Sequence of DPV Cymbidium mosaic virus
Cymbidium mosaic virus genomic RNA, complete genome.
ACC No: AB197937
Dated: 2005-07-06 | Length: 6226 | CRC: -1749005382
!!NA_SEQUENCE 1.0
ID AB197937 standard; genomic RNA; VRL; 6226 BP.
XX
AC AB197937;
XX
SV AB197937.1
XX
DT 06-JUL-2005 (Rel. 84, Created)
DT 06-JUL-2005 (Rel. 84, Last updated, Version 1)
XX
DE Cymbidium mosaic virus genomic RNA, complete genome.
XX
KW .
XX
OS Cymbidium mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Potexvirus.
XX
RN [1]
RP 1-6226
RA Tanno F., Itoh K.;
RT ;
RL Submitted (05-JAN-2005) to the EMBL/GenBank/DDBJ databases.
RL Fuminori Tanno, Niigata University, Center for Transdisciplinary Research;
RL Ikarashi-2, 8050, Niigata, Niigata, 950-2181, Japan
RL (E-mail:tanno@agr.niigata-u.ac.jp, Tel:81-25-262-7522, Fax:81-25-262-7522)
XX
RN [2]
RA Tanno F., Itoh K.;
RT "Nucleotide sequence of a Japanese isolate of Cymbidium mosaic virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6226
FT /db_xref="taxon:12178"
FT /mol_type="genomic RNA"
FT /organism="Cymbidium mosaic virus"
FT CDS 73. .4326
FT /codon_start=1
FT /transl_table=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="BAE06191.1"
FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE
FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL
FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD
FT SPKLKILLATLVLPVEALHRHPSLYPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW
FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ
FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH
FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPVKNKIRELVQLFTGMDQFNQLLKALDW
FT QTFSYAMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKH
FT DPSNPETEDSEDDTDSVDFNLPPTHDLPPNFDPLDKGKSIIVDTDNPSTSTAPAVTFAA
FT GINSSAPTNISFGSFTHEAEATPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC
FT PITEIKTVPHCPFPDKVPDDCVLALKSIKRFATKMTMLSSRASAYTSDIKNSRTGKLLP
FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE
FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII
FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG
FT KLTVSFSTAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT
FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA
FT PEPEVREPAAPKTHIPVENTSGLRTSALELPEKHSREIFNKAHGFSNAIQGDGVAPMFQ
FT HQQAKDETLFKATIDARLSITDPDKNKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP
FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK
FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSHKQI
FT AHTNDFTAFDQSQDAAMLQFEIIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG
FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK
FT PLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKGARSYALDAKYAY
FT DLGDRIHEVLNADEMTSHFNVIRQLHQLHQQDVLVPPETTVATAVKSQPDVEDLWLRAL
FT SFPDWTDRAQLLKRG"
FT CDS 4332. .5033
FT /codon_start=1
FT /transl_table=1
FT /gene="TGB 1"
FT /product="triple gene block 1"
FT /protein_id="BAE06192.1"
FT /translation="MELAYLIRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH
FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYQALDYSRCLALFGDPLQ
FT LPHSLQPHYYSSRTHRYGPKLTSLLNDLFHLSITSLAPVDSLDYADPFAVDPSGFTIAD
FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRRCVVLRPLSTFIALTRAKGNLTI
FT FDFNARFSSTT"
FT CDS 5008. .5346
FT /codon_start=1
FT /transl_table=1
FT /gene="TGB 2"
FT /product="triple gene block 2"
FT /protein_id="BAE06193.1"
FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF
FT PSGGQYKDGTKQINYCPPTHAKYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP
FT CCNTYHHP"
FT CDS 5201. .5476
FT /codon_start=1
FT /transl_table=1
FT /gene="TGB 3"
FT /product="triple gene block 3"
FT /protein_id="BAE06194.1"
FT /translation="MLSTRNILTTSGLPPPPPSSSLSAYIFPTILAIIFAVFALVAIHI
FT TTPEPFCTIHIDGASITITNCPDPAAILDKVAIGPWRGLSYHNNLK"
FT CDS 5479. .6150
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="BAE06195.1"
FT /translation="MGEPTPTPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK
FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF
FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP
FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT
FT E"
XX
SQ Sequence 6226 BP; 1664 A; 1818 C; 1212 G; 1532 T; 0 other;
AB197937 Length: 6226 July 12, 2005 08:41 Type: N Check: 1073 ..
