Sequence of DPV Turnip mosaic virus

Turnip mosaic virus CP gene for polyprotein, partial cds, isolate:YuJ.

ACC No: AB076503

Dated: 2003-07-07 | Length: 864 | CRC: -2047549632

                !!NA_SEQUENCE 1.0
ID   AB076503   standard; RNA; VRL; 864 BP.
XX
AC   AB076503;
XX
SV   AB076503.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus CP gene for polyprotein, partial cds, isolate:YuJ.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JWW0.
DR   SPTREMBL; Q8JWW0; Q8JWW0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="YuJ"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JWW0"
FT                   /db_xref="SPTREMBL:Q8JWW0"
FT                   /note="coat protein"
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02839.1"
FT                   /translation="AGETLDAGLTDEQKQAEKEKKEREKAEKERERQKQLALKKGKDVA
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
XX
SQ   Sequence 864 BP; 285 A; 182 C; 232 G; 165 T; 0 other;

  AB076503  Length: 864  July 15, 2003 09:09  Type: N  Check: 7767  ..

       1  gcaggtgaga cacttgatgc aggtttgaca gacgagcaaa agcaggcgga
      51  gaaggagaaa aaggagagag agaaggcaga gaaggaacga gagcggcaga
     101  agcagttggc actcaagaaa ggcaaggatg ttgcacaaga agagggaaaa
     151  cgcgacaagg aagtaaacgc tggaacctct ggaactttca gtgtgcccag
     201  acttaagagt cttacaagca agatgcgcgt gccaagatac gaacaaagag
     251  tggctctaaa cctcgatcat ctaatcctat acacgccgga gcagacggat
     301  ctatccaaca cacgttcaac gcgaaagcag tttgacacat ggtttgaagg
     351  cgtaatggct gactacgaac tgacggagga caaaatgcaa attattctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgcg tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaagc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aacaatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gtta