Sequence of DPV Potato virus X
Potato virus X genomic RNA, complete genome, strain: TO.
ACC No: AB196001
Dated: 2010-07-26 | Length: 6435 | CRC: -180205632
ID AB196001; SV 1; linear; genomic RNA; STD; VRL; 6435 BP.
XX
AC AB196001;
XX
DT 26-JUL-2010 (Rel. 105, Created)
DT 26-JUL-2010 (Rel. 105, Last updated, Version 1)
XX
DE Potato virus X genomic RNA, complete genome, strain: TO.
XX
KW .
XX
OS Potato virus X
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-6435
RA Namba S., Komatsu K., Oshima K., Yamaji Y.;
RT ;
RL Submitted (02-DEC-2004) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shigetou Namba The University of Tokyo, Graduate School of
RL Agricultural and Life Sciences, Department of Agricultural and
RL Environmental Biology, Laboratory of Plant Pathology; 1-1-1 Yayoi,
RL Bunkyo-ku, Tokyo 113-8657, Japan
XX
RN [2]
RA Komatsu K., Kagiwada S., Takahashi S., Mori T., Yamaji Y., Hirata H.,
RA Ozeki J., Yoshida A., Suzuki M., Ugaki M., Namba S.;
RT "Phylogenetic Characteristics, Genomic Heterogeneity and Symptomatic
RT Variation of Five Closely Related Japanese Strains of Potato Virus X";
RL Virus Genes 31:99-105(2005).
XX
FH Key Location/Qualifiers
FH
FT source 1. .6435
FT /organism="Potato virus X"
FT /strain="TO"
FT /mol_type="genomic RNA"
FT /country="Japan:Nagoya"
FT /db_xref="taxon:12183"
FT CDS 85. .4455
FT /codon_start=1
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA dependent RNA polymerase"
FT /protein_id="BAJ12051.1"
FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV
FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM
FT RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPGYIVETFQ
FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQ
FT WLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR
FT TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS
FT SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLSG
FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPKEVSDVEEMESLFSDGDLL
FT DCFTRMPAYAVNAEEDLAAIRKAPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHKKHSR
FT EVKHQAAKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSDARQELILPTT
FT KPVPARWEDASFPDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE
FT IQRDRSGTMIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPVTIPLDLLRARDYGS
FT DVKNKRIGAITKTQAASWGEYLTGKIESLTERKVATCVIHGAGGSGKSHAIQKALREIG
FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIE
FT ALICFYSKIRLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD
FT LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTK
FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV
FT RGQALREYEPAEAEPIREPEPQTHMRVENEESVLEEYKEELLEKFDREIHSESHGHSNC
FT VQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA
FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV
FT TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS
FT AWALNNWNFGRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQI
FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF
FT HRLEDKLLLKSKPVITQQRKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC
FT QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL"
FT CDS 4486. .5166
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp1"
FT /product="Triple gene block protein 1"
FT /protein_id="BAJ12052.1"
FT /translation="MDILIISLKSLGYSRTHKSLDSGPLVVHAVAGAGKSTALRKLILR
FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRNSYQALFADPYQA
FT PEFSLEPHFYLETSFRVPRKVADLIAGCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI
FT DEESETTLSRHGVEFVKPCQVTGLEFKVVTIVSAAPIEEIGQSTAFYNAITRSKGLTYV
FT RAGT"
FT CDS 5147. .5494
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp2"
FT /product="Triple gene block 2"
FT /protein_id="BAJ12053.1"
FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN
FT IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNH
FT TCACGNNHSSH"
FT CDS 5427. .5639
FT /codon_start=1
FT /transl_table=1
FT /gene="TGBp3"
FT /product="Triple gene block 3"
FT /protein_id="BAJ12054.1"
FT /translation="MEVNTYLNAIILVLVVTIIAVISTSLVRTEPCVIKITGESITVLA
FT CKLDAETIRAIADLKPLSVERLSFH"
FT CDS 5650. .6363
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="BAJ12055.1"
FT /translation="MSAPASTTQATGSTTSTTTETAGATPATASGLFTIPDGDFFSTAR
FT AIVASNAVATNEDLSKIEAIWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY
FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD
FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI
FT TGTTTAEAVVTLPPP"
XX
SQ Sequence 6435 BP; 1968 A; 1526 C; 1481 G; 1460 T; 0 other;
ab196001 Length: 6435 26-JUL-2010 Type: N Check: 9873 ..
