Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: RAD1.

ACC No: AB179925

Dated: 2004-08-20 | Length: 1180 | CRC: -103674612

                !!NA_SEQUENCE 1.0
ID   AB179925   standard; genomic RNA; VRL; 1180 BP.
XX
AC   AB179925;
XX
SV   AB179925.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: RAD1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1180
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1180
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="RAD1"
FT   5'UTR           <1. .94
FT   CDS             95. .>1180
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6J4"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20339.1"
FT                   /translation="MAAVTFASDITNAITNKPALTGMVQFGNFPPVPLRSTTITTVATS
FT                   VAQPKLYTVQFGSLDPVVIKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKSRSNTVL
FT                   RMHEEANKERALFLDWETSLKRSSYGIAENEKVIMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEAEEDRTKWPLHKTPSMKKRTVHRICRMND
FT                   QGVDMLTRSLVKIFKIKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTKTMSHKIVHF"
FT   mat_peptide     95. .>1180
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1180 BP; 398 A; 252 C; 292 G; 238 T; 0 other;

AB179925  Length: 1180  August 31, 2004 08:43  Type: N  Check: 6853  ..

       1  gattaaagca aacacaaatc tttcaaagca tccaagcaac caaagattct
      51  caaatctttc atcgttatca aagcaactac cgacagcaaa tcaaatggca
     101  gcagttacat tcgcatcaga tatcactaac gccatcacca acaaaccagc
     151  actcaccgga atggtacagt ttgggaattt cccaccagtg ccattgcgat
     201  ccaccaccat taccacagtc gccacttcag tggcgcaacc taaattgtac
     251  acagtgcagt ttggaagtct tgacccagta gtcatcaagg gtggagcagg
     301  gtcctttgct aaggcaacac gccagcagcc taacgttgaa atagacgtta
     351  gcctcagtga agccgcagct ctggaggttg cgaaatctag atcgaatacc
     401  gtgttgagaa tgcacgagga agcaaacaag gagagagcac tctttttgga
     451  ctgggagact agtttgaaga gaagttcgta tggaatcgcc gaaaacgaga
     501  aggttataat gacaactcgc ggcgtcagca agatagtgcc caggagttca
     551  agggcaatga agcaaaagcg cgcaagggag agacgtagag cgcagcaacc
     601  aattatacta aagtgggagc ccaaattaag cgggatttca atcggaggag
     651  ggctctctgc gagcgcgatc gaagcagaag aggatcgcac aaagtggccg
     701  cttcataaga caccgtcaat gaagaagagg acggtacaca ggatatgcag
     751  gatgaacgac caaggagttg acatgttgac acgatccctg gttaagattt
     801  tcaagattaa gagtgccaac attgagtaca tcggaaagaa gtcgattaag
     851  gtcgatttca tcagaaaaga acgaacgaaa ttcgcaagaa ttcaagtagc
     901  acacttactc gggaagagag cacagcgcga tttatcaact ggaatggaag
     951  aaaaccattt tattgacatt ctcagcgggt actcaggtaa caaaacaacc
    1001  ataaatccag gagtagtttg cgcaggttgg agtggtatag tcgttagaaa
    1051  tggaattcta actcagaagc gaagcagaag tccatcagag gcctttgtaa
    1101  ttagaggcga gcacgaaggc aagttgtacg atgccaggat caaagtcacg
    1151  aagacaatga gtcacaagat tgtacacttt