Sequence of DPV Honeysuckle yellow vein mosaic virus

Honeysuckle yellow vein mosaic virus V1, C3, C2 genes for coat protein, replication enhancer protein, transcriptional transactivator protein, complete cds, isolate: HY12.

ACC No: AB108833

Dated: 2008-06-21 | Length: 1570 | CRC: 1492074453

                
ID   AB108833; SV 1; linear; genomic DNA; STD; VRL; 1570 BP.
XX
AC   AB108833;
XX
DT   22-APR-2003 (Rel. 75, Created)
DT   21-JUN-2008 (Rel. 96, Last updated, Version 3)
XX
DE   Honeysuckle yellow vein mosaic virus V1, C3, C2 genes for coat protein,
DE   replication enhancer protein, transcriptional transactivator protein,
DE   complete cds, isolate: HY12.
XX
KW   .
XX
OS   Honeysuckle yellow vein mosaic virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1570
RA   Takanami Y., Komuta K.;
RT   ;
RL   Submitted (18-APR-2003) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Yoichi Takanami Kyushu University, Graduated school of Bioresource
RL   and Bioenvironmental Sciences; 6-10-1, Hakozaki, Higashi-ku, Fukuoka,
RL   Fukuoka 812-8581, Japan
XX
RN   [2]
RA   Takanami Y., Komuta K.;
RT   "Diversity of Honeysuckle-infecting geminivirus (HsGV) in Japan";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1570
FT                   /organism="Honeysuckle yellow vein mosaic virus"
FT                   /isolate="HY12"
FT                   /mol_type="genomic DNA"
FT                   /country="Japan:Hyougo"
FT                   /note="synonym: Honeysuckle-infecting geminivirus"
FT                   /db_xref="taxon:180587"
FT   CDS             97. .870
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q80GK6"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q80GK6"
FT                   /protein_id="BAC75800.1"
FT                   /translation="MSRRPADIGIFTPAFRARRRLNFDGPYVNRVSVPIAQGTSKKRSW
FT                   AQRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFEKKDDVGHSGKMLCISDITRGNGLTH
FT                   RVGKRFCIKSVYIIGKIWMDENIKLKNHTNNVIFWLVRDRRPVSVPYGFQEAFNMYENE
FT                   PSTATIKQDLRDRLQVLHKFTGTVTGGQYASKEQAMIKRFWRLNHHVTYNHQEAAKYEN
FT                   HTENALLLYMACAHASDPVYATLKIRVYFYDSVQN"
FT   CDS             complement(867. .1271)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="C3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q805G8"
FT                   /protein_id="BAC75801.1"
FT                   /translation="MDSRTGDTITAAQAWNGAYIWTVPNPLYLKITSHAQRPFNMDQDI
FT                   ITIQIQFNHNLRSQLGLHKCFLTFKLWTHLQPLTSYFLNVFRERVLGYLDNLGVISINN
FT                   VIRAVDHELYDVLRGTESVQQFTDIKLKLY"
FT   CDS             complement(1012. .1419)
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="C2"
FT                   /product="transcriptional transactivator protein"
FT                   /db_xref="GOA:Q805H9"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q805H9"
FT                   /protein_id="BAC75802.1"
FT                   /translation="MRPSSPSTAHSTQVPIRVQHRLGKKRAPRRRRIDLNCGCSIYVAL
FT                   GCANNGFTHRGHHHCSSGMEWRVYLDSAKSPISQNHEPRSTAIQHGPGHNNDTDPIQPQ
FT                   PEVSTGSTQVLPDLQALDSLTTSDLLFLECV"
XX
SQ   Sequence 1570 BP; 422 A; 322 C; 369 G; 457 T; 0 other;

ab108833 Length: 1570  21-JUN-2008  Type: N  Check: 2810  ..

       1  ttaaatacct tcttctcgtt gagtcaacat actctccgga tacggtgggt
      51  ttcgatttga tacgtgatct tatactcgtt gttcgtgcga agaattatgt
     101  cgaggcgacc tgcagatata gggattttca ctcccgcctt cagggcacgt
     151  cgacgtctga acttcgacgg cccgtatgtc aaccgtgtga gtgtccccat
     201  tgcccaaggc acaagcaaaa agagatcgtg ggctcaaagg cccatgtatc
     251  ggaagcccag gatatacagg atgtacagaa gccctgatgt acctaagggt
     301  tgtgaaggcc cctgtaaggt ccaatctttc gagaagaaag atgatgttgg
     351  tcactctggt aaaatgttat gtatctccga tattactcgt ggtaatgggc
     401  ttacacatcg tgttggtaag aggttttgta taaaatcagt ctatatcatt
     451  ggaaagatat ggatggatga gaacattaag ctcaagaatc acactaataa
     501  cgtgatcttc tggcttgtta gagatagacg ccctgtttcc gttccttatg
     551  gtttccaaga ggcgtttaat atgtacgaaa atgaacctag tacagctact
     601  atcaaacagg atttgagaga ccgcttgcag gttttacaca agttcactgg
     651  tacggttaca ggtggacaat atgcgtctaa ggaacaagct atgatcaagc
     701  gtttctggag gttgaatcac catgtcacat acaatcacca agaggctgct
     751  aaatatgaga accatactga gaatgcacta ttattgtata tggcatgtgc
     801  tcatgccagt gatccagtgt atgctacatt aaaaatcaga gtgtatttct
     851  acgattcagt acaaaattaa taaagcttga gttttatatc agtgaattgt
     901  tgtacagatt cagttcctct caatacatcg tacaattcat gatcaaccgc
     951  cctaattaca ttgttaattg aaataacacc caaattatct aaatacccta
    1001  atacacgttc cctaaacaca ttcaagaaat aggaggtcag aggttgtaag
    1051  tgagtccaga gcttgaaggt caggaagcac ttgtgtagac ccagttgaga
    1101  cctcaggttg tggttgaatt ggatctgtat cgttattatg tcctggtcca
    1151  tgttgaatgg ccgttgagcg tggctcgtga ttttgagata taggggattt
    1201  ggcactgtcc agatatacgc gccattccat gcctgagctg cagtgatggt
    1251  gtcccctgtg cgtgaatcca ttgttagcac aacctaatgc gacgtaaata
    1301  gaacacccgc agtttagatc aatcctccgc ctgcgaggtg ctctcttctt
    1351  ccctaatctg tgctgaaccc tgatgggaac ctgagtagag tgggccgtag
    1401  agggtgatga aggacgcatt ttttactgcc catgctttta gtgcggcgtt
    1451  cttgtcctca tctaaatact cggtgtatga tgacgtcggg cctggattgc
    1501  agaggaagat tgttgggata ccacctttaa tctgaattgg tttcccgtac
    1551  ttggtgttgc tttgccagtc