Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus-Israel [Japan:Misumi:Stellaria] DNA, complete genome.
ACC No: AB116631
Dated: 2010-06-03 | Length: 2774 | CRC: -273218174
ID AB116631; SV 1; linear; genomic DNA; STD; VRL; 2774 BP.
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AC AB116631;
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DT 20-JAN-2004 (Rel. 78, Created)
DT 03-JUN-2010 (Rel. 105, Last updated, Version 5)
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DE Tomato yellow leaf curl virus-Israel [Japan:Misumi:Stellaria] DNA, complete
DE genome.
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KW .
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OS Tomato yellow leaf curl virus-Israel [Japan:Misumi:Stellaria]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2774
RA Ueda S., Kimura T., Onuki M., Hanada K., Iwanami T.;
RT ;
RL Submitted (07-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shigenori Ueda National Agricultural Institute for Kyushu Okinawa
RL Region; 1823 Mii, Kurume, Fukuoka 839-8503, Japan
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RN [2]
RA Ueda S., Kimura T., Onuki M., Hanada K., Iwanami T.;
RT "Three distinct groups of isolates of Tomato yellow leaf curl virus in
RT Japan and construction of an infectious clone";
RL J. Gen. Plant Pathol. 70:232-238(2004).
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FH Key Location/Qualifiers
FH
FT source 1. .2774
FT /organism="Tomato yellow leaf curl virus-Israel
FT [Japan:Misumi:Stellaria]"
FT /host="Stellaria aquatica"
FT /strain="Mis"
FT /mol_type="genomic DNA"
FT /country="Japan:Kumamoto, Misumi"
FT /note="TYLCV-IL[JR:Mis:Ste]"
FT /db_xref="taxon:503400"
FT CDS 307. .657
FT /codon_start=1
FT /transl_table=1
FT /gene="V2"
FT /product="V2"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q764G8"
FT /protein_id="BAD07426.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKP"
FT CDS 467. .1243
FT /codon_start=1
FT /transl_table=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:Q764G7"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q764G7"
FT /protein_id="BAD07427.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1240. .1644)
FT /codon_start=1
FT /transl_table=1
FT /gene="C3"
FT /product="C3"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q764G6"
FT /protein_id="BAD07428.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVLKYLDSLGVISINN
FT VIRSVDHVLYDVLENTINVTETHDIKYKFY"
FT CDS complement(1385. .1792)
FT /codon_start=1
FT /transl_table=1
FT /gene="C2"
FT /product="C2"
FT /db_xref="GOA:Q764G5"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:Q764G5"
FT /protein_id="BAD07429.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGHGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1701. .2774)
FT /codon_start=1
FT /transl_table=1
FT /gene="Rep"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q764G4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q764G4"
FT /protein_id="BAD07430.1"
FT /translation="MPRLFNIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT KELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWTLKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT CDS complement(2330. .2623)
FT /codon_start=1
FT /transl_table=1
FT /gene="C4"
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q764G3"
FT /protein_id="BAD07431.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
XX
SQ Sequence 2774 BP; 753 A; 532 C; 609 G; 880 T; 0 other;
ab116631 Length: 2774 03-JUN-2010 Type: N Check: 5882 ..
