Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus RNA2 segment, complete sequence, isolate:Fuka4-4.
ACC No: AB188232
Dated: 2011-08-18 | Length: 3044 | CRC: -1423733539
ID AB188232; SV 1; linear; genomic RNA; STD; VRL; 3044 BP.
XX
AC AB188232;
XX
DT 18-AUG-2011 (Rel. 109, Created)
DT 18-AUG-2011 (Rel. 109, Last updated, Version 1)
XX
DE Cucumber mosaic virus RNA2 segment, complete sequence, isolate:Fuka4-4.
XX
KW .
XX
OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
XX
RN [1]
RP 1-3044
RA Natsuaki T.;
RT ;
RL Submitted (17-AUG-2004) to the INSDC.
RL Contact:Tomohide Natsuaki Utsunomiya University, Faculty of Agriculture;
RL Mine-machi 350, Utsunomiya, Tochigi 321-8505, Japan
XX
RN [2]
RA Suzuki M., Yokotsuka H., Matsumoto T., Kosaka Y., Okuda S., Natsuaki T.;
RT "Complete genome comparison of Cucumber mosaic virus parental and
RT attenuated isolates";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3044
FT /organism="Cucumber mosaic virus"
FT /segment="RNA2"
FT /isolate="Fuka4-4"
FT /mol_type="genomic RNA"
FT /country="Japan:Saitama"
FT /isolation_source="cucumber"
FT /db_xref="taxon:12305"
FT 5'UTR 1. .85
FT CDS 86. .2659
FT /codon_start=1
FT /transl_table=1
FT /gene="2a"
FT /product="2a protein"
FT /protein_id="BAK61793.1"
FT /translation="MAFSAPAFSLANLLNGSYGVDTPEDVERLRSEQREEAAAACRNYR
FT PLPAVDVSESVTEDAHSLQTPDGAPAEAVSDEFVTYGAEDYLEKSDDELLVAFETMVKP
FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYSEEC
FT EADDVQMDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER
FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTIAIPPNLNRATDRVDIN
FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN
FT TGSGHKRVGTTKEVLTAIKKRNVDVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN
FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP
FT ATITYHKKSITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKYCLEID
FT LSKFDKSQGEFHLPIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT
FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSQLPPVGDPSKFTTLYNMEA
FT KVMEPSVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD
FT RLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELYYSDRRQC
FT ELINSFCSTEFRVERINSNKQRKKHGIERRRDDKRRTPTGSYGGGEEAETKVSQAESTG
FT TRSQKSQRESAFKSQTVPLPTVLSSGWSGTDRVMPPCERGGVTRA"
FT CDS 2418. .2750
FT /codon_start=1
FT /transl_table=1
FT /gene="2b"
FT /product="2b protein"
FT /protein_id="BAK61794.1"
FT /translation="MELNVGAMTNVELQLARMVEAKKQRRRSHKQNRRERGHKSPSERA
FT RSNLRLFRFLPFYQVDGPELTGLCRHVNVAELPEPEASRLELSAEDHDFDDTDWFAGNE
FT WAEGVF"
FT 3'UTR 2751. .3044
XX
SQ Sequence 3044 BP; 776 A; 674 C; 704 G; 890 T; 0 other;
ab188232 Length: 3044 18-AUG-2011 Type: N Check: 1459 ..
