Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus RNA1, complete sequence, strain:36a1.
ACC No: AB079889
Dated: 2012-05-22 | Length: 3356 | CRC: -862123903
ID AB079889; SV 1; linear; genomic RNA; STD; VRL; 3356 BP.
XX
AC AB079889;
XX
DT 22-MAY-2012 (Rel. 112, Created)
DT 22-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE Cucumber mosaic virus RNA1, complete sequence, strain:36a1.
XX
KW .
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-3356
RA Natsuaki T.;
RT ;
RL Submitted (16-FEB-2002) to the INSDC.
RL Contact:Tomohide Natsuaki Utsunomiya University, Faculty of Agriculture;
RL Mine-machi 350, Utsunomiya, Tochigi 321-8505, Japan
XX
RN [2]
RA Suzuki M., Nakazono E., Natsuaki T., Kosaka Y., Okuda S.;
RT "Cucumber mosaic virus (CMV) 36a1";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3356
FT /organism="Cucumber mosaic virus"
FT /segment="1"
FT /strain="36a1"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12305"
FT CDS 96. .3077
FT /codon_start=1
FT /transl_table=1
FT /product="1a protein"
FT /protein_id="BAM15838.1"
FT /translation="MATSSFNINELVASHGGKGLLATALVDKTAHEQLEEQLQHQRRGR
FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL
FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ
FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ
FT GVIPELNCQWRKIRSAFSETEDVTPLSGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH
FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK
FT DYVGLKIPASQDLVEWKTVRILMSTLRETEEIAMRCYNGKKAWMEQFKVILGVLSAKSS
FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR
FT PLRVFFSGVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ
FT AVTDGKILAAQKAEKLAEKLAQPVIEVSDSPEAPSQTPDDTAEVCGKEREVSELDSLSA
FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD
FT TYFTVDPMVNIHFSTGRWMRPVPEGVVYSVGYNERGLGPKSDGELYIVNSECVICNSES
FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS
FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE
FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTRSKYTKW
FT VSQSKVKRSVTSRAIVSVTLVDLDPSRFYITMTQADKASLISRAKEMNLPKTFWNERIK
FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC
FT VARA"
XX
SQ Sequence 3356 BP; 846 A; 743 C; 821 G; 946 T; 0 other;
ab079889 Length: 3356 22-MAY-2012 Type: N Check: 9049 ..
1 gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact
51 accctttgaa aacctctcat tcttaatctt ttctttgtaa ttcctatggc
101 gacgtcctcg ttcaacatca atgaactggt agcctcccac ggcggtaaag
151 gactactcgc gaccgccctc gttgataaga cagctcatga gcagctcgag
201 gagcaattac agcatcaacg tagaggccgt aaggtctaca tccggaacgt
251 attgggtgta aaggattccg aggtcatccg gaatcggtat ggaggaaagt
301 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt
351 gccctccgct tgtgtgaaac tctcgattgt ctagactctt tcccttcatc
401 aggtctgcgg caggacctcg tcttagactt cggaggaagt tgggtcacac
451 attacctccg cggacataac gtacattgtt gttccccttg tttgggtatc
501 cgcgataaaa tgcgccatgc ggaacgttta atgaacatgc gcaagatcat
551 cttgaacgat ccacaacagt tcgatggtcg acagccggat ttctgcactc
601 aaccggctgc ggattgcaaa gtacaagccc actttgctat atctattcat
651 ggaggttatg atatgggctt cagaggatta tgtgaagcga tgaacgctca
701 cggaaccact attttgaagg gaacgatgat gttcgatggt gcgatgatgt