1 gaaaactaaa ccatacacca ccaacacaac caaacccacc acgcccaatt
51 gttacacacc cacttgaaaa agtaagtcta acaaatggcc aaagtgcgcg
101 aggtttacca atcctttaca gactccacca caaaaactct catccaagat
151 gaggcttata gaaatattcg tcccatcatg gaaaaacaca aactagctaa
201 cccgtacgct caaacggttg aagcagctaa tgatctagag gggttcggca
251 tagctaccaa tccctatagc attgaattgc atacacatgc agccgctaag
301 accatagaga ataaacttct agaggtgctt ggttccatcc taccacaaga
351 acctgttaca tttatgttcc ttaaacccag aaagctaaac tacatgagaa
401 gaaacccgag gattaaggac attttccaca atgttgccat cgagccgaga
451 gacgtagcaa ggtaccccaa ggaaacaata attgacaaac ttacagagat
501 cacaacggat acagcataca ttagtgacac tctgcacttc ttggatccgg
551 gctacatagt ggagacattc caaaactgcc caaaattgca aacattgtat
601 gcgaccttag ttctccccgt tgaggcagcc ttcaaaatgg aaagcactca
651 cccgaacata tacagcctca aatacttcgg ggatggtttc cagtatatac
701 caggcaacca tggtggtgga gcataccatc atgaattcgc tcatttacaa
751 tggctcaaag tgggaaagat caagtggagg gaccccaagg atagctttct
801 cggacatctc aactacacga ctgagcaggt tgagatgcac acagtgacag
851 tacagttaca ggaatcgttc gcggcgaacc acttgtactg catcaggaga
901 ggagacttgc ttacaccgga ggtgcgcacc tttggccaac ctgacaggta
951 tgtgatccca ccacagatct ttctcccaaa agtccacaac tgcaagaagc
1001 cgattcttaa gaaaactatg atgcagctct tcttgtatgt taggacagtc
1051 aaggtcgcaa aaaattgtga catttttgcc aaagtcagac aattaatcaa
1101 atcatctgac ctggacaaat attctgctgt ggaactggtt tacttagtaa
1151 gctatatgga gttccttgcc gatttacaag ctaccacctg cttctcagac
1201 acactttctg gtggcttgct aacaaagacc cttgcaccgg tgagggcttg
1251 gatacaagag aaaaagatgc aactgtctgg tcttgaggac tacgcgaaat
1301 tagtcaaagc agttgatttc cacccggtgg atttttcctt taaagtggaa
1351 acttgggact ttagattcca ccccctgcaa gcgtggaaag ccttccgacc
1401 aaaggaagtg tcggatgtgg aggaaatgga aagtttgttc tcagatgggg
1451 acctgcttga ttgcttcacc agaatgccag cttatgcagt aaacgcagag
1501 gaagatttag ctgcaatcag gaaagcgcct gagatggatg tcggccaaga
1551 agttaaagaa cctgcaggag acagaaatca atactcgaac cctgcagaaa
1601 ctttcctcaa caagctccac aagaagcaca gtagggaggt gaaacatcag
1651 gccgcaaaga aagctaaacg cttagctgag atccaggagt ccatgagagc
1701 tgaaggcgag gccgaatcaa atgagatgag cgggggtatg ggagcaatac
1751 ctagcaacgc cgaacttccc agcacgagtg atgccagaca agagctcata
1801 ctcccaacca ctaaacctgt tcctgcaagg tgggaagatg cttcatttcc
1851 agattctagt gtggaagagg agcaagtgaa actccctgga aaagaagccg
1901 ttgagacagc aacgcaacaa gtcatcgaag gactcccttg gaagcactgg
1951 attcctcaac taaatgctgt tggattcaag gcgctggaaa ttcagaggga
2001 taggagtgga acaatgatca tgcccatcac agaaatggtc tccgggttgg
2051 aaaaggagga cttcccggaa ggaactccaa aagagttggc acgagaattg
2101 ctcgctatga acaggagccc tgtcaccatc cctttagacc tgcttagagc