1 gttgaaatga atcggtgtcc ctcaaagctc tatggcaatc ggtgtatcgg
51 tgtcttactt atacctggac acctaatggc tatttggtaa tttcatgaat
101 gttcattgta attcaaaatt caaaaatcaa atcattaaag cggccatccg
151 tataatatta ccggatggcc gcgccttttc cttttatgtg gtccccacga
201 gggttacaca gacgtcactg tcaaccaatc aaattgcatc ctcaaacgtt
251 agataagtgt tcatttgtct ttatatactt ggtccccaag ttttttgtct
301 tgcaatatgt gggacccact tcttaatgag tttcctgaat ctgttcacgg
351 atttcgttgt atgttagcta ttaaatattt gcagtccgtt gaggaaactt
401 acgagcccaa tacattgggc cacgatttaa ttagggatct tatatctgtt
451 gtaagggccc gtgactatgt cgaagcgacc aggcgatata atcatttcca
501 cgcccgtctc gaaggttcgc cgaaggctga acttcgacag cccatacagc
551 agccgtgctg ctgtccccat tgtccaaggc acaaacaagc gacgatcatg
601 gacgtacagg cccatgtacc gaaagcccag aatatacaga atgtatcgaa
651 gccctgatgt tccccgtgga tgtgaaggcc catgtaaagt ccagtcttat
701 gagcaacggg atgatattaa gcatactggt attgttcgtt gtgttagtga
751 tgttactcgt ggatctggaa ttactcacag agtgggtaag aggttctgtg
801 ttaaatcgat atatttttta gggaaagtct ggatggatga aaatatcaag
851 aagcagaatc acactaatca ggtcatgttc ttcttagtcc gtgatagaag
901 gccctatgga agcagcccaa tggattttgg acaggttttt aatatgttcg
951 ataatgagcc cagtaccgca accgtgaaga atgatttgcg ggataggttt
1001 caagtgatga ggaaatttca tgctacagtt attggtggac cctctggaat
1051 gaaggaacag gcattagtta agagattttt taaaattaac agtcatgtaa
1101 cttataatca tcaggaggca gccaagtacg agaaccatac tgaaaacgcc
1151 ttgttattgt atatggcatg tacgcatgcc tctaatccag tgtatgcaac
1201 tatgaaaata cgcatctatt tttatgattc aatatcaaat taataaaatt
1251 tatattttat atcatgagtt tctgttacat ttattgtgtt ttcaagtaca
1301 tcatacaata catgatcaac tgatctgatt acattgttaa tggaaattac
1351 accaagacta tctaaatact taagaacttc atatctaaat actcttaaga
1401 aatgaccagt ctgaggctgt aatgtcgtcc aaattcggaa gttgagaaaa
1451 catttgtgaa tccccatgac cttcctgatg ttgtggttga atcttatctg
1501 aatggaaatg atgtcgtggt tcattagaaa tggcctctgg ctgtgttctg
1551 ttatcttgaa atagagggga ttgtttatct cccagataaa aacgccattc
1601 tctgcctgag gagcagtgat gagttcccct gtgcgtgaat ccatgattat
1651 tgcagttgag gtggaggtag tatgagcagc cacagtctag gtctacacgc
1701 ttacgcctta ttggtttctt cttggctatc ttgtgttgga ccttgattga
1751 tacttgcgaa cagtggctcg tagagggtga cgaaggttgc attcttgaga
1801 gtccaatttt tcaaggatat gtttttttct tcgtctagat attccctata
1851 tgaggaggta ggtcctggat tgcagaggaa gatagtggga attccccctt
1901 taatttgaat gggcttcccg tactttgtgt tgctttgcca gtccctttgg
1951 gcccccatga attccttgaa gtgctttaaa taatgcgggt ctacgtcatc
2001 aatgacgttg taccacgcat cattactgta cacctttggg cttaggtcta
2051 gatgtccaca taaataatta tgtgggccta gagacctggc ccacattgtt
2101 ttccctgttc tgctatcacc ctcaatgaca atacttatgg gtctccatgg
2151 ccgcgcagcg gaagacacga cgttctcggc gacccactct tcaagttcat
2201 ctggaacttg attaaaagaa gaagaaagaa atggagaaac ataaacttct
2251 aaaggaggac taaaaatcct atctaaattt gaacttaaat tatgaaattg
2301 taaaatatag tcctttgggg ccttctcttt taatatattg agggcctcgg
2351 atttactgcc tgaattgagt gcttcggcat atgcgtcgtt ggcagattgc
2401 tgacctcctc tagctgatct gccatcgatt tggaaaactc caaaatcaat
2451 gaagtctccg tctttctcca cgtaggtctt gacatctgtt gagctcttag
2501 ctgcctgaat gttcggatgg aaatgtgctg acctgtttgg ggataccagg
2551 tcgaagaacc gttggttctt acattggtat ttgccttcga attggataag
2601 cacatggaga tgtggttccc cattctcgtg gagttctttg caaactttga
2651 tgtatttttt atttgttggg gtttctaggt tttttaattg ggaaagtgct
2701 tcctctttag agagagaaca attgggatat gttaggaaat aatttttggc
2751 atatatatta aataaacgag gcat