtgc tccctgatta
     701  agatctttaa ggcaaagaac gccaacatcg agtacacagg aagaaaatcc
     751  atcaaggtgg atttcatcag gaaggagaag atgaggttcg ccagagtcca
     801  agtagaacat ctacttggga ggagagcgca acgtgatcta tcaactggag
     851  gagaagaaaa tcacttcatt gacattctta gctgctactc agggagcaag
     901  aaagccataa agccaggagt gatatgtgct ggttggagcg gagttgtagt
     951  acgatatgga gctttaaccc agaaacgaag tagaagcccg tcggaagctt
    1001  ttgtagttag aggcgagcac gaaggcaaac tgtatgatgc tagaatcaag
    1051  gttacaaaaa caatgagcca caagatcatt catttc