1 gaaaaccaaa cctcacgtct actccgctat ccgagcgaaa tagcagcccc
51 agcataggca atatcgcgct ccatggcccg agtacgtgac acccttgaca
101 ggctccgtga tccgtcggtc cttacctcaa ttaacgagga agcccaccga
151 cacatccgcc ctgtccttgc ctcggcactc gtaaactgcc cttacgcgtt
201 gaccgaggaa gaggccgact gtctcgaaaa tctcggcgtg acagtcaacc
251 ccttcgccat ccaaacgcat acacatgctg cagctaaaac tgttgaaaat
301 cgcatgttgg aaattgttgg cacccacctt cctaaagaac cctccacctt
351 catattcctt aagcggagca agcttcgtta cctacgacgc gccgccaaca
401 acaaagacat atttcaaaac caacacattg agcctaaaga cttattgcgt
451 tacgatgacg agtcttgtga agtaatgcca gaatgctcca caagcacagc
501 ctacatcagc gatgctctcc atttcttgag ctacgctcag cttgggaaaa
551 tattccagga ttctcccaag ctgaaaattc tgttggcaac cctggtcctc
601 cccgtggaag ccctccatag acacccatct ctttaccctg ccatctatac
651 tttgaactac cataaagatg gctttgaata tatacccggc aatcacgccg
701 gaggtgccta cttccacgag tactccactc tgcagtggtt gactctcggg
751 aaactaatta tcaacgatcc tttgaaagta aagaaacccc ttactcttac
801 tgtacagcta atagaaagtc taggggctaa ccatctttta cttatcaccc
851 gaggggatct tcgcacaccc aaactacgga cattcgctaa agatacccat
901 gttctactac cacaaatatt ccatcctaag ggtatgaatg cgaacaaacc
951 attgtccaaa cgtagagcta tgcagttgtg gctctacgcc aaatctgtta
1001 aagaggtgag cgaacgggat ctttatgcta aggtgaggca attgatcccg
1051 acttccgagt tagacctttt tgaccccgtg gaggtgaccc atttggtcaa
1101 ttacttacta ttcatcagtc acctttcttc cgtatcttcg tatgacgaca
1151 tcttgtcgtc taatatattc caacatttta ccattccagt caagaacaag
1201 atacgggaat tggtccagct attcaccgga atggaccaat ttaatcaact
1251 gctcaaagct ctcgactggc aaactttttc gtacgctatg ccagtagaga
1301 ccatccatac acgcgcggcc aattatcaag tcgctaaaac gcttcgcatg
1351 tgcagagacc taccatgcga tgaatatgat cgtgtaaagg atgtcctcag
1401 acagctccct gacggagtga cgttgtttga ggaaaacgac aagcatgatc
1451 cctcaaaccc tgaaaccgag gattctgagg atgacactga ctccgtcgac
1501 ttcaaccttc cccctactca tgacttgccc ccaaactttg accctctaga
1551 caagggcaag tccattatcg ttgatactga caacccctca acttctacgg
1601 cacctgccgt cacttttgcc gccggtatca actcctcagc ccccacaaat
1651 atttcatttg gaagcttcac acatgaggct gaggccaccc cccctcctcc
1701 catggaaaag ttgccatggg atctttggat tcccctactg gaacaacatg
1751 gttttaaagg aaagagtaag ctgtacaagc ccacgggtga actaatctgc
1801 cccataactg aaatcaaaac agttccccac tgcccctttc ccgataaagt
1851 cccggatgac tgtgtgcttg cgcttaaatc tattaagcgt ttcgccacaa
1901 aaatgactat gctcagttct cgagcttccg cctacacttc tgacattaag
1951 aatagtagga ctgggaagct cctacccgcc atgaacatgc cctggaaagc
2001 ctctctcgcc tatgtcactc aacatggtga cagagaaatt cctggcgtcg
2051 tgatccatgg tgccggtggc tgtggcaaat cttatgccat ccaaaaatgg
