Sequence of DPV Tomato leaf curl Java virus
Tomato leaf curl Java virus-[Magelang] C1, C4, V1, V2 genes for replication-associated protein, putative C4 protein, capsid protein, putative V2 protein, partial and complete cds, clone: ToMag-2.
ACC No: AB189848
Dated: 2009-01-13 | Length: 1562 | CRC: -393381707
ID AB189848; SV 1; linear; genomic DNA; STD; VRL; 1562 BP.
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AC AB189848;
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DT 08-MAR-2005 (Rel. 83, Created)
DT 13-JAN-2009 (Rel. 99, Last updated, Version 4)
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DE Tomato leaf curl Java virus-[Magelang] C1, C4, V1, V2 genes for
DE replication-associated protein, putative C4 protein, capsid protein,
DE putative V2 protein, partial and complete cds, clone: ToMag-2.
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KW .
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OS Tomato leaf curl Java virus-[Magelang]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-1562
RA Ikegami M.;
RT ;
RL Submitted (05-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL Contact:Masato Ikegami Tohoku University, Plant Pathology, Departemen of
RL Life Science; 1-1 Tsutsumidori-Amamiyamachi, Sendai, Miyagi 981-8555, Japan
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RN [2]
RA Sukamto, Kon T., Hidayat S.H., Ito K., Hase S., Takahashi H., Ikegami M.;
RT "Begomoviruses Associated with Leaf Curl Disease of Tomato in Java,
RT Indonesia";
RL J. Phytopathol. 153:562-566(2005).
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FH Key Location/Qualifiers
FH
FT source 1. .1562
FT /organism="Tomato leaf curl Java virus-[Magelang]"
FT /host="Lycopersicon esculentum"
FT /mol_type="genomic DNA"
FT /country="Indonesia:Magelang, Dukun"
FT /clone="ToMag-2"
FT /db_xref="taxon:292476"
FT CDS complement(<1. .767)
FT /codon_start=1
FT /transl_table=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:Q5CCZ0"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:Q5CCZ0"
FT /protein_id="BAD90865.1"
FT /translation="MAPPKRYKIQAKNYFLTYPQCSLTKEEALSQIQALDTPTNKKYIK
FT ICRESHEDGSPHLHVLIQFEGKYVCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDFVLQFH
FT NLNANLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVSDAAARPWRPISIVIEGD
FT SRTGKTMWARSLGPRNYLCGHLDLSPKVYSNDA"
FT CDS complement(320. .610)
FT /codon_start=1
FT /transl_table=1
FT /gene="C4"
FT /product="putative C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:Q5CCY9"
FT /protein_id="BAD90866.1"
FT /translation="MGALISTCLSSSKENTSARITDSSTLYPLPGQHISIRTFRELNPA
FT PTSSPISTRTETPSNGVSFRSMDDLQEEDNRQPMMLTPRHLTAAVSQRLLM"
FT CDS 1045. .1395
FT /codon_start=1
FT /transl_table=1
FT /gene="V2"
FT /product="putative V2 protein"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:Q5CCY8"
FT /protein_id="BAD90867.1"
FT /translation="MWDPLLNEFPETVHGLRCMLSVKYLQLVEATYSPDTIGYDLVRDL
FT ISVIRARNYVEASRRYSHFHSRLEGTSPSELRHTRDEPCCCPHCPRHQQKKDMDQQAHV
FT SQAQTVQNVQKP"
FT CDS 1205. .>1562
FT /codon_start=1
FT /transl_table=1
FT /gene="V1"
FT /product="capsid protein"
FT /db_xref="GOA:Q5CCY7"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q5CCY7"
FT /protein_id="BAD90868.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDTPAMSRVAAPTVLVTNKRRTW
FT TNRPMYRKPRLYRMYRSPDVPKGCEGPCKVQSFESRHDVSHVGKVCCITDVTRGLGLTH
FT RTGKRFCVKSVYIMG"
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SQ Sequence 1562 BP; 422 A; 344 C; 341 G; 455 T; 0 other;
ab189848 Length: 1562 13-JAN-2009 Type: N Check: 2054 ..
1 caagcatcat tactgtacac ctttggactc agatctagat gaccgcacag
51 ataattacgt ggtcccagtg atctggccca cattgtttta cctgtacgac
101 tatcaccttc tatcacaata ctgataggtc tccatggccg cgcagcggca
151 tcactcacgt tctcggaaac ccattcttca agttcttctg gaacttgatc
201 gaaagaagaa gacaaaaaag gacaaacaaa aacctctaaa ggaggtgcaa
251 aaatcctatc taaattagca tttaaattat gaaattgtaa aacaaaatct
301 ttaggagcta actccttaat tacattaaga gcctctgact tactgccgct
351 gttaagtgcc tgggcgtaag catcattggc tgtctgttgt cctcctcttg
401 cagatcgtcc atcgatctga aactcacccc attcgagggt gtctccgtcc
451 ttgtcgatat aggacttgac gtcggagctg gatttagctc cctgaatgtt
501 cggatggaaa tgtgctgacc tggaagggga tacaaggtcg aagaatctgt
551 tattcgtgca gacgtatttt ccttcgaact ggataagcac gtggagatga
601 gggctcccat cttcgtgcga ttctctgcag atttttatgt attttttatt
651 agttggtgta tctagggctt gaatttggga aagtgcttct tctttagtaa
701 gagagcactg tggataagtg aggaaataat ttttggcttg tattttataa
751 cgtttgggag gagccattga cttggtcaat tggagacatt catagttctc
801 tgtcaattgg agacaggaga caatatatag gtgtctccaa atggcatagt
851 cgtaatttct catagaaatt caaactttaa tttgaaatcc aaaagcggcc
901 atccgtataa tattaccgga tggccgcgat ttttttaaag tggtcccctc
951 cactaagaaa tgtcccccaa tcagaacgcg ccctcaaagc taaattatta
1001 actggtcccc tatttatact tggtcaccaa gtataatttt aaacatgtgg
1051 gatccactct taaacgaatt cccagagact gttcacggtc tacggtgtat
1101 gctatccgta aaatatcttc aattagttga agctacgtat tctcctgata
1151 ctattgggta cgatcttgta cgcgatttaa tttcagtaat tcgtgctcgc
1201 aattatgtcg aagcgtcccg ccgatatagt catttccact cccgcctcga
1251 aggtacgtcg ccgtctgaac ttcgacacac ccgcgatgag ccgtgttgct
1301 gcccccactg tcctcgtcac caacaaaaga aggacatgga ccaacaggcc
1351 catgtatcgc aagcccagac tgtacagaat gtacagaagc cctgatgttc
1401 ccaaaggttg tgaaggccca tgtaaggtcc agtcttttga gtccaggcat
1451 gatgttagtc atgtgggtaa ggtctgttgt ataactgacg tcactagggg
1501 tttaggtttg acacatagga cgggtaagag gttttgcgtt aagtccgtct
1551 acataatggg ca