Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: FRD1.

ACC No: AB188986

Dated: 2004-12-03 | Length: 864 | CRC: 355951236

                !!NA_SEQUENCE 1.0
ID   AB188986   standard; genomic RNA; VRL; 864 BP.
XX
AC   AB188986;
XX
SV   AB188986.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: FRD1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="FRD1"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689L0"
FT                   /db_xref="UniProt/TrEMBL:Q689L0"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38805.1"
FT                   /translation="AGETLDAGLTEEQKQAEKEKKEREKAEKERERQRQLALKKGKDVA
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVQGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 283 A; 176 C; 237 G; 168 T; 0 other;

AB188986  Length: 864  December 7, 2004 09:04  Type: N  Check: 7816  ..

       1  gcaggtgaaa cgcttgatgc aggtttgacg gaagagcaaa agcaggcaga
      51  gaaggagaag aaagagagag agaaggcgga aaaggagcga gagaggcaaa
     101  ggcagttggc actcaagaaa ggcaaggatg ttgcacaaga agagggaaaa
     151  cgcgacaagg aagtaaacgc tggaacctct ggaactttca gtgtacctag
     201  actcaagagt ctgacaagca agatgcgtgt gccaagatac gagaaaagag
     251  tggctctgaa ccttgatcat ctaatcctat acacgccgga gcagacggat
     301  ctatccaaca cccgttcaac gcgaaagcag tttgacacat ggtttgaagg
     351  tgtgatggct gattacgaac taacggagga caaaatgcaa atcattctca
     401  atggtttaat ggtctggtgt attgagaacg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggtgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgca tttgacttct atgaaatgac ttctaggact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttactgg
     851  gcgttcaggg gtta