Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN3.

ACC No: AB179902

Dated: 2004-08-20 | Length: 1180 | CRC: -1092709978

                !!NA_SEQUENCE 1.0
ID   AB179902   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179902;
XX
SV   AB179902.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHN3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHN3"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6L7"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20316.1"
FT                   /translation="MAAVTFASAITNAIINKPALTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSLAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRAREK
FT                   RRAQQPIILKWEPKLSGISIGGGLSANAIEVEEDRTKWPLHKTPSMKKRIVHRTCKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKEQTKFARIQVAHLLGKRARRDLS
FT                   TGMEENHFIDILSEYSGNKTTINPGVVCAGWSGIVVRNEILAQRRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIMHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 391 A; 256 C; 299 G; 234 T; 0 other;

AB179902  Length: 1180  August 31, 2004 08:43  Type: N  Check: 8752  ..

       1  gataaaagca aacacaaatc tttcgaagca ttcaagcaat caaagatcct
      51  taaatctttc atcgttatca aagcaatcac caacagcaaa caaaatggca
     101  gcagttacat tcgcatcagc tatcaccaac gccattatca ataaaccagc
     151  actcaccgga atggtacagt ttgggagttt cccaccaatg ccattgcgat
     201  caaccaccgt caccacagtc gccacttcag tggcgcaacc taaactgtac
     251  acagtgcagt ttggaagcct tgacccagta gtcgtcaagg gtggagcagg
     301  gtcccttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaagcctag atcgaatgcc
     401  gtgttgagga tgcacgagga agcaaacaag gagagagcgc tctttttgga
     451  ctgggaggct agtttgaaga gaagctcgta tggaattgct gagaacgaga
     501  aagttgtgat gacaactcgt ggcgtcagca agatagtgcc cagaagttca
     551  agggcaatga agcaaaagcg cgcaagggag aagcgtagag cgcagcaacc
     601  aattatacta aagtgggagc ccaaattgag cgggatctca attggaggag
     651  ggctctccgc gaacgcgatc gaagtggaag aagaccgcac aaagtggccg
     701  cttcacaaga caccgtcaat gaagaagagg atagtgcaca gaacatgcaa
     751  gatgaacgac caaggaattg acatgttgac acgatccctg gttaagattt
     801  tcaagactaa gagtgccaac attgaataca tcgggaagaa atcgatcaag
     851  gttgatttca tcagaaaaga gcagacgaaa ttcgcaagaa tccaagtagc
     901  acacttactc gggaagcgag cacgtcgcga cttgtcaact ggaatggaag
     951  aaaatcattt tattgatatt ctcagcgagt actcaggtaa caaaacaacc
    1001  ataaatccag gagtagtttg cgcaggttgg agtggcatag ttgttagaaa
    1051  tgaaattcta gcccagagac gaagcagaag cccatcagag gcctttgtaa
    1101  ttaggggtga gcacgaaggc aagttgtacg atgccaggat caaagtcacg
    1151  aggacaatga gtcacaagat tatgcacttt