Sequence of DPV Turnip mosaic virus

Turnip mosaic virus CP gene for polyprotein, partial cds, isolate:USA1.

ACC No: AB076534

Dated: 2003-07-07 | Length: 864 | CRC: 885705623

                !!NA_SEQUENCE 1.0
ID   AB076534   standard; RNA; VRL; 864 BP.
XX
AC   AB076534;
XX
SV   AB076534.1
XX
DT   06-JUL-2002 (Rel. 72, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 2)
XX
DE   Turnip mosaic virus CP gene for polyprotein, partial cds, isolate:USA1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (18-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z.,
RA   Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A.;
RT   "Molecular evolution of Turnip mosaic virus: evidence of host adaptation,
RT   genetic recombination and geographical spread";
RL   J. Gen. Virol. 83:1511-1521(2002).
XX
DR   GOA; Q8JWS9.
DR   SPTREMBL; Q8JWS9; Q8JWS9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="USA1"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q8JWS9"
FT                   /db_xref="SPTREMBL:Q8JWS9"
FT                   /note="coat protein"
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /protein_id="BAC02870.1"
FT                   /translation="AGETLDAGLTEEQKQAEKDKKEREKAEKERERQKQLALKKGKDVA
FT                   QEEGKRDREVNAGTSGTFSVPRLKNLTSKMRVPRYEKRAALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVQGL"
XX
SQ   Sequence 864 BP; 288 A; 183 C; 230 G; 163 T; 0 other;

  AB076534  Length: 864  July 15, 2003 09:09  Type: N  Check: 4893  ..

       1  gcaggtgaga cgcttgatgc tggtttgaca gaagagcaaa agcaggcaga
      51  gaaggataag aaagagagag agaaggcaga aaaggaacga gagaggcaaa
     101  aacagttggc actcaagaaa ggcaaagatg tcgcacaaga agaaggaaaa
     151  cgcgacaggg aagtaaacgc tggaacgtct ggaactttca gtgtacccag
     201  actcaagaat ctgacaagca agatgcgcgt gccaagatac gagaaaagag
     251  cggctctaaa cctcgatcat ctaatcctct acacaccgga gcagacggat
     301  ctatccaata cacgatcaac gcggaagcag tttgacacat ggtttgaagg
     351  tgtgatggcc gattacgaac tgacggagga caaaatgcaa atcattctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgacgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgctacgca tttgatttct atgaaatgac ttctaggact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttcaggg gtta