Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro protein), partial cds, isolate: KD980J.

ACC No: AB233131

Dated: 2007-05-23 | Length: 1527 | CRC: -743417260

                
ID   AB233131; SV 1; linear; genomic RNA; STD; VRL; 1527 BP.
XX
AC   AB233131;
XX
DT   17-NOV-2006 (Rel. 89, Created)
DT   23-MAY-2007 (Rel. 91, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein (CI, 6K2, NIa-VPg, NIa-Pro
DE   protein), partial cds, isolate: KD980J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (30-AUG-2005) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomitaka Y., Ohshima K.;
RT   "A phylogeographical study of the Turnip mosaic virus population in East
RT   Asia reveals an 'emergent' lineage in Japan";
RL   Mol. Ecol. 15:4437-4457(2006).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="KD980J"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A0P8K5"
FT                   /db_xref="UniProtKB/TrEMBL:A0P8K5"
FT                   /protein_id="BAF36901.1"
FT                   /translation="TDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVFGGGIWMIIQHLRSKLSEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDV
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDISLVQKHFGDIRMDLLGEDELEPDELRMNKTIQAYYMNNKTGKALKVDLTPHVPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPINIDEVPKANNELIPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELRIQSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VEHSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDGFAEKYLY
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 494 A; 333 C; 352 G; 348 T; 0 other;

ab233131 Length: 1527  23-MAY-2007  Type: N  Check: 4377  ..

       1  actgacggaa tatcccgtca tttcatgagt gagtatggag cactcgaggc
      51  agttcaccac cagaacacca atgacatgag caaattccta aagctcaagg
     101  gcaaatggaa taaaacgtta atcacacgag acgtgttggt gatctgtgga
     151  gtttttggag gcggaatctg gatgataatc caacacctgc gttcaaaact
     201  ttctgaacct gtgacccatg aagcaaaagg caagaggcaa aggcagaaac
     251  taaagtttcg caacgcccga gacaacaaga tgggtagaga ggtatacgga
     301  gatgatgacg tcatagaaca cttcttcgga gatgcctata cgaagaaggg
     351  aaagagcaaa ggcagaacac gtggcctcgg ccataaaaac aggaaattca
     401  tcaatatgta tggatttgat cctgaagact tctcagcagt taggttcgtg
     451  gatccactta ccggagccac actggacgat aatccgttta cggacatctc
     501  cctcgtgcaa aaacactttg gagacattcg aatggacctg cttggagaag
     551  atgaattgga accagatgag ttgcggatga ataagacaat tcaggcctac
     601  tatatgaaca ataaaacagg taaggctctg aaggtggatc ttacaccaca
     651  cgtaccactc aaggtgtgtg acctccatgc aaccatcgct ggtttcccgg
     701  aacgagaaca tgaacttaga caaactggaa aagctcagcc aatcaatata
     751  gacgaagtac ccaaggctaa taatgagcta attccagttg accatgagag
     801  tagctccatg ttcagagggt tgcgcgacta caacccgatt tctaacaaca
     851  tttgtcattt aacaaatgtt tcagacggag catcaaactc gttgtatggt
     901  gttggttttg ggccacttat actaacgaac cgacatcttt tcgaacggaa
     951  taatggcgag cttagaattc aatctagaca tggtgagttt gtgatcaaaa
    1001  acacaactca attacatctg ctaccaattc cggatcggga tttattgcta
    1051  atccgattac caaaagatat cccacccttt ccacagaaat tgggtttcag
    1101  acagcctgag aagggtgaga ggatctgtat ggtaggatcc aacttccaaa
    1151  ccaagagcat aacgagcgtg gtctccgaga ccagtacgat tatgccagtg
    1201  gagcatagtc aattttggaa acactggatt agcaccaaag atggccagtg
    1251  tgggagccca atggtgagca caaaggatgg aaagatactt ggactacaca
    1301  gtctagcaaa tttccaaaac tccattaact actttgctgc cttcccagat
    1351  ggttttgctg agaaatatct atacaccatc gaagcacacg agtgggttaa
    1401  acactggaag tacaacacca gtgcaattag ttggggctct ttaaacatac
    1451  aagccgcgca accagcgggt ttgttcaagg tgagcaaact catatcagac
    1501  ctcgacagca cagcagtgta tgcacaa