751 ttgacgatca aggtgtaatt cccgaactta attgtcagtg gaggaagatc
801 aggagtgctt tctccgaaac tgaagacgtc acaccgttgt ctggtaagct
851 taattccaca gtattctccc gcgtgcggaa attcaagact atggtagctt
901 tcgatttcat taacgagtct accatgtcct atgttcatga ctgggagaat
951 ataaaatctt ttcttacaga ccagacttat tcataccgag ggatgactta
1001 cggtattgaa cgctgtgtta ttcacgccgg catcatgacg tacaagatta
1051 tcggtgtacc tgggatgtgt ccacccgaac tcattcgaca ttgtatttgg
1101 ttcccctcca ttaaagacta tgttggtctg aagattcccg cgtcgcagga
1151 tttggttgag tggaagacag tgcggatttt aatgtcaaca ttacgtgaga
1201 ctgaagagat tgccatgagg tgttataatg gtaagaaagc gtggatggaa
1251 caatttaagg ttatcctagg tgtcctatct gcgaaatcat ctaccattgt
1301 tatcaatggt atgtccatgc aatctggcga gcgaatagat attaatgact
1351 atcattacat cggtttcgcc attcttcttc acacaaaaat gaagtatgaa
1401 caacttggaa aaatgtatga tatgtggaat gcttcgagca tctcgaagtg
1451 gttcgcagcg ttgacccgtc cgctgcgtgt gttcttctcc ggtgttgttc
1501 acgcgctgtt cccgactttg agaccccgcg aggaaaaaga attcctgatc
1551 aagctctcca ccttcgtgac ttttaatgaa gagtgctcat ttgacggtgg
1601 agaggaatgg gacgtgatat catctgctgc atacgttgcc acgcaggctg
1651 ttactgatgg gaaaattttg gctgcgcaga aagccgagaa gcttgctgag
1701 aagcttgcac aacccgtgat agaggtatca gacagcccag aggcgccttc
1751 tcaaacgcct gatgatactg ctgaagtttg tggaaaggag cgagaggttt
1801 cggaactcga ctccttgtca gctcagacac gttcccccat cactagagtt
1851 gctgaaaggg ctactgccat gttagagtat gccgcttatg agaaacaatt
1901 acatgacacc acggtgtcta atttaaaacg tatttggaac atggcgggtg
1951 gtgatgacaa aagaaactcc ctagagggta acttgaagtt cgttttcgat
2001 acgtatttta ccgttgatcc tatggtgaac attcatttct ccacgggtcg
2051 gtggatgcgt cctgtgcccg agggtgttgt ctattctgtt ggttataatg
2101 aacgcggttt aggtccgaag tctgatggag agctatatat tgtcaatagt
2151 gaatgcgtga tttgcaacag tgagtcttta tctaccgtca cgcgttctct
2201 tcaagctcca accggaacca ttagtcaagt tgacggagtt gctggttgcg
2251 ggaaaaccac ggcaattaag tccatttttg aaccgtctac tgacatgatt
2301 gttaccgcga acaagaagtc cgcccaagat gtacgtatgg cacttttcaa
2351 atcgtcggat tccaaagaag cttgcacttt cgttcgaaca gccgattctg
2401 tcctacttaa tgaatgtccg actgttagta gggttttggt tgatgaggtt
2451 gtgttattgc actttggtca attgtgtgcc gtcatgtcca agttgaaggc
2501 cgtgcgagcc atatgttttg gggattcgga gcagattgct ttttcctcgc
2551 gagatgcctc atttgacatg cgtttctcta agatcattcc tgatgaaact
2601 agtgatgcgg acactacatt ccgtagccca caagatgtcg tgccgcttgt
2651 gcgtttaatg gctacgaagg cccttccgaa aggaacccgt tcaaaataca
2701 cgaaatgggt ttctcagtct aaagtgaaaa gatctgttac atctcgcgcc
2751 atcgttagtg tgacactggt tgatttggat ccttccaggt tttatataac
2801 gatgacccaa gctgataagg cttcactgat ttcaagggcg aaagagatga
2851 atttaccaaa gaccttctgg aacgaaagga ttaaaaccgt gcatgagtct
2901 caaggtatct ctgaagatca cgttactttg gtaagattaa agagcacaaa
2951 gtgtgacttg tttaaacagt tttcttattg tcttgtcgca ttgactagac
3001 acaaagtcac gttccgctac gagtactgcg gtgtattaaa cggtgattta
3051 atcgccgaat gtgttgctcg tgcttagcgg tgttcctctt cgggcgggat
3101 ctgagttggc ggtgatctgc aaaccgtctg aagtcactaa acacatcgtg
3151 tggtgaacgg gttgtccatc cagctaacgg ctaaaatggt cagtcgtgga
3201 gaaatccacg ccagcagatt tacaaatctc tgaggcgcct ttgaaaccat
3251 ctcctaggtt tcttcggaag gacttcggtc cgtgtacctc tagcacaacg
3301 tgctagtttc agggtacggg tgcccacctt tcgtgggggc ctctaaaagg
3351 agacca