2151 cagagactac ggcagtgatg tgaagaacaa gagaattggt gccatcacaa
2201 agacacaagc cgcaagttgg ggcgagtacc taacaggaaa aatagagagc
2251 ctgaccgaga ggaaagttgc gacttgtgtc attcatggag ctggaggctc
2301 tgggaaaagt catgccatcc agaaggcatt aagagaaatt ggcaagggct
2351 cggacatcac tgtagtcctg ccgaccaatg agctgcgact agattggagt
2401 aagaaagtgc ccaacactga accatatatg ttcaagacct atgaaaaggc
2451 gttgattggg ggaacaggca gtatagtcat ctttgacgac tactcaaaac
2501 ttcctcccgg ttacatagaa gccttaatct gcttctactc taaaatcagg
2551 ctagtcattc taacaggaga tagcagacag agcgtctacc atgaaactgc
2601 tgaggacgcc tccatcaggc atttgggacc agcgacagag tacttctcaa
2651 aatactgccg atactatctc aatgctacac accgcaacaa gaaagacctt
2701 gcgaacatgc ttggtgtcta cagtgagaga acgggagtca ccgaaatcag
2751 catgagcgct gagttcctag aagggatccc aactttggtg ccctcggatg
2801 aaaagaggag attgtacatg ggcaccggga ggaatgacac gttcacatat
2851 gctggatgcc aggggctaac taagccgaaa gtacaaatag tgctggacca
2901 caacacccaa gtgtgcagcg cgaatgtgat gtacacggca ctctctagag
2951 ccaccgacag gattcacttc gtgaacacaa gtgcaaactc ttcggccttc
3001 tgggaaaagt tagacagcac cccctatctc aagactttcc tatcagtggt
3051 gagaggacaa gcactcaggg agtacgagcc ggcagaggca gagccaattc
3101 gagagcctga gccccagaca cacatgcgtg tcgagaatga ggagtccgtg
3151 ctagaagagt acaaagagga actcttggaa aagtttgaca gagagatcca
3201 ttctgaatcc catggtcatt caaactgtgt ccagacggaa gacacaacca
3251 ttcagctgtt ttcgcatcaa caggcaaaag atgagaccct cctttgggcg
3301 actatagatg cgcggctcaa gaccagcaat caagagacaa acttccgaga
3351 attcttgagc aagaaagaca ttggggatgt tctgtttttg aactaccaaa
3401 aagctatggg tttgcccaaa gagcgtattc ctttctcaca agaggtctgg
3451 gaagcttgtg cccacgaagt gcaaagcaag tacctcagta agtcaaagtg
3501 caacttgatc aatgggactg tgagacagag cccagacttt gatgaaaaca
3551 aaattatggt attcctcaag tcgcaatggg tcacaaaggt ggaaaagtta
3601 ggtctaccca agattaagcc aggtcaaact atagcagctt tttatcagca
3651 gactgtgatg ctctttggaa ctatggctag gtacatgcga tggttcagac
3701 aggctttcca gccaaaagaa gtcttcataa actgtgagac cacgccagaa
3751 gacatgtctg catgggcctt gaacaactgg aattttggca gacctagctt
3801 ggctaatgat tacacagctt tcgaccagtc tcaggatgga gctatgctgc
3851 aatttgaggt gctcaaagct aagcaccact gcataccaga ggaaatcatc
3901 caagcataca tagacattaa gaccaatgca cagattttcc taggcacatt
3951 atcaattatg cgcctgactg gtgaaggccc cacttttgat gcaaacactg
4001 agtgcaacat agcttacacc catacaaagt ttgacatccc agccggaact
4051 gctcaagttt atgcaggaga cgactctgca ctggattgcg ttccagaagt
4101 gaaacatagt ttccacaggc ttgaagataa attgctcctc aagtcaaagc
4151 cagtaatcac gcaacaaagg aaaggcagtt ggcctgagtt ttgtggttgg
4201 ctgattacac caaaaggggt gatgaaagac ccaattaagc ttcatgttag
4251 cttaaaattg gccgaagcta agggtgaact caagaaatgt caagattctt