2101 ttgagaagct gctctgaccc ttgcgcagct actgtggtat gcccaactct
2151 agaactacgt aatgactggc tcaataagat cggaagctac gaacaaacga
2201 atatcaaaac ttttgagaaa gctttaattc agccagtcaa caacgtagtt
2251 atctttgatg actacaccaa gctaccccct gggtacatcg agaccatggt
2301 gtaccatcac cacaacctcg acctgatcat attaactggg gatcctatgc
2351 agagtgccta ccatgaaact aacagggatg cctatatctc tttaatacct
2401 gatgcctctg ccatttttag tgagtactgt gagttcaaca ttaacgctac
2451 ccaccgtaat gtggctgaac tcgcttgcct cctcggtgtc tattccgaac
2501 gccaaggcaa actcacagtc tccttcagca cagccccact ttctaaaggt
2551 aaagtaccca ttctggtacc ctctagaatg aagcaagagg cttttgctga
2601 tgtcggcaac cgttgcatga cttacgccgg ttgccagggt ctcactgccc
2651 ctaaaatcca aattttgata gacaaccaca ctacgttctg ctctgaacaa
2701 acattataca cttgtctatc acgagctgtg gaccaaatcc acttcattaa
2751 cactggtccc aactcgcagg ctttctggac caaattggaa tcaacgccgt
2801 acctaaaagc tttcctcgat aattaccgtg aggaacaaac tgaacggcta
2851 acatctaccg ccccagagcc tgaagtccgt gagccagcag ccccaaaaac
2901 gcatatccct gtcgaaaata catctggctt acgtacctct gcacttgaac
2951 tgccggaaaa gcactctcgc gagattttca acaaggcgca tggcttttca
3001 aatgctattc agggagatgg cgtagctccc atgttccagc atcaacaggc
3051 aaaggatgaa acccttttca aggctaccat agacgctaga ctctctataa
3101 cagatcctga taaaaataaa agagagtttg ccatgaagaa agacactggg
3151 gacgtccttt ttgtcaatta caaagctata atgaatctac ctcatgagcc
3201 tgttcctttt gaacctcgtc tctggaacat ctgcaaagct gaagtgcaga
3251 acacatacct agccaaaccc attgcaaatc ttatcaatgg taccttaagg
3301 caatcacctg attttccagc caataaaata gccttattcc tgaaatcgca
3351 atgggtaaag aaaattgaaa aaattggagc cataccagtt aaacctggac
3401 agactattgc atcatttatg caagagactg ttatgctgta tggcaccatg
3451 gcacgctacc tccgtaagat gcgacaaaga tatcaacccg cacatatatt
3501 catcaattgt gaaaagactc cggaggactt caataaattc atacttgaac
3551 actggtcaca caagcaaatt gcccacacca acgattttac tgcttttgac
3601 cagtcacaag atgctgccat gctccaattt gaaattatca aagctaggta
3651 cttcaatatc cccgaggatg ttatagaagg atacatccaa attaagctca
3701 ctgctgaaat cttcctcggg acactttcca tcatgcgcct atctggtgaa
3751 gggccaacct tcgacgccaa tactgaatgc tctattgcct acaacgccac
3801 cagataccat attaatgaag acgtcaccca agtatacgcc ggtgacgaca
3851 tggccatgga ccatgtatgc cctgagaaga agagcttcaa agctttggaa
3901 aagaaactga aattaacctc aaaacctttg tatccaaagc aaaaacctgg
3951 agactgggct gatttctgcg gctggactat aacgccttat ggcatcatta
4001 agaatcctaa gaaacttgac gcatgcctac aattgcacac ccaactgggc
4051 gatgccgata aaggcgctag gtcatacgca ctcgatgcca aatatgctta
4101 tgatctgggc gatcgcattc atgaggttct gaatgctgat gaaatgacca
