Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR27.

ACC No: AB188879

Dated: 2004-12-03 | Length: 1086 | CRC: 329740209

                !!NA_SEQUENCE 1.0
ID   AB188879   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188879;
XX
SV   AB188879.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR27.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GBR27"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689W7"
FT                   /db_xref="UniProt/TrEMBL:Q689W7"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38698.1"
FT                   /translation="MAAVTFASAITNATTNKPALTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEVARPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVSRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGPSANVIEAEEVRTKWPLHKTPSMKERTVHRTCKMND
FT                   QGIDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARTKVTRTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 350 A; 237 C; 288 G; 211 T; 0 other;

AB188879  Length: 1086  December 7, 2004 09:04  Type: N  Check: 8893  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca ccaccaacaa
      51  accagcactc accggaatgg tacagtttgg gagtttccca ccaatgccat
     101  tgcgatccac caccgtcacc acagtcgcca cttcagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgag acctagatcg
     301  aatgccgtgt tgagaatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggctagtt tgaagagaag ctcgtatgga attgctgaga
     401  acgagaaggt tgtaatgaca actcgcggcg tcagcaagat agtatccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggagaggc gtagagcgca
     501  gcaaccaatt atactaaagt gggagcccaa attgagcggg atctcaatcg
     551  gaggagggcc ctctgcgaac gtgatcgaag cagaagaggt tcgcacaaag
     601  tggccgcttc ataagacacc gtcaatgaag gagaggacgg tgcacagaac
     651  atgcaagatg aacgaccaag gaattgacat gttgacacga tctctggtta
     701  agattttcaa gactaagagt gccaacattg agtacatcgg aaagaagtcg
     751  attaaggtcg atttcatcag aaaagaacgg acgaaattcg caagaatcca
     801  agtagcacac ttactcggga agagagcaca gcgcgactta tcaactggaa
     851  tggaagaaaa ccattttatt gacattctca gtggatactc aggtaacaaa
     901  acaaccataa atccaggagt agtttgcgca ggttggagtg gcatagtcgt
     951  tagaaatgga attctaactc agaaacgaag cagaagtcca tcagaggcct
    1001  ttgtaattag aggtgagcac gaaggcaagt tgtacgatgc caggaccaaa
    1051  gtcacgagga caatgagtca caagattgtg cacttt