Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: HZ6.

ACC No: AB179974

Dated: 2004-08-20 | Length: 1527 | CRC: -1979516835

                !!NA_SEQUENCE 1.0
ID   AB179974   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB179974;
XX
SV   AB179974.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: HZ6.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HZ6"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6E5"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20388.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVVQHLRSKISEPVTHEAKCKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFGNIRMDLLEEDELDPNAIRLNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPININEVPKANNEPIPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 493 A; 345 C; 352 G; 337 T; 0 other;

AB179974  Length: 1527  August 31, 2004 08:43  Type: N  Check: 1990  ..

       1  accgatggaa tatctcggca tttcatgagt gagtttggag ctctcgaggc
      51  agttcaccat cagaatacca gcgacatgag caaattcctc aagctcaagg
     101  gcaaatggaa caaaacgcta attacgcgag atgtgttggt actttgtgga
     151  gttcttggag gcggattgtg gatggttgtt caacacctac ggtcaaagat
     201  ttccgaaccc gtaactcacg aagcgaaatg caagaggcaa aggcagaaac
     251  taaagtttcg caacgcccga gacaacaaga tgggtagaga agtgtacgga
     301  gacgatgata ccatcgaaca tttcttcggc gatgcctaca caaagaaagg
     351  gaagagcaag ggtaggacgc gcggtctcgg acacaaaaac aggaagttca
     401  tcaacatgta tgggtttgat cctgaagatt tctctgcagt tcgtttcgtg
     451  gatccactca caggagcgac attggacgac aacccgctca cagacatcac
     501  ccttgtgcaa gagcacttcg gtaatataag aatggacttg cttgaagaag
     551  atgagctgga cccaaacgca atacgtttga ataaaacaat tcaggcctac
     601  tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca
     651  catacctctc aaggtgtgtg atcttcacgc aaccattgct ggattcccag
     701  agcgagaaaa cgaactgagg cagactggaa aggctcagcc cattaacata
     751  aacgaagtgc caaaagccaa taatgaaccc atcccagtag accacgagag
     801  taactccatg ttcagagggt tgcgtgatta caacccaata tcaaacaaca
     851  tttgtcatct tacaaatgtt tcagatggag catcaaactc gttatatgga
     901  gttggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa
     951  taacggtgaa ctcgtaataa aatcacgaca tggtgagttt gtgattaaga
    1001  acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
    1051  atccggttac caaaggacgt cccacccttt ccacagaaat tgggtttcag
    1101  gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc aatttccaaa
    1151  ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg
    1201  gaaaacagtc agttttggaa acactggatt agcacgaaag acggccaatg
    1251  cggaagtcca atggtgagca cgaaagacgg gaaaatactt gggctacaca
    1301  gcctagcaaa cttccagaac tcaatcaatt actttgctgc tttcccagat
    1351  gattttgccg agaagtatct tcataccatt gaagcacacg agtgggtcaa
    1401  gcattggaaa tataacacta gtgccatcag ttggggctct ttgaatatac
    1451  aagcatcgca accgtcaggc ttgttcaaag taagcaagct aatctcagac
    1501  ctcgacagca cggcagtcta cgcacaa