Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: RAD1.

ACC No: AB179976

Dated: 2004-08-20 | Length: 1527 | CRC: -1362679538

                !!NA_SEQUENCE 1.0
ID   AB179976   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB179976;
XX
SV   AB179976.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: RAD1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="RAD1"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6E3"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20390.1"
FT                   /translation="ADGISRHFMSDYGALEAVHHQNTSDMSRFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFGNIRMNLLEEDELDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGDFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 485 A; 334 C; 360 G; 348 T; 0 other;

AB179976  Length: 1527  August 31, 2004 08:43  Type: N  Check: 3041  ..

       1  gccgatggaa tatctcggca tttcatgagt gactatggag ctcttgaggc
      51  agttcaccat caaaacacca gcgacatgag cagattcctc aagcttaagg
     101  gcaaatggaa caaaacgtta atcacgcgag atgtgttggt gctttgtgga
     151  gttcttggag gtggattgtg gatggttatt cagcacctgc ggtcaaagat
     201  ttctgaaccc gtaacccacg aagcgaaagg caagaggcaa agacagaaac
     251  taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga
     301  gatgatgata ccatagagca tttctttggt gatgcctaca caaagaaagg
     351  gaagagcaag ggcaggacac gtggtctcgg acacaaaaac agaaagttca
     401  tcaacatgta tgggtttgat cctgaggatt tctctgcagt tcgtttcgtg
     451  gatccgctca caggagcgac gttggatgac aacccgctca cagacatcac
     501  ccttgtgcaa gagcactttg gtaacataag aatgaacttg ctcgaggagg
     551  atgagctgga ctcaaacgaa atacgtgtga ataagacaat tcaggcctac
     601  tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca
     651  catacctctt aaggtgtgtg atcttcacgc aaccattgct ggattcccag
     701  agcgagaaaa cgaactgagg cagactggaa aggctcagcc tattaacata
     751  gacgaagtgc caagagctaa taatgaactc gttccagtgg accacgagag
     801  taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
     851  tctgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga
     901  gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa
     951  taacggtgaa ctcgtgataa aatcacgaca tggtgatttc gtgattaaaa
    1001  acacaactca gctacatttg ctacctattc cagacagaga tcttctgcta
    1051  atccggttac caaaggacgt cccacccttt ccacagaaat tgggtttcag
    1101  gcaacctgag aaaggtgagc gaatttgcat ggtgggatcc aacttccaaa
    1151  ccaagagcat aacgagtata gtctctgaga ctagtacaat aatgccagtg
    1201  gaaaacagtc agttttggaa acattggatt agtactaaag acggccaatg
    1251  cggaagtcca atggtgagca cgaaagacgg gaaaatactt ggattacaca
    1301  gcctagcaaa cttccagaac tccatcaatt actttgctgc tttcccagat
    1351  gattttgccg agaagtatct tcataccatt gaagcacacg agtgggtcaa
    1401  gcattggaag tataacacta gtgccatcag ttggggctct ttgaatatac
    1451  aagcatcgca accgtcaggt ttgttcaaag taagcaagct aatctcagac
    1501  ctcgacagca cggcagtcta cgcacaa