Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (P1 protein), partial cds, isolate: SD22J.

ACC No: AB233124

Dated: 2007-05-23 | Length: 1086 | CRC: -989068309

                
ID   AB233124; SV 1; linear; genomic RNA; STD; VRL; 1086 BP.
XX
AC   AB233124;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (P1 protein), partial cds,
DE   isolate: SD22J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="SD22J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8J8"
FT                   /protein_id="BAF36894.1"
FT                   /translation="MAAVTFASAITNATINKPASTGMIQFGNFPPVPLRTTTATIVTTP
FT                   VVQPKLYTVQFGSLDPVVVEGKAGSSAKVTRQQPSVEVDASLREAAALEVAKPKPNAVL
FT                   RMHEEANKERALFLDWETSLKRQSYGIAEHEKVVMTTRGVSKIVPRSTRAMKQKRARER
FT                   RRAQHPIVLKWEPQMSQFSIGGGPAANVIEAEEVRTQWPPHKTPSMKKKMVFKACRMNN
FT                   QGIDMLMRSLIKIFKAKNATIEYTVKKSINIDFVRKERTKFARIQVAHMLGRRAQRDLL
FT                   TGVEENHFIDTLSSYSGNKRTISPGVVCAGWSGIVIRNGVLIQNQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKVMSHKIVHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 347 A; 252 C; 281 G; 206 T; 0 other;

ab233124 Length: 1086  23-MAY-2007  Type: N  Check: 5166  ..

       1  atggcagcag ttacattcgc atcagcaatc accaacgcca ccatcaacaa
      51  gccagcatcc accggaatga tacagtttgg gaatttcccg ccagtaccac
     101  tacgaaccac caccgctacc atagtcacca ccccagtggt gcagcctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagttg tcgagggtaa
     201  agcagggtct tctgctaagg taacccgcca gcagcctagc gttgaagtag
     251  acgctagcct cagggaagcc gcagctttag aggttgcgaa gcccaaacca
     301  aatgccgtgt taaggatgca cgaggaagcg aacaaagagc gagcgctctt
     351  cttggactgg gaaaccagcc tgaaaaggca atcgtatggc atcgctgagc
     401  acgagaaagt cgtaatgaca actcgtggcg tcagcaagat agtgcccagg
     451  agtacacggg cgatgaaaca aaagcgcgca agagagaggc gcagggcaca
     501  acatccaatt gtgctgaaat gggagccaca gatgagccag ttctctatcg
     551  gaggaggacc tgccgcaaat gtgattgagg cagaggaggt tcgcacacag
     601  tggccaccac acaaaacacc atcaatgaag aagaagatgg tgtttaaagc
     651  gtgcagaatg aacaaccaag gaatcgacat gctgatgcgt tccttgatta
     701  agatcttcaa ggcaaagaat gccaccattg agtacactgt gaaaaagtct
     751  atcaatatag actttgttag aaaggagcga acaaagttcg ctagaatcca
     801  ggtagcacat atgcttggta gaagagcaca acgtgaccta ttaaccggag
     851  tggaagaaaa ccacttcatt gacactctca gtagttactc aggtaataag
     901  agaaccataa gcccaggagt agtttgtgct ggctggagtg gaatagtcat
     951  cagaaatgga gttctcattc agaaccagag caggagcccg tcacaagcct
    1001  ttgtgatcag aggagaacat gaaggcaaat tgtatgacgc cagggttaaa
    1051  gtcacgaagg tcatgagtca taaaatcgtg cactac