4301 atgaaattga tctgagctat gcctatgacc acaaggactc tctgcatgac
4351 ctattcgatg agaaacagtg tcaggcacat acactcactt gcagaacact
4401 aatcaagtca gggagaggca ctgtctcact tccccgcctc agaaactttc
4451 tttaaccgtt aagttacctt agagatttga ataagatgga tattctcatc
4501 attagtttga aaagtttagg ttattctagg actcataaat ctttagattc
4551 aggacctttg gtagtacatg cagtagccgg agccggtaag tccacagccc
4601 taaggaagtt gatcctcaga caccctacat tcaccgtgca tacactcggt
4651 gtccctgaca aggtgagtat cagaactaga ggcatacaga agccaggacc
4701 cattcctgag ggcaatttcg caatccttga tgagtacact ttggacaaca
4751 ccacaaggaa ttcataccag gcactttttg ccgaccctta tcaggcacct
4801 gagtttagcc tagagcccca cttctacttg gaaacatcat ttcgagttcc
4851 gaggaaagtg gcagatttga tagcaggctg tggtttcgat ttcgagacca
4901 attcacaaga agaagggcac ttagagatca ctggtatatt caaagggccc
4951 ctacttggga aggtgatagc cattgacgag gagtctgaga caacactgtc
5001 caggcatggt gttgagtttg ttaagccctg ccaagtgact ggacttgaat
5051 tcaaagtagt caccatcgtg tctgccgcgc caatagagga gattggccag
5101 tccacagctt tctacaacgc catcaccagg tcaaagggat tgacatatgt
5151 ccgcgcaggg acatagactg accgctccgg tcaactctga aaaagtgtac
5201 atagtattag gtctatcatt tgctttagtt tcaattacct ttctgctttc
5251 tagaaatagt ttaccccacg tcggtgacaa cattcacagc ctgccacacg
5301 gaggagctta cagagacggc accaaagcga tcttgtacaa ctccccaaat
5351 ctagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc
5401 cgttttgcta ctgactttac tgatctatgg aagtaaatac atatctcaac
5451 gcaatcatac ttgtgcttgt ggtaacaatc atagcagtca ttagtacttc
5501 cttagtgagg actgaacctt gtgtcatcaa gattaccgga gaatcaatca
5551 cagtgttggc ctgtaaatta gatgcagaaa ccattagagc tattgccgat
5601 ctcaagccac tctccgttga acggttaagt ttccattgat actcgaaaga
5651 tgtcagcacc agctagcaca acacaggcca cagggtcaac tacctcaact
5701 accacggaaa ctgcaggcgc aactcctgcc acagcttcag gactgttcac
5751 tatcccggat ggggatttct ttagtacagc ccgtgccata gtagccagca
5801 atgctgtcgc aacaaatgag gacctcagca agattgaggc tatttggaag
5851 gacatgaaag tgcccacaga cactatggca caggctgctt gggacttagt
5901 cagacactgc gccgatgtgg gttcatctgc tcaaacagaa atgatagata
5951 caggtcccta ttccaacggc atcagcagag ctagattggc agcagcaatt
6001 aaagaggtgt gcacacttag gcaattttgc atgaagtatg ccccagtagt
6051 atggaactgg atgttaacta acaacagtcc acctgctaac tggcaagcac
6101 aaggtttcaa gcctgagcac aaattcgctg cattcgactt cttcaatgga
6151 gtcactaacc cagctgccat catgcccaaa gaggggctta tccggccacc
6201 gtctgaagct gaaatgaatg ctgcccaaac tgctgccttt gtgaagatta
6251 cgaaggccag ggcacaatcc aacgactttg ccagcctaga tgcagctgtc
6301 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct
6351 accaccacca taactacgtc tacataaccg acgcctaccc cagtttcata
6401 gtattttctg gtttgattgt atgaataata taaat