Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (P1 protein), partial cds, isolate: KGD661J.

ACC No: AB233087

Dated: 2007-05-23 | Length: 1086 | CRC: -1667565596

                
ID   AB233087; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233087;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: KGD661J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="KGD661J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8G1"
FT                   /protein_id="BAF36857.1"
FT                   /translation="MAAVTFATAITNTTASKPALTGMVQFGNFPPVPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSFAKATRQQPNVEIDVSLSEAAALEAAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIEVEEVRTKWPLHKTPSMKRKTVRRRCKMND
FT                   QGIDMLMRSLIKIFKAKSANIEFIGRKSIKVDFVKKEQTKFARVQVMHLLGKRAQRDLL
FT                   TGAEENHFIDTLSTYSGSRKIINPGVVCAGWSGIVIRNGILTQKQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIIHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 345 A; 232 C; 293 G; 216 T; 0 other;

ab233087 Length: 1086  23-MAY-2007  Type: N  Check: 1934  ..

       1  atggcagcag ttacattcgc aaccgcaatc actaacacca ccgcaagcaa
      51  accagcactc accggaatgg tacagtttgg gaatttccca ccagtaccat
     101  tgcgatccac caccgtcacc acagtcgcca cttcagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggctgcgaa acctagacca
     301  aacgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggctagtt tgaagagaag ctcatatgga attgctgaga
     401  acgagaaagt tgtgatgaca actcgtggcg tcagcaagat agtgcccaga
     451  agttcaaggg cgatgaagca aaagcgcgca agggaaagac gtagagcgca
     501  acaaccaatc atattaaagt gggagcctaa attaagcggg atctcaattg
     551  gaggagggct ctctgcgagc gcgattgaag tggaagaagt ccgcacaaag
     601  tggccgcttc acaagacacc gtcaatgaag aggaagacgg tgcgcagaag
     651  atgcaagatg aatgatcaag gaattgacat gttaatgcgt tctttgatta
     701  aaatctttaa ggcgaagagt gcgaatattg agttcattgg aaggaagtcc
     751  attaaagtgg atttcgtaaa gaaagagcaa acgaagtttg ccagagtgca
     801  agtaatgcat ttgctcggaa agcgagcaca acgcgacctg ttgactggtg
     851  cagaagagaa ccacttcatt gacaccctaa gcacctactc aggtagtagg
     901  aaaatcataa acccaggagt ggtgtgcgct ggttggagtg gcattgtcat
     951  cagaaacggc attttgactc agaagcagag cagaagtcct tcgcaagcct
    1001  ttgtgattcg aggagaacat gaagggaagt tgtatgacgc cagagttaag
    1051  gtcacaaaag tgatgagcca caaaatcata cactat