Sequence of DPV Turnip mosaic virus

Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:CHN5.

ACC No: AB076478

Dated: 2003-07-07 | Length: 1086 | CRC: -578112402

                !!NA_SEQUENCE 1.0
ID   AB076478   standard; RNA; VRL; 1086 BP.
XX
AC   AB076478;
XX
SV   AB076478.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus P1 gene for polyprotein, partial cds, isolate:CHN5.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JWY5.
DR   SPTREMBL; Q8JWY5; Q8JWY5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHN5"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JWY5"
FT                   /db_xref="SPTREMBL:Q8JWY5"
FT                   /note="first protein"
FT                   /gene="P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02814.1"
FT                   /translation="MAAVTFASAITNATINKPALTGMVQFGSFPPMPLRSTTVTTAATS
FT                   VAQPKLYTVQFGSLDPVVVKGRAGSFAKATRQQPNVEIDVSLSEAAALEVAKPRSDAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RIAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKKRMVHRICKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKEQTKFARIQVAHLLGKRARRDLS
FT                   TGMEENHFIDILSEYSGYKTTINPGVICAGWSGIVVRNGILAQRRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIMHF"
XX
SQ   Sequence 1086 BP; 341 A; 235 C; 293 G; 217 T; 0 other;

 AB076478  Length: 1086  July 15, 2003 09:14  Type: N  Check: 4717  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca ctatcaataa
      51  accagcactc accggaatgg tacagtttgg gagtttccca ccaatgccat
     101  tgcgatcaac caccgtcacc acagccgcca cttcggtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagggtag
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa gcctagatcg
     301  gatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggctagtt tgaagagaag ctcgtatgga attgctgaga
     401  acgagaaagt tgtgatgaca actcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggagaggc gtatagcgca
     501  gcaaccaatt atactaaagt gggagcccaa attgagcggg atctcaattg
     551  gaggagggct ctccgcgagc gcgatcgaag tggaagaagt ccgcacaaag
     601  tggccgcttc acaagacacc gtcaatgaag aagaggatgg tgcacagaat
     651  atgcaagatg aacgaccaag gaattgacat gttgacacga tccctggtta
     701  agattttcaa gactaagagt gccaacattg aatacatcgg gaagaaatcg
     751  atcaaggttg atttcatcag aaaagagcag acgaaattcg caagaatcca
     801  agtagcacac ttactcggga agcgagcacg tcgcgacttg tcaactggaa
     851  tggaagaaaa ccattttatt gatattctca gcgagtactc aggttacaaa
     901  acaaccatta atccaggagt gatttgcgca ggttggagtg gcatagttgt
     951  tagaaatgga attctagccc agagacgaag cagaagccca tcagaggcct
    1001  ttgtaattag gggtgagcac gaaggcaagt tgtacgatgc caggatcaaa
    1051  gtcacgagga caatgagtca caagattatg cacttt