1 gtttatttac aagagcgtac ggttcaaccc ctgcctcccc tgtaaaactc
51 cctagacttt aaaacttctt tctagtatct tttctatggc tttctccgcc
101 cccgcattct cactagccaa tcttttgaat ggtagttacg gtgtcgacac
151 tcccgaggat gtggaacgct tgcgatctga gcaacgcgaa gaggctgccg
201 cggcctgccg taattacagg cccttacccg ctgtggatgt cagcgagagt
251 gtcacagagg acgcgcattc cctccaaact cctgacggag ctcccgctga
301 agcggtgtct gatgagtttg taacttatgg tgctgaagat taccttgaaa
351 aatctgatga tgagctcctt gtcgcttttg agacgatggt caaacccatg
401 cgtatcggac aactatggtg ccctgcgttt aataaatgtt cttttatttc
451 cagcattgct atggccagag ctttgctgtt ggcacctaga acatcccacc
501 gaaccatgaa gtgttttgaa gacctggtcg cggctattta cactaaatct
551 gatttctatt acagtgaaga gtgtgaagcc gacgacgttc agatggatat
601 ctcgtctcgc gatgtacccg gttattcttt cgaaccgtgg tcccgaacgt
651 ctggattcga accgccgccc atttgtgaag cgtgcgacat gatcatgtac
701 cagtgcccgt gttttgattt caatgcttta aagaaatcgt gcgctgagag
751 gactttcgct gatgattatg ttattgaagg tttagatggt gttgttgata
801 atgcgactct gttgtcgaat ttgggtccat ttttggtacc cgtgaagtgt
851 caatatgaaa aatgtccaac gccaaccatc gcgattcctc cgaatttaaa
901 tcgtgccact gatcgtgttg atatcaattt agttcaatcc atttgtgact
951 cgactctgcc cacccatagt aactatgacg actcttttca tcaagtgttc
1001 gtcgaaagtg cagattactc catagatctg gatcatgtta gacttcgaca
1051 gtctgatctt attgcaaaaa ttccagactc agggcatatg ataccggttc
1101 tgaacaccgg gagcggtcac aagagagtag gtacaacgaa ggaggttctt
1151 acagcaatta agaaacgtaa tgttgacgtt ccagagctag gtgattccgt
1201 taatctgtct agattgagta aagctgtggc tgagagattt ttcatttcat
1251 acatcaatgg taactctcta gcatccagca actttgtcaa tgtcgttagt
1301 aatttccacg attacatgga gaagtggaaa tcctcaggtc tttcttatga
1351 tgatcttcca gatcttcatg ctgaaaattt gcagttttat gatcacatga
1401 taaaatctga tgtgaaacct gtggtgagcg acacactcaa tatcgacaga
1451 ccggttccag ctactataac gtatcataag aagagtataa cctcccagtt
1501 ctcaccgtta tttacagcgc tattcgagcg cttccagaga tgccttcgag
1551 aacgtattat tcttcctgtt ggtaagattt catctcttga gatggcagga
1601 tttgatgtca aaaacaagta ctgcctcgag attgatttgt ctaagtttga
1651 taagtctcaa ggtgaatttc acttaccaat tcaggaacat attttgaatg
1701 gtctggggtg tccagctccg ataaccaagt ggtggtgcga tttccaccga
1751 ttctcttaca tcagagatcg tagagctggt gttggtatgc ctattagttt
1801 ccagagacga actggtgatg cattcactta ttttggcaat accattgtca
1851 ccatggctga gtttgcctgg tgttatgaca ccgatcaatt cgaaaaactt
1901 ttattctcag gcgatgactc tctaggattt tcacagcttc cccctgttgg
1951 tgatccgagt aaattcacga ctctttacaa catggaagct aaggtgatgg
2001 aaccatcagt accatatatt tgttcgaagt tcttactctc tgacgagttc
2051 ggtaacacat tttccgttcc agatccattg cgcgaggttc agcggttagg
2101 aacaaagaaa atcccctatt ccgacaatga tgaattcttg tttgctcact
2151 tcatgagctt tgttgatcga ttgaagtttt tggaccgaat gtctcagtcg
2201 tgtatcgatc aactttcgat tttctttgaa ttgaaataca agaagtctgg
2251 ggaagaggcc gctttaatgt taggcgcctt taagaaatat accgctaatt
2301 tccagtccta caaagaactc tattattcag atcgtcgtca gtgcgaattg
2351 atcaattcgt tttgtagtac agagttcagg gttgagcgta taaattccaa
2401 taaacagcga aagaaacatg gaattgaacg taggcgcgat gacaaacgtc
2451 gaactccaac tggctcgtat ggtggaggcg aagaagcaga gacgaaggtc
2501 tcacaagcag aatcgacggg aacgaggtca caaaagtccc agcgagagag
2551 cgcgttcaaa tctcagactg ttccgcttcc taccgttcta tcaagtggat
2601 ggtccggaac tgacagggtt atgccgccat gtgaacgtgg cggagttacc
2651 cgagcctgag gcctctcgtt tagagttatc ggcggaagac catgattttg
2701 acgataccga ttggttcgcc ggtaacgaat gggcggaagg tgtattctga
2751 acccttcctt cttctccctc cggttttctg tggcgggagc tgagttggca
2801 gtatcgctat aaactgtctg aagtcactaa acacattgtg gtgaacgggt
2851 tgtccatcca gcttacggct aaaatggtca gtcgtagaga aatctacgcc
2901 agcaaactta caagtttctg aggcaccttt gaaaccatct cctaggtttc
2951 ttcggaagga cttcggtccg tgtacttcta gcacaacgtg ctggttttag
3001 ggtacgggtg cccactttcg tggggggcct ctaaaaggag acca