4151 gccacttcaa tgttataaga cagttgcacc aactgcatca acaagatgtg
4201 ctggtcccac ccgagactac cgtagccaca gcggtaaagt ctcaacctga
4251 cgtggaggat ctgtggctcc gtgcgcttag cttccctgac tggacggacc
4301 gcgcccaact tttaaaacgg ggttaatttc gatggagcta gcgtacttaa
4351 ttagattact agagcacaat aaattcgagc gcaccaatct gcccctttcc
4401 tcacccttag ttgtacacgg aatcgctggc agtggaaaat ccaccatcct
4451 cacaactttc catcaccatt acccggctca ccctatcttc tcacacagtc
4501 ccacattgct tgaccctagc aaccgcatat accaacagtg catcactact
4551 gattcggtgc cagacggtgc tatcgtagac gagtacaatt accaagcact
4601 cgactactct cgctgtctag ccctcttcgg tgatccactc cagcttccac
4651 attcacttca accccactac tactctagtc gcacccaccg ctacggtccc
4701 aagctcacta gcctactcaa cgacctcttc cacctttcta tcacttccct
4751 tgcccccgtc gacagccttg attacgctga tccttttgct gtcgacccct
4801 ccggatttac cattgctgac gaggaagtgt acaactttgt ctctcagcag
4851 gttcccggca ctttgttgcc gctcgatact gtaggtttag aatattctag
4901 tgttagcttt tactgcagtg atctccgacg ctgtgttgta ctaaggccac
4951 tcagcacctt catcgctctc acccgcgcca agggcaacct caccattttc
5001 gatttcaatg ccaggtttag ttccaccacc tgaccactcc aagtcactct
5051 tcgtcctcgc tattggcata actgtggtct ccgcattatt tgtgctaaag
5101 tcccacactt ttccaattgc aggcgacaat attcaccgct tcccctccgg
5151 cggccaatat aaagacggta ctaagcagat aaactactgt ccacctactc
5201 atgctaagta cccgaaatat cctgactaca agtggcttgc cgccaccgcc
5251 gccatcgtca tccctctctg cctatatatt tcctaccatc ctggcaataa
5301 tattcgccgt atttgccctt gttgcaatac atatcaccac ccctgagccc
5351 ttctgtacca tacacataga cggggcgtct attactatca ctaactgccc
5401 cgatcctgca gctatattag ataaagtagc cataggtccc tggcgagggt
5451 taagttacca caataacttg aaataatcat gggagagccc actccgactc
5501 cagctgccac ttactccgct gccgacccca cttctgcacc caagttggcc
5551 gacctggctg ccattaagta ctcacctgtt acctcctcca tcgccacccc
5601 cgaagaaatc aaggccataa cccaattgtg ggttaacaac cttggcctcc
5651 ccgctgacac cgtaggtacc gcggccattg acctggcccg cgcctacgct
5701 gacgtcgggg cgtccaagag tgctaccctg ctcggtttct gccctacgaa
5751 acctgatgtc cgtcgcgccg ctcttgccgc gcagatcttc gtggccaacg
5801 tcaccccccg ccagttttgc gcttactacg caaaagtggt gtggaatctg
5851 atgctggcca ctaacgatcc gcccgccaac tgggccaagg ctggtttcca
5901 ggaggatacc cggtttgccg cctttgactt cttcgatgcc gtcgattcca
5951 ctgccgcgct ggagcctgct gaatggcagc gccgccctac tgaccgtgaa
6001 cgtgctgcgc actcgatcgg gaagtacggc gcccttgccc gtcagcgtat
6051 ccaaaacggc aacctcatca ccaacattgc cgaggtcacc aagggccatc
6101 ttggctccac caacactctc tatgctctgc ctgcaccccc tactgaataa
6151 cgccaaactt aataaggcgt gtggttttct aaagtttgtt tccactactg
6201 gcataatatg tttagccaga ttaaat