Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE18.
ACC No: AB188918
Dated: 2004-12-03 | Length: 1527 | CRC: 1477392742
!!NA_SEQUENCE 1.0
ID AB188918 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188918;
XX
SV AB188918.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE18.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="CZE18"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689S8"
FT /db_xref="UniProt/TrEMBL:Q689S8"
FT /product="polyprotein"
FT /protein_id="BAD38737.1"
FT /translation="TDGISRSFMRDYGALEAVHHQNTNDMSKFLQLKGKWNKTLITRDV
FT LVICGVLGGGIWMIIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGEAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT TDITLVQKHFGDIRMDLLGEDGLDPNEIRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPERENELRQTGKAQPISIDEVPRANNELIPVDHESNSMFRGLRDYNPIS
FT NNICHLTNVSEGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWVKHWKYNTSAISWGSLNIQAAQPSGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 501 A; 350 C; 362 G; 314 T; 0 other;
AB188918 Length: 1527 December 7, 2004 09:04 Type: N Check: 4616 ..
1 accgacggga tctctcggag tttcatgagg gactacggag cactcgaggc
51 agttcaccat caaaacacca acgacatgag caagtttctg cagctcaagg
101 gcaagtggaa taaaacgctg atcacgagag atgtgctggt gatctgcgga
151 gtacttggag gtggaatatg gatgatcatt caacacttac ggtcaaaaat
201 ttctgaaccc gtaactcacg aagcaaaagg caagaggcaa agacagaaac
251 tgaagttccg caatgcccga gacaacaaaa tgggtagaga agtgtatggg
301 gatgatgaca ccatagagca tttctttgga gaagcttaca caaagaaagg
351 aaagagcaaa ggcaggacac gtggcatcgg gcataaaaac aggaagttca
401 tcaatatgta tgggtttgat cctgaagatt tctctgcagt tagattcgta
451 gatccactca caggggcgac actagacgat aacccattca cggacatcac
501 ccttgtgcaa aagcactttg gtgacataag aatggattta ctcggagagg
551 acgggctgga cccaaatgag atacgaatga acaagacaat ccaggcctac
601 tacatgaaca ataaaacagg caaggctctg aaggtagact tgacaccaca
651 catacctctc aaggtgtgtg accttcacgc aaccattgct ggattcccag
701 agagagagaa tgaactgagg caaactggaa aggctcagcc tatcagtata
751 gacgaagtgc cgagagccaa caacgaactc atcccagtgg accacgagag
801 caactccatg ttcagagggt tgcgcgacta caacccaatc tcgaataaca
851 tctgccatct cacaaatgtg tcagaaggag catcaaactc gttatatgga
901 gtcggtttcg gaccactcat attaacgaac cgacatctct ttgagcggaa
951 caacggcgag cttgtaataa agtcacgaca tggtgagttt gtgattaaaa
1001 acacaactca gctacatcta ctcccaatac cagatagaga tcttttgcta
1051 atccgattgc caaaggacat cccacctttt ccgcagaaac taggcttcag
1101 acaacccgaa aagggtgagc gaatttgcat ggtaggatcc aatttccaga
1151 ctaagagcat aacgagtata gtctctgaga ctagtacgat aatgccagtg
1201 gagaacagtc agttttggaa acactggatt agcactaaag acggccaatg
1251 cggaagtcca atggtgagca caaaggacgg gaaaatactc gggctacaca
1301 gcctggcgaa cttccagaac tccatcaatt actttgctgc tttcccagat
1351 gactttgccg agaagtatct tcacacaatt gaagcacacg agtgggttaa
1401 gcactggaag tataacacta gcgccatcag ttggggctct ctgaatatac
1451 aagcagcgca accatcaggc ttgttcaaag taagcaagtt aatctcagac
1501 ctcgacagca cggcagtcta